Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3129 cluster # 3129       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3129#0 length = 1345 sequences # 2  

consensusID : consensus_3129#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1345
fasta sequence
                              [AACATATCCTTAGGGTTCTCCATCTCCGGGGGTCCGGGGTCAAAGTGAAGAAACCTTCTATTCGTTTCAAGGGACCCCATCTCAAGAGCCTAGGGCTTTGAAATTCAACCAAGAATCTACTTTCCCCCATGCTCCTCGCCAGCCATCTCCATCCGTCGCGCCAGTAGTAGTGAAGTTCCCACTCCACGTCGGCCGGCCGCCATGAGGTTTTCCGAAGCTTTGACCACAAGGAACTTATCTATCTCCTTCTCAAACTTGATCGCCTTTTTTGGGAGAATAAAAGGACACTCTTTTTCCATTTTTTCTCTCTGGGCCGGCTTCAATAGCCTTTTCTTGGCACAGATAAACACTTTATGCCCCACTTCCCTGCAAAATCTATTTCCTGCTGCTCCCTTCTGCATTCCGTGGCTTTATGCCCTTTCTACCTACATCGATAATAGTGGATTCAGCAGGAACTTAAACAACTCATCATTCATTTCTCGATCAATTTTAAACCTTAGAGTCAAAAAGTCCTTCCATGAATCTAGGGAACACCTCTGACTTCACCAACTCTCCCTTTCTTTGGTCGAAGGCTTCAGGTCAAGATCCTTTTTCCTATCTATTGAAGATGCAAAGAGAGATGCTTCTTCCTCTTCAAGTTGGAAGTGCAAGAAGAAATGCGGTAAATAGGAG-TTCCATCTACCAC-GCACTCCAGCTAAC-TTCAGCATCCATACTCAGCTAGGAGGAAGG-TGCCGGGGACACTATGAACACACATGTACTTGGTTGACTTCACGTCCCGTCTCACAACCGGGTAAGATCAAATAAACAAACAGCTTGCTTGCCCAATCCCTATTGAGAGGATTTCTTGAGCTTGAACTTCCTTTTGTAGCTCCGCTCACAAGGACTTCTTTTCATCCGCAATGAAGCTTATACCACCACTTGGTCAGTAAGGCCTGATTCAAAAAAGATCAATCACCCCCTTCCCTACTTCAATGGAAAAGGGGGAATCGCCCTTTCACAGCCGCCCCTCCACAAAATTGATACCTATCCTTTCGCCTAAGATGATCACGAACGAAGACGGAGAATTGCGTAGATAGGAGGAGGAAACGAACCAACCCGGGGCCCCACCAAACAAACAAAAGGGAATGAGAGAAATGATCGGAACGATTGAGGAAAGAAAGAGAATGGCGGCCCCTTTCCTTTCGCCCAGGGGGCATCGTCGTCGGGGACAGGCTTCGAGGGTTCTTCCATATTTAGATATAGAGATAGATGATGATAGAGATCTAGATCTTTCTATAGATAGATCCTTTGATAAATTTCTATTGATCCGCTTTCAAGATCTATGAACAAGAAGAGAGATCAAAAA]

[+] EMBL AK064508             [AACATATCCTTAGGGTTCTCCATCTCCGGGGGTCCGGGGTCAAAGTGAAGAAACCTTCTATTCGTTTCAAGGGACCCCATCTCAAGAGCCTAGGGCTTTGAAATTCAACCAAGAATCTACTTTCCCCCATGCTCCTCGCCAGCCATCTCCATCCGTCGCGCCAGTAGTAGTGAAGTTCCCACTCCACGTCGGCCGGCCGCCATGAGGTTTTCCGAAGCTTTGACCACAAGGAACTTATCTATCTCCTTCTCAAACTTGATCGCCTTTTTTGGGAGAATAAAAGGACACTCTTTTTCCATTTTTTCTCTCTGGGCCGGCTTCAATAGCCTTTTCTTGGCACAGATAAACACTTTATGCCCCACTTCCCTGCAAAATCTATTTCCTGCTGCTCCCTTCTGCATTCCGTGGCTTTATGCCCTTTCTACCTACATCGATAATAGTGGATTCAGCAGGAACTTAAACAACTCATCATTCATTTCTCGATCAATTTTAAACCTTAGAGTCAAAAAGTCCTTCCATGAATCTAGGGAACACCTCTGACTTCACCAACTCTCCCTTTCTTTGGTCGAAGGCTTCAGGTCAAGATCCTTTTTCCTATCTATTGAAGATGCAAAGAGAGATGCTTCTTCCTCTTCAAGTTGGAAGTGCAAGAAGAAATGCGGTAAATAGGAG TTCCATCTACCAC GCACTCCAGCTAAC TTCAGCATCCATACTCAGCTAGGAGGAAGG TGCCGGGGACACTATGAACACACATGTACTTGGTTGACTTCACGTCCCGTCTCACAACCGGGTAAGATCAAATAAACAAACAGCTTGCTTGCCCAATCCCTATTGAGAGGATTTCTTGAGCTTGAACTTCCTTTTGTAGCTCCGCTCACAAGGACTTCTTTTCATCCGCAATGAAGCTTATACCACCACTTGGTCAGTAAGGCCTGATTCAAAAAAGATCAATCACCCCCTTCCCTACTTCAATGGAAAAGGGGGAATCGCCCTTTCACAGCCGCCCCTCCACAAAATTGATACCTATCCTTTCGCCTAAGATGATCACGAACGAAGACGGAGAATTGCGTAGATAGGAGGAGGAAACGAACCAACCCGGGGCCCCACCAAACAAACAAAAGGGAATGAGAGAAATGATCGGAACGATTGAGGAAAGAAAGAGAATGGCGGCCCCTTTCCTTTCGCCCAGGGGGCATCGTCGTCGGGGACAGGCTTCGAGGGTTCTTCCATATTTAGATATAGAGATAGATGATGATAGAGATCTAGATCTTTCTATAGATAGATCCTTTGATAAATTTCTATTGATCCGCTTTCAAGATCTATGAACAAGAAGAGAGATCAAAAA]
[+] EMBL BI801617             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGAGTTTCCATCTACCACGGCACTCCAGCTAACTTTCAGCATCCATACTCAGCTAGGAGGAAGGTTCCCGGGGACACTATGAACACACATGTACTTGGTTGACTTCACGTCCCGTCTCACAACCGGGTAAGATCAAATAAAC AACAGCTTGCTTGCCCAATCCCTATTGAGAGGATTTCTTGAGCTTGAACTTCCTTTTGTAGCTCCGCTCACAAGGACTTCTTTTCATCC CAATGAAGCTTATACCACCACTTGGTCAGTAAGGCCTGATTC AAAAAGATCAATCACCCCCTTCCCTACTTCAATGGAAAAGGGGGAATCGCCCTTTCACA CCGCCCCTCCACAAAATTGATACCTATCCTTTCGCCTAAGATGATCACGAACGAAGACGGAGAATTGCGTAGATAGGAGGAGGAAACGAACCAACCCGGGGCCCCACC AAC AAC AAAGGGAATGAGAGAAATGATCGGAACGATTGAGGAAAaa                                                                                                                                                                                            ]


>consensus_3129#0 AACATATCCTTAGGGTTCTCCATCTCCGGGGGTCCGGGGTCAAAGTGAAGAAACCTTCTA TTCGTTTCAAGGGACCCCATCTCAAGAGCCTAGGGCTTTGAAATTCAACCAAGAATCTAC TTTCCCCCATGCTCCTCGCCAGCCATCTCCATCCGTCGCGCCAGTAGTAGTGAAGTTCCC ACTCCACGTCGGCCGGCCGCCATGAGGTTTTCCGAAGCTTTGACCACAAGGAACTTATCT ATCTCCTTCTCAAACTTGATCGCCTTTTTTGGGAGAATAAAAGGACACTCTTTTTCCATT TTTTCTCTCTGGGCCGGCTTCAATAGCCTTTTCTTGGCACAGATAAACACTTTATGCCCC ACTTCCCTGCAAAATCTATTTCCTGCTGCTCCCTTCTGCATTCCGTGGCTTTATGCCCTT TCTACCTACATCGATAATAGTGGATTCAGCAGGAACTTAAACAACTCATCATTCATTTCT CGATCAATTTTAAACCTTAGAGTCAAAAAGTCCTTCCATGAATCTAGGGAACACCTCTGA CTTCACCAACTCTCCCTTTCTTTGGTCGAAGGCTTCAGGTCAAGATCCTTTTTCCTATCT ATTGAAGATGCAAAGAGAGATGCTTCTTCCTCTTCAAGTTGGAAGTGCAAGAAGAAATGC GGTAAATAGGAGTTCCATCTACCACGCACTCCAGCTAACTTCAGCATCCATACTCAGCTA GGAGGAAGGTGCCGGGGACACTATGAACACACATGTACTTGGTTGACTTCACGTCCCGTC TCACAACCGGGTAAGATCAAATAAACAAACAGCTTGCTTGCCCAATCCCTATTGAGAGGA TTTCTTGAGCTTGAACTTCCTTTTGTAGCTCCGCTCACAAGGACTTCTTTTCATCCGCAA TGAAGCTTATACCACCACTTGGTCAGTAAGGCCTGATTCAAAAAAGATCAATCACCCCCT TCCCTACTTCAATGGAAAAGGGGGAATCGCCCTTTCACAGCCGCCCCTCCACAAAATTGA TACCTATCCTTTCGCCTAAGATGATCACGAACGAAGACGGAGAATTGCGTAGATAGGAGG AGGAAACGAACCAACCCGGGGCCCCACCAAACAAACAAAAGGGAATGAGAGAAATGATCG GAACGATTGAGGAAAGAAAGAGAATGGCGGCCCCTTTCCTTTCGCCCAGGGGGCATCGTC GTCGGGGACAGGCTTCGAGGGTTCTTCCATATTTAGATATAGAGATAGATGATGATAGAG ATCTAGATCTTTCTATAGATAGATCCTTTGATAAATTTCTATTGATCCGCTTTCAAGATC TATGAACAAGAAGAGAGATCAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)