cluster # 3140

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Oryza sativa
cluster # 3140 cluster # 3140 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3140#0 length = 855 sequences # 1

consensus_3140#1 length = 591 sequences # 1

consensusID : consensus_3140#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 855
fasta sequence

                              [CACCGCATCCCCTCCCGCATCTCGCTTGCATCGCCACCGCTTGACTCCCCTCCTCCCTCCACCGACGGCCGGCGCCGGATCTCCTTCCTCCGCCGCCAGCGCCGGCTCTGCTTCTCATCTCCTCCCTCCGGCGCCGGCAGCTGTGGTTGCCGGCTCGCGCGGCGACCGGCAGCTGTGGATGGCAGGAATCCATCCGAGAGATCAGCGTTTCGTCTTCAACGCGAGGCAGTTGGACGACAACCAAAGCTTGGCCGATTGCAACATTACCCATAATTCCACGATACACTTCGTATTCGGCATTCCCTGCTTTTACGCTACCCCGGCATACGAACAGTTCAACCGCCTTCCCCGGTCAGAGAGCTCGGATTCGAGTTCGACGAGCAAAGGAGACAGGTCGGATTCGAGTTCGACGAGCAAAAGAGACATCGCCCCGGCAAATGTCAAAACAGTGCACTGCCCAGATTGCCAGGTCCAAGCTAACGTGTACTACTGCAACACCAAGGAGGATAACGAAGGCTGTGTGTTCTACAGGTGCCCTTATTTCTCGATACACACAGGCTGGTGGCTGCCAGTTCGTCCAGTGCGCAGACACGGTTGATGAAGGACTGCAGAAACGAGTGGAACATGCTACTCAGGAAACATCGTGTCCCCAAGGGAATAACATGTCGCTAATGGAGGAGAGGCTGCAGAGGATTCTTGACCATATGAGGTGGATGGAACAGTTCTTGATTGTGTGCATCATCGCTCTAGCGTATGTTGTATTTGTCAAGTAGTTTAGGTAGAGTATCAATTAGTGTGTAATGAATGGTCAATAATGACGCACTTCTGAACCTTGAAATCGATCCACAATTAGGT]

[+] EMBL AK108532             [CACCGCATCCCCTCCCGCATCTCGCTTGCATCGCCACCGCTTGACTCCCCTCCTCCCTCCACCGACGGCCGGCGCCGGATCTCCTTCCTCCGCCGCCAGCGCCGGCTCTGCTTCTCATCTCCTCCCTCCGGCGCCGGCAGCTGTGGTTGCCGGCTCGCGCGGCGACCGGCAGCTGTGGATGGCAGGAATCCATCCGAGAGATCAGCGTTTCGTCTTCAACGCGAGGCAGTTGGACGACAACCAAAGCTTGGCCGATTGCAACATTACCCATAATTCCACGATACACTTCGTATTCGGCATTCCCTGCTTTTACGCTACCCCGGCATACGAACAGTTCAACCGCCTTCCCCGGTCAGAGAGCTCGGATTCGAGTTCGACGAGCAAAGGAGACAGGTCGGATTCGAGTTCGACGAGCAAAAGAGACATCGCCCCGGCAAATGTCAAAACAGTGCACTGCCCAGATTGCCAGGTCCAAGCTAACGTGTACTACTGCAACACCAAGGAGGATAACGAAGGCTGTGTGTTCTACAGGTGCCCTTATTTCTCGATACACACAGGCTGGTGGCTGCCAGTTCGTCCAGTGCGCAGACACGGTTGATGAAGGACTGCAGAAACGAGTGGAACATGCTACTCAGGAAACATCGTGTCCCCAAGGGAATAACATGTCGCTAATGGAGGAGAGGCTGCAGAGGATTCTTGACCATATGAGGTGGATGGAACAGTTCTTGATTGTGTGCATCATCGCTCTAGCGTATGTTGTATTTGTCAAGTAGTTTAGGTAGAGTATCAATTAGTGTGTAATGAATGGTCAATAATGACGCACTTCTGAACCTTGAAATCGATCCACAATTAGGT]




>consensus_3140#0
CACCGCATCCCCTCCCGCATCTCGCTTGCATCGCCACCGCTTGACTCCCCTCCTCCCTCC
ACCGACGGCCGGCGCCGGATCTCCTTCCTCCGCCGCCAGCGCCGGCTCTGCTTCTCATCT
CCTCCCTCCGGCGCCGGCAGCTGTGGTTGCCGGCTCGCGCGGCGACCGGCAGCTGTGGAT
GGCAGGAATCCATCCGAGAGATCAGCGTTTCGTCTTCAACGCGAGGCAGTTGGACGACAA
CCAAAGCTTGGCCGATTGCAACATTACCCATAATTCCACGATACACTTCGTATTCGGCAT
TCCCTGCTTTTACGCTACCCCGGCATACGAACAGTTCAACCGCCTTCCCCGGTCAGAGAG
CTCGGATTCGAGTTCGACGAGCAAAGGAGACAGGTCGGATTCGAGTTCGACGAGCAAAAG
AGACATCGCCCCGGCAAATGTCAAAACAGTGCACTGCCCAGATTGCCAGGTCCAAGCTAA
CGTGTACTACTGCAACACCAAGGAGGATAACGAAGGCTGTGTGTTCTACAGGTGCCCTTA
TTTCTCGATACACACAGGCTGGTGGCTGCCAGTTCGTCCAGTGCGCAGACACGGTTGATG
AAGGACTGCAGAAACGAGTGGAACATGCTACTCAGGAAACATCGTGTCCCCAAGGGAATA
ACATGTCGCTAATGGAGGAGAGGCTGCAGAGGATTCTTGACCATATGAGGTGGATGGAAC
AGTTCTTGATTGTGTGCATCATCGCTCTAGCGTATGTTGTATTTGTCAAGTAGTTTAGGT
AGAGTATCAATTAGTGTGTAATGAATGGTCAATAATGACGCACTTCTGAACCTTGAAATC
GATCCACAATTAGGT

consensusID : consensus_3140#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 591
fasta sequence

                              [TCTCTTTTTCTTCTCCCCGGTGCGCACCGCATCCCCTCCCGCATCTCGCTTGCATCGCCACCGCTTCGACTCCCCTCCTCCCTCCACCGACGGCCGGCGCCGGATCTCCTCCCTCCGCCGCCGGCACCGGCTCTGCTTCTCCTCTCCTCCCTCCGGCGCCGGCAGCCGCGGTTGCCGGCTCGCGCGGCGACCGACGCGCGCGGGAGGCGCCGGATCTCCTCCCTCCGCCGCCGCCGCCGGCTCTGCTTCTCTTCTCCTCCCTCCGGTGCCGGCAGCCACGATTGCCGGCTCGCGCGGCGACCGACGTGCGCGGGAAGCGTCCTCGGGAGGCTCCGGCGCCAGCGGAAGACGATGCGCCGATGGGATGTGGTGGCCGCGGCGGCGGATGTGGTGGTCGACGCCAGATCTCCTCTCCCCGCCGCCGCCGCCGCGAGGAGGAGGAGGTAGTGTTAGTCAAGGAGGACGAGCAGAAGCAGAAGCACTGCGGCCGCGTTCTTTGATCTTTTTTCCCAACTCGATTCGATCGATCACATCACTTGCTAATAACAAGATGGGATTAGCTGTTCTTATCTTTGCATGTTCTGTTCTCTA]

[+] EMBL AK107709             [TCTCTTTTTCTTCTCCCCGGTGCGCACCGCATCCCCTCCCGCATCTCGCTTGCATCGCCACCGCTTCGACTCCCCTCCTCCCTCCACCGACGGCCGGCGCCGGATCTCCTCCCTCCGCCGCCGGCACCGGCTCTGCTTCTCCTCTCCTCCCTCCGGCGCCGGCAGCCGCGGTTGCCGGCTCGCGCGGCGACCGACGCGCGCGGGAGGCGCCGGATCTCCTCCCTCCGCCGCCGCCGCCGGCTCTGCTTCTCTTCTCCTCCCTCCGGTGCCGGCAGCCACGATTGCCGGCTCGCGCGGCGACCGACGTGCGCGGGAAGCGTCCTCGGGAGGCTCCGGCGCCAGCGGAAGACGATGCGCCGATGGGATGTGGTGGCCGCGGCGGCGGATGTGGTGGTCGACGCCAGATCTCCTCTCCCCGCCGCCGCCGCCGCGAGGAGGAGGAGGTAGTGTTAGTCAAGGAGGACGAGCAGAAGCAGAAGCACTGCGGCCGCGTTCTTTGATCTTTTTTCCCAACTCGATTCGATCGATCACATCACTTGCTAATAACAAGATGGGATTAGCTGTTCTTATCTTTGCATGTTCTGTTCTCTA]




>consensus_3140#1
TCTCTTTTTCTTCTCCCCGGTGCGCACCGCATCCCCTCCCGCATCTCGCTTGCATCGCCA
CCGCTTCGACTCCCCTCCTCCCTCCACCGACGGCCGGCGCCGGATCTCCTCCCTCCGCCG
CCGGCACCGGCTCTGCTTCTCCTCTCCTCCCTCCGGCGCCGGCAGCCGCGGTTGCCGGCT
CGCGCGGCGACCGACGCGCGCGGGAGGCGCCGGATCTCCTCCCTCCGCCGCCGCCGCCGG
CTCTGCTTCTCTTCTCCTCCCTCCGGTGCCGGCAGCCACGATTGCCGGCTCGCGCGGCGA
CCGACGTGCGCGGGAAGCGTCCTCGGGAGGCTCCGGCGCCAGCGGAAGACGATGCGCCGA
TGGGATGTGGTGGCCGCGGCGGCGGATGTGGTGGTCGACGCCAGATCTCCTCTCCCCGCC
GCCGCCGCCGCGAGGAGGAGGAGGTAGTGTTAGTCAAGGAGGACGAGCAGAAGCAGAAGC
ACTGCGGCCGCGTTCTTTGATCTTTTTTCCCAACTCGATTCGATCGATCACATCACTTGC
TAATAACAAGATGGGATTAGCTGTTCTTATCTTTGCATGTTCTGTTCTCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3140#0      ------------------------CACCGCATCCCCTCCCGCATCTCGCTTGCATCGCCA 36
consensus_3140#1      TCTCTTTTTCTTCTCCCCGGTGCGCACCGCATCCCCTCCCGCATCTCGCTTGCATCGCCA 60
                                              ************************************

consensus_3140#0      CCGCTT-GACTCCCCTCCTCCCTCCACCGACGGCCGGCGCCGGATCTCCTTCCTCCGCCG 95
consensus_3140#1      CCGCTTCGACTCCCCTCCTCCCTCCACCGACGGCCGGCGCCGGATCTCCTCCCTCCGCCG 120
                      ****** ******************************************* *********

consensus_3140#0      CCAGCGCCGGCTCTGCTTCTCATCTCCTCCCTCCGGCGCCGGCAGCTGTGGTTGCCGGCT 155
consensus_3140#1      CCGGCACCGGCTCTGCTTCTCCTCTCCTCCCTCCGGCGCCGGCAGCCGCGGTTGCCGGCT 180
                      ** ** *************** ************************ * ***********

consensus_3140#0      CGCGCGGCGACCGGCAGCTGTGGATGGCAGGAATCCATCCGAGAGATCAGCGTTTCGTCT 215
consensus_3140#1      CGCGCGGCGACCGACGCGCGCGGGAGGCG----------CCGGATCTCCTCCCTCCGCCG 230
                      ************* *    * **  ***           *  **  **  *  * ** * 

consensus_3140#0      TCAACGCGAGGCAGTTGGACGACAACCAAAGCTTGGCCGATTGCAACATTACCCATAATT 275
consensus_3140#1      CCGCCGC----CGGCTCTGCTTCTCTTCTCCTCCCTCCGGTGCCGGCA---GCCACGATT 283
                       *  ***    * * *   *  *             *** *  *  **    ***  ***

consensus_3140#0      CCACGATACACTTCGTATTCGGCATTCCCTGCTTTTACGCTACCCCGGCATACGAACAGT 335
consensus_3140#1      GC-CGGCTCGCGCGGCGACCGACGTGCGCGGG----AAGCGTCCTCGGGAGGCTCCGGCG 338
                       * **   * *   *    ** * * * * *     * **  ** *** *  *       

consensus_3140#0      TCAACCGCCTTCCCCGGTCAGAGAGCTCGGATTCGAGTTCGACGAGCAAAGGAGACAGGT 395
consensus_3140#1      CCAGCGGAAGACGATGCGCCGATGGGATGTGGT-GGCCGCGGCG-GCGGATGTGGT-GGT 395
                       ** * *    *   *  * **  *   *   * *    ** ** **  * * *   ***

consensus_3140#0      CGGATTCGAGTTCGACGAGCAAAAGAGACATCGCCCCGGCAAATGTCAAAACAGTGCACT 455
consensus_3140#1      CG-ACGCCAGATCTCCTCTCCCCGCCGCCGCCGCCGCGA-GGAGGAGGAGGTAGTGT-TA 452
                      ** *  * ** **  *   *      * *  **** **    * *   *   ****    

consensus_3140#0      GCCCAGATTGCCAGGTCCAAGCTAACGTG-TACTACTGCAACACCAAGGAGGATAACGAA 514
consensus_3140#1      GTCAAGGAGGACGAGCAGAAGCAGAAGCACTGCGGCCGCGTTCTTTGATCTTTTTTCCCA 512
                      * * **   * *  *   ****  * *   * *  * **              *  *  *

consensus_3140#0      GGCTGTGTGTTCTACAGGTGCCCTTATTTCTCGATACACACAGGCTGGTGGCTGCCAGTT 574
consensus_3140#1      ACTCG---ATTCGATCGATCACATCACTTGCTAATA---ACAAGATGG-GATTAGCTGTT 565
                          *    *** *  * *  * * * **    ***   *** * *** *  *  * ***

consensus_3140#0      CGTCCAGTGCGCAGACACGGTTGATGAAGGACTGCAGAAACGAGTGGAACATGCTACTCA 634
consensus_3140#1      CTTATC-TTTGCATGTTCTGTTCTCTA--------------------------------- 591
                      * *    *  ***    * ***    *                                 

consensus_3140#0      GGAAACATCGTGTCCCCAAGGGAATAACATGTCGCTAATGGAGGAGAGGCTGCAGAGGAT 694
consensus_3140#1      ------------------------------------------------------------
                                                                                  

consensus_3140#0      TCTTGACCATATGAGGTGGATGGAACAGTTCTTGATTGTGTGCATCATCGCTCTAGCGTA 754
consensus_3140#1      ------------------------------------------------------------
                                                                                  

consensus_3140#0      TGTTGTATTTGTCAAGTAGTTTAGGTAGAGTATCAATTAGTGTGTAATGAATGGTCAATA 814
consensus_3140#1      ------------------------------------------------------------
                                                                                  

consensus_3140#0      ATGACGCACTTCTGAACCTTGAAATCGATCCACAATTAGGT 855
consensus_3140#1      -----------------------------------------