These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_314#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence [AGTAGAAATAATTTTTTAGAATGGGTGGAGGTAGAAGTCGAAATCAAGGTTTAGTTGGAGATCCTTATTTGAATCAATATGGAAATAATTATGGTTATCCAGCCACTGGAGGACTTGGAGCTTATGGTGCTCCAGTTTATACCATTACAACAGCACCAGCTCTTATTGAAGAACCGTGGGCAGTGACACAATGGACTGAATACTATGTTCCAACAGTCCGTGCAGGTGCTAAACGTCCAGTTATTTATGTAGCTGCTCCATTGCCAGCTGCCAGTCCATGTGGTGGTTTTGGTGGTTTAGGAGGTTTAGGAGGTTTAGGAGGTGNNNTNCNTCTTGTCTTGCGCTCGGTGGCGGGCGTGCTGCCGCCTCGTGGTGGGCGGTCCCCGTGGGGGCATGTCGGCCCTCTCCACCGTCGTCCGCTCGTTCGTTGTGGGGCTGTCGTACGGGTCCGTACGGCCCCCGTCCCCCGGCGGAGGGGCACGGCGCGTAGATCGGTAGACGCAGCGGCGGCCGTCGGGATCGTGGCGGTAAGGAGGCGGGGCCCTCTAGCGCGCGGGGCGTAGGCTTACGACCCCGCAAGTGCGCGCCATGGCCAGGTAGGAGTC] [+] EMBL CA756381 [AGTAGAAATAATTTTTTAGAATGGGTGGAGGTAGAAGTCGAAATCAAGGTTTAGTTGGAGATCCTTATTTGAATCAATATGGAAATAATTATGGTTATCCAGCCACTGGAGGACTTGGAGCTTATGGTGCTCCAGTTTATACCATTACAACAGCACCAGCTCTTATTGAAGAACCGTGGGCAGTGACACAATGGACTGAATACTATGTTCCAACAGTCCGTGCAGGTGCTAAACGTCCAGTTATTTATGTAGCTGCTCCATTGCCAGCTGCCAGTCCATGTGGTGGTTTTGGTGGTTTAGGAGGTTTAGGAGGTTTAGGAGGTGNNNTNCNTCTTGTCTTGCGCTCGGTGGCGGGCGTGCTGCCGCCTCGTGGTGGGCGGTCCCCGTGGGGGCATGTCGGCCCTCTCCACCGTCGTCCGCTCGTTCGTTGTGGGGCTGTCGTACGGGTCCGTACGGCCCCCGTCCCCCGGCGGAGGGGCACGGCGCGTAGATCGGTAGACGCAGCGGCGGCCGTCGGGATCGTGGCGGTAAGGAGGCGGGGCCCTCTAGCGCGCGGGGCGTAGGCTTACGACCCCGCAAGTGCGCGCCATGGCCAGGTAGGAGTC] consensusID : consensus_314#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [AAATCAGTTATACACAGATCAACGACCACAACTAGTTTTAAAAAACTACATAAAGAAATAATTTTTTAGAATGGGTGGAGGTAGAAGTCGAAATCAAGGTTTAGTTGGAGATCCTTATTTGAATCAATATGGAGGTGGTTATGGTTATCCAGCCACTGGAGGACTTGGATCTTATGGTGGTCCAGTTTATACCATTACAACAGCACCAGCTCTTATTGAAGAACCGTGGGCAGTAACACAATGGACTGAATACTATGTTCCAACAGTCCGTGCAGGTGCTAAACGTCCAGTTATTTATGTAGCTGCTCCATTACCAGCTGCCAGTCCATGTGGTGGTTTTGGTGGTTTAGGAGGTTTAGGAGGTGGCTTTCCAGCTACAGGTTTCGGTGGTGGCTTTCCAGCCACTGGTTTCGGTGGTGGTTTCCCAGCTACCGGTTTCGGGGGGGGTTTCCCAGCTACTGGTTTCGGAGGTGGTTTCCCAGCTACCGATTTAGGCGGTGGCTTCCCAGCTACCGGCTTCGGTGGTGTGTTAGGAGGGGGTGTCCAGCTCGGGGTTGAGGGGATTAAGGGGGGGGCTATGGGGCCGATCTGGGATATTAAGAC] [+] EMBL CA755627 [AAATCAGTTATACACAGATCAACGACCACAACTAGTTTTAAAAAACTACATAAAGAAATAATTTTTTAGAATGGGTGGAGGTAGAAGTCGAAATCAAGGTTTAGTTGGAGATCCTTATTTGAATCAATATGGAGGTGGTTATGGTTATCCAGCCACTGGAGGACTTGGATCTTATGGTGGTCCAGTTTATACCATTACAACAGCACCAGCTCTTATTGAAGAACCGTGGGCAGTAACACAATGGACTGAATACTATGTTCCAACAGTCCGTGCAGGTGCTAAACGTCCAGTTATTTATGTAGCTGCTCCATTACCAGCTGCCAGTCCATGTGGTGGTTTTGGTGGTTTAGGAGGTTTAGGAGGTGGCTTTCCAGCTACAGGTTTCGGTGGTGGCTTTCCAGCCACTGGTTTCGGTGGTGGTTTCCCAGCTACCGGTTTCGGGGGGGGTTTCCCAGCTACTGGTTTCGGAGGTGGTTTCCCAGCTACCGATTTAGGCGGTGGCTTCCCAGCTACCGGCTTCGGTGGTGTGTTAGGAGGGGGTGTCCAGCTCGGGGTTGAGGGGATTAAGGGGGGGGCTATGGGGCCGATCTGGGATATTAAGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_314#0 --------------------------------------------------AGTAGAAATA 10 consensus_314#1 AAATCAGTTATACACAGATCAACGACCACAACTAGTTTTAAAAAACTACATAAAGAAATA 60 ******* consensus_314#0 ATTTTTTAGAATGGGTGGAGGTAGAAGTCGAAATCAAGGTTTAGTTGGAGATCCTTATTT 70 consensus_314#1 ATTTTTTAGAATGGGTGGAGGTAGAAGTCGAAATCAAGGTTTAGTTGGAGATCCTTATTT 120 ************************************************************ consensus_314#0 GAATCAATATGGAAATAATTATGGTTATCCAGCCACTGGAGGACTTGGAGCTTATGGTGC 130 consensus_314#1 GAATCAATATGGAGGTGGTTATGGTTATCCAGCCACTGGAGGACTTGGATCTTATGGTGG 180 ************* * ******************************* ********* consensus_314#0 TCCAGTTTATACCATTACAACAGCACCAGCTCTTATTGAAGAACCGTGGGCAGTGACACA 190 consensus_314#1 TCCAGTTTATACCATTACAACAGCACCAGCTCTTATTGAAGAACCGTGGGCAGTAACACA 240 ****************************************************** ***** consensus_314#0 ATGGACTGAATACTATGTTCCAACAGTCCGTGCAGGTGCTAAACGTCCAGTTATTTATGT 250 consensus_314#1 ATGGACTGAATACTATGTTCCAACAGTCCGTGCAGGTGCTAAACGTCCAGTTATTTATGT 300 ************************************************************ consensus_314#0 AGCTGCTCCATTGCCAGCTGCCAGTCCATGTGGTGGTTTTGGTGGTTTAGGAGGTTTAGG 310 consensus_314#1 AGCTGCTCCATTACCAGCTGCCAGTCCATGTGGTGGTTTTGGTGGTTTAGGAGGTTTAGG 360 ************ *********************************************** consensus_314#0 AGGTTTAGGAGGTGNNNTNCNTCTTGTCTTGCGCTCGGTGGCGGGCGTGCTGCCGCCTCG 370 consensus_314#1 AGGT-----GGCTTTCCAGCTACAGGTTTCGG---TGGTGGCTTTCCAGCCACTGGTTT- 411 **** * * * * ** * * ****** * ** * * * consensus_314#0 TGGTGGGCGGTCCCCGTGGGGGCATGTCGGCCCTCTCCACCGTCGTCCGCTCGTTCGTTG 430 consensus_314#1 CGGTGGTGGTTTCCCAGCTACCGGTTTCGGGGGGGGTTTCC--CAGCTACTGGTTTCGGA 469 ***** * * *** * **** ** * * ** *** consensus_314#0 TGGGGCTGTCGTACGGGTCCGTACGGCCCCCGTCCCCCGGCGGAGGGGCACGGCGCGTAG 490 consensus_314#1 GGTGGTTTCCCAGCTACCGATTTAGGCGGTGGCTTCCCAGCTACCGGCTTCGGTG-GTGT 528 * ** * * * * *** * *** ** ** *** * ** consensus_314#0 ATCGGTAGACGCAGCGGCGGCCGTCGGGATCGTGGCGGTAAGGAGGCGGGGCCCTCTAGC 550 consensus_314#1 GTTAG--GAGGGGGTGTCCAGC-TCGGGGTTGAGGGGATTAAGGGGGGGG---CTATGGG 582 * * ** * * * * * ***** * * ** * * * * ** *** ** * * consensus_314#0 GCGCGGGGCGTAGGCTTACGACCCCGCAAGTGCGCGCCATGGCCAGGTAGGAGTC 605 consensus_314#1 GC-CGATCTGGGATATTAAGAC--------------------------------- 603 ** ** * *** *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||