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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3148#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2040 fasta sequence
[TACTACCTCGTCCGCCTCCATCTCCCTCCACCACTCCAGCTTCCACCCACCCTGCCTCTACCTCGAGGCCGCCATGACCGCCGCGTCGGTGGCGCCGTCGCGTGCCGCGCCACCGCCGGCCCAGTGGGCAGCCAAGAGCGGCCGTGGGAGTCCTACGACCGCGGCATTCAGCACCACGCAGGCTCCGACCTCGCCTCCTCCCTCCGCCTGCTCGCCGACATGCAGGCCGCCGGGCTGCGCCCCAGCGGCGCGGCGTACGCGCGCCTCATCCGGGCGCTCGCCCGCGCCGGCCGGACGCTCGAGGCCGAGGCGCTCCTCCTCGAGATGCGCCGCCTCGGGCTCCGCCCGGACGCCGCGCACTACAACGCCCTCCTCGAGGGGCTCCTCTCCACGGCGCACCTCCGCCTCGCCGACCGCCTCCTCCTCCAGATGGCCGACGACGGCGTCGCGCGGAACCGGCGCACGTACATGCTGCTGCTGAACGCGTACGCCCGGGCCGGCCGCCTCGAGGACTCGTGGTGGGTTCTCGGCGAGATGAAGCGCCGGGGTATTCGGCTTGACACCGCCGGGTACAGCACGCTGGTGCGGCTGTACAGGGACAATGGCATGTGGAAGAAGGCCACCGACCTCATCATGGAGATGCAGGAGCTCGGGGTGGAGCTCGATGTCAAGATTTACAACGGGTTGATCGATACATTCGGCAAGTATGGGCAGTTAGCGGATGCACGCAAGGTGTTCGACAAAATGTGCGCAGAAGGGGTCAAGCCTGATATTACTACATGGAATTCTTTGATTCGGTGGCATTGTCGTGTGGGGAATACGAAACGTGCTCTGCGATTCTTCGCTGCAATGCAGGAGGAAGGAATGTATCCGGATCCTAAAATCTTTGTTACAATCATCAGCAGGTTGGGGGAACAGGGGAAGTGGGACGAAATTAAGAAGCTGTTTCATGGCATGAGGAATCGAGGGCTCAAGGAGAGTGGTGCAGTGTATGCAGTTTTGGTTGACATTTATGGACAATACGGCCATTTTCGTGATGCCCATGACTGTGTAGCTGCTCTCAAAGCTGAGAATCTGCAGCTTTCACCTAGCATCTTTTGTGTCTTGGCCAATGCATATGCTCAACAGGGTTTGTGTGAACAAACTGTAAATGTTCTTCAATTGATGGAGGCAGAAGGAATTGAGCCAAATCTTGTTATGCTGAATTTGCTAATAAATGCTTTTGGTACTGCTGGAAGGCATTTGGAGGCACTTGCTGTACTCCAGCATATCAAGGATAGCGGTATGAGCCCAGATGTTGTGACTTACACAACACTTATGAAGGCTTTCATGAGAGCAAAGAAATTTGAAAAGGTGTCAGAAGTATATAAGGAGATGGAGGGTGCTGGTTGTACTCCTGATAGAAAAGCTAGAGAAATGCTGAATGACGCCTCTATTGTACTGGAACAAAGGGGAATGTTACATTTGTAGCCACCCTTTTGAATTCCAGGGATGGATGCTTTGGCGGGTTATCGAAATTGGAATACCTACAATTCTGAAGTGGCTCAAGCTTCAATTTCTATAACTTGAAGAATACCATATCCCTTTTTTGCTTGCCATGCTGAATGTCTGAAACAGATACGATATATAGTAAACACAGGTGAGTTTTGGCTTGCTCAGGAATATATAGACACTTCTGCAGTTCTTTTTCTCCCTCAGTATTGTAAGATGTCACTCAATAAAATTTCTCCAAGCCTCCAATTATCTTTTTAATTTGTTTACTGCAGAGTGTGCCAAAAAAGACAGAAAGCAACATTATTTAGAAAGAGAAGGTTAGGCTCCTTTCAAGAAAAAGAGAGAGAGAAAGTTAGGTCACAACTTTATGGAACATATCAACGTTTGAAATCTTGTATAGTTTATCCTACAACTGTAAGATGACCTCTTGCTTTAAACATTGCAATAGCTCGGCTCCTCTATTCGCTTCAGATTTACCTATTACTAAATTTCATGGGAGAAAACAATGAGGCATCAAGCCCTCAATTTATCTTAAGCATAGAAATA]
[+] EMBL AK063542 [TACTACCTCGTCCGCCTCCATCTCCCTCCACCACTCCAGCTTCCACCCACCCTGCCTCTACCTCGAGGCCGCCATGACCGCCGCGTCGGTGGCGCCGTCGCGTGCCGCGCCACCGCCGGCCCAGTGGGCAGCCAAGAGCGGCCGTGGGAGTCCTACGACCGCGGCATTCAGCACCACGCAGGCTCCGACCTCGCCTCCTCCCTCCGCCTGCTCGCCGACATGCAGGCCGCCGGGCTGCGCCCCAGCGGCGCGGCGTACGCGCGCCTCATCCGGGCGCTCGCCCGCGCCGGCCGGACGCTCGAGGCCGAGGCGCTCCTCCTCGAGATGCGCCGCCTCGGGCTCCGCCCGGACGCCGCGCACTACAACGCCCTCCTCGAGGGGCTCCTCTCCACGGCGCACCTCCGCCTCGCCGACCGCCTCCTCCTCCAGATGGCCGACGACGGCGTCGCGCGGAACCGGCGCACGTACATGCTGCTGCTGAACGCGTACGCCCGGGCCGGCCGCCTCGAGGACTCGTGGTGGGTTCTCGGCGAGATGAAGCGCCGGGGTATTCGGCTTGACACCGCCGGGTACAGCACGCTGGTGCGGCTGTACAGGGACAATGGCATGTGGAAGAAGGCCACCGACCTCATCATGGAGATGCAGGAGCTCGGGGTGGAGCTCGATGTCAAGATTTACAACGGGTTGATCGATACATTCGGCAAGTATGGGCAGTTAGCGGATGCACGCAAGGTGTTCGACAAAATGTGCGCAGAAGGGGTCAAGCCTGATATTACTACATGGAATTCTTTGATTCGGTGGCATTGTCGTGTGGGGAATACGAAACGTGCTCTGCGATTCTTCGCTGCAATGCAGGAGGAAGGAATGTATCCGGATCCTAAAATCTTTGTTACAATCATCAGCAGGTTGGGGGAACAGGGGAAGTGGGACGAAATTAAGAAGCTGTTTCATGGCATGAGGAATCGAGGGCTCAAGGAGAGTGGTGCAGTGTATGCAGTTTTGGTTGACATTTATGGACAATACGGCCATTTTCGTGATGCCCATGACTGTGTAGCTGCTCTCAAAGCTGAGAATCTGCAGCTTTCACCTAGCATCTTTTGTGTCTTGGCCAATGCATATGCTCAACAGGGTTTGTGTGAACAAACTGTAAATGTTCTTCAATTGATGGAGGCAGAAGGAATTGAGCCAAATCTTGTTATGCTGAATTTGCTAATAAATGCTTTTGGTACTGCTGGAAGGCATTTGGAGGCACTTGCTGTACTCCAGCATATCAAGGATAGCGGTATGAGCCCAGATGTTGTGACTTACACAACACTTATGAAGGCTTTCATGAGAGCAAAGAAATTTGAAAAGGTGTCAGAAGTATATAAGGAGATGGAGGGTGCTGGTTGTACTCCTGATAGAAAAGCTAGAGAAATGCTGAATGACGCCTCTATTGTACTGGAACAAAGGGGAATGTTACATTTGTAGCCACCCTTTTGAATTCCAGGGATGGATGCTTTGGCGGGTTATCGAAATTGGAATACCTACAATTCTGAAGTGGCTCAAGCTTCAATTTCTATAACTTGAAGAATACCATATCCCTTTTTTGCTTGCCATGCTGAATGTCTGAAACAGATACGATATATAGTAAACACAGGTGAGTTTTGGCTTGCTCAGGAATATATAGACACTTCTGCAGTTCTTTTTCTCCCTCAGTATTGTAAGATGTCACTCAATAAAATTTCTCCAAGCCTCCAATTATCTTTTTAATTTGTTTACTGCAGAGTGTGCCAAAAAAGACAGAAAGCAACATTATTTAGAAAGAGAAGGTTAGGCTCCTTTCAAGAAAAAGAGAGAGAGAAAGTTAGGTCACAACTTTATGGAACATATCAACGTTTGAAATCTTGTATAGTTTATCCTACAACTGTAAGATGACCTCTTGCTTTAAACATTGCAATAGCTCGGCTCCTCTATTCGCTTCAGATTTACCTATTACTAAATTTCATGGGAGAAAACAATGAGGCATCAAGCCCTCAATTTATCTTAAGCATAGAAATA]
consensusID : consensus_3148#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 639 fasta sequence
[ACCTAGCATCTTTTGTGTCTTGGCCAATGCATATGCTCAACAGGGTTTGTGTGAACAAACTGTAAATGTTCTTCAATTGATGGAGGCAGAAGGAATTGAGCCAAATCTTGTTATGCTGAATTTGCTAATAAATGCTTTTGGTACTGCTGGAAGGCATTTGGAGGCACTTGCTGTACTCCAGCATATCAAGGATAGCGGTATGAGCCCAGATGTTGTGACTTACACAACACTTATGAAGGCTTTCATGAGAGCAAAGAAATTTGAAAAGGTGTCAGAAGTATATAAGGAGATGGAGGGTGCTTGGTTGTACTCCTGATAGAAAAGCTAGAGAAATGCTGAATGACGCCTCCATTGTACTGGAACAAAGGGGAATGTTACATTTGTAGCCACCCTTTTGAATTCCAGGGATGGATGCTTTGGCGGGTTATCGAAATTGGAATACCTACAATTCTGAAGTGGCTCAAGCTTCAATTTCTATAACTTGAAGAATACCATATCCCTTTTTTGCTTGCCATGCTGAATGTCTGAAACAGATACGATATATAGTAAACACAGAGTGTGCCAAAAAAGACAGAAAGCAACATTATTTCGAAAGGAGAAGAGGAAGAATATCGAACTACATTTCANGGTGCACAAAGG]
[+] EMBL CA765633 [ACCTAGCATCTTTTGTGTCTTGGCCAATGCATATGCTCAACAGGGTTTGTGTGAACAAACTGTAAATGTTCTTCAATTGATGGAGGCAGAAGGAATTGAGCCAAATCTTGTTATGCTGAATTTGCTAATAAATGCTTTTGGTACTGCTGGAAGGCATTTGGAGGCACTTGCTGTACTCCAGCATATCAAGGATAGCGGTATGAGCCCAGATGTTGTGACTTACACAACACTTATGAAGGCTTTCATGAGAGCAAAGAAATTTGAAAAGGTGTCAGAAGTATATAAGGAGATGGAGGGTGCTTGGTTGTACTCCTGATAGAAAAGCTAGAGAAATGCTGAATGACGCCTCCATTGTACTGGAACAAAGGGGAATGTTACATTTGTAGCCACCCTTTTGAATTCCAGGGATGGATGCTTTGGCGGGTTATCGAAATTGGAATACCTACAATTCTGAAGTGGCTCAAGCTTCAATTTCTATAACTTGAAGAATACCATATCCCTTTTTTGCTTGCCATGCTGAATGTCTGAAACAGATACGATATATAGTAAACACAGAGTGTGCCAAAAAAGACAGAAAGCAACATTATTTCGAAAGGAGAAGAGGAAGAATATCGAACTACATTTCANGGTGCACAAAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3148#0 TACTACCTCGTCCGCCTCCATCTCCCTCCACCACTCCAGCTTCCACCCACCCTGCCTCTA 60
consensus_3148#1 ------------------------------------------------------------
consensus_3148#0 CCTCGAGGCCGCCATGACCGCCGCGTCGGTGGCGCCGTCGCGTGCCGCGCCACCGCCGGC 120
consensus_3148#1 ------------------------------------------------------------
consensus_3148#0 CCAGTGGGCAGCCAAGAGCGGCCGTGGGAGTCCTACGACCGCGGCATTCAGCACCACGCA 180
consensus_3148#1 ------------------------------------------------------------
consensus_3148#0 GGCTCCGACCTCGCCTCCTCCCTCCGCCTGCTCGCCGACATGCAGGCCGCCGGGCTGCGC 240
consensus_3148#1 ------------------------------------------------------------
consensus_3148#0 CCCAGCGGCGCGGCGTACGCGCGCCTCATCCGGGCGCTCGCCCGCGCCGGCCGGACGCTC 300
consensus_3148#1 ------------------------------------------------------------
consensus_3148#0 GAGGCCGAGGCGCTCCTCCTCGAGATGCGCCGCCTCGGGCTCCGCCCGGACGCCGCGCAC 360
consensus_3148#1 ------------------------------------------------------------
consensus_3148#0 TACAACGCCCTCCTCGAGGGGCTCCTCTCCACGGCGCACCTCCGCCTCGCCGACCGCCTC 420
consensus_3148#1 ------------------------------------------------------------
consensus_3148#0 CTCCTCCAGATGGCCGACGACGGCGTCGCGCGGAACCGGCGCACGTACATGCTGCTGCTG 480
consensus_3148#1 ------------------------------------------------------------
consensus_3148#0 AACGCGTACGCCCGGGCCGGCCGCCTCGAGGACTCGTGGTGGGTTCTCGGCGAGATGAAG 540
consensus_3148#1 ------------------------------------------------------------
consensus_3148#0 CGCCGGGGTATTCGGCTTGACACCGCCGGGTACAGCACGCTGGTGCGGCTGTACAGGGAC 600
consensus_3148#1 ------------------------------------------------------------
consensus_3148#0 AATGGCATGTGGAAGAAGGCCACCGACCTCATCATGGAGATGCAGGAGCTCGGGGTGGAG 660
consensus_3148#1 ------------------------------------------------------------
consensus_3148#0 CTCGATGTCAAGATTTACAACGGGTTGATCGATACATTCGGCAAGTATGGGCAGTTAGCG 720
consensus_3148#1 ------------------------------------------------------------
consensus_3148#0 GATGCACGCAAGGTGTTCGACAAAATGTGCGCAGAAGGGGTCAAGCCTGATATTACTACA 780
consensus_3148#1 ------------------------------------------------------------
consensus_3148#0 TGGAATTCTTTGATTCGGTGGCATTGTCGTGTGGGGAATACGAAACGTGCTCTGCGATTC 840
consensus_3148#1 ------------------------------------------------------------
consensus_3148#0 TTCGCTGCAATGCAGGAGGAAGGAATGTATCCGGATCCTAAAATCTTTGTTACAATCATC 900
consensus_3148#1 ------------------------------------------------------------
consensus_3148#0 AGCAGGTTGGGGGAACAGGGGAAGTGGGACGAAATTAAGAAGCTGTTTCATGGCATGAGG 960
consensus_3148#1 ------------------------------------------------------------
consensus_3148#0 AATCGAGGGCTCAAGGAGAGTGGTGCAGTGTATGCAGTTTTGGTTGACATTTATGGACAA 1020
consensus_3148#1 ------------------------------------------------------------
consensus_3148#0 TACGGCCATTTTCGTGATGCCCATGACTGTGTAGCTGCTCTCAAAGCTGAGAATCTGCAG 1080
consensus_3148#1 ------------------------------------------------------------
consensus_3148#0 CTTTCACCTAGCATCTTTTGTGTCTTGGCCAATGCATATGCTCAACAGGGTTTGTGTGAA 1140
consensus_3148#1 -----ACCTAGCATCTTTTGTGTCTTGGCCAATGCATATGCTCAACAGGGTTTGTGTGAA 55
*******************************************************
consensus_3148#0 CAAACTGTAAATGTTCTTCAATTGATGGAGGCAGAAGGAATTGAGCCAAATCTTGTTATG 1200
consensus_3148#1 CAAACTGTAAATGTTCTTCAATTGATGGAGGCAGAAGGAATTGAGCCAAATCTTGTTATG 115
************************************************************
consensus_3148#0 CTGAATTTGCTAATAAATGCTTTTGGTACTGCTGGAAGGCATTTGGAGGCACTTGCTGTA 1260
consensus_3148#1 CTGAATTTGCTAATAAATGCTTTTGGTACTGCTGGAAGGCATTTGGAGGCACTTGCTGTA 175
************************************************************
consensus_3148#0 CTCCAGCATATCAAGGATAGCGGTATGAGCCCAGATGTTGTGACTTACACAACACTTATG 1320
consensus_3148#1 CTCCAGCATATCAAGGATAGCGGTATGAGCCCAGATGTTGTGACTTACACAACACTTATG 235
************************************************************
consensus_3148#0 AAGGCTTTCATGAGAGCAAAGAAATTTGAAAAGGTGTCAGAAGTATATAAGGAGATGGAG 1380
consensus_3148#1 AAGGCTTTCATGAGAGCAAAGAAATTTGAAAAGGTGTCAGAAGTATATAAGGAGATGGAG 295
************************************************************
consensus_3148#0 GGTGCT-GGTTGTACTCCTGATAGAAAAGCTAGAGAAATGCTGAATGACGCCTCTATTGT 1439
consensus_3148#1 GGTGCTTGGTTGTACTCCTGATAGAAAAGCTAGAGAAATGCTGAATGACGCCTCCATTGT 355
****** *********************************************** *****
consensus_3148#0 ACTGGAACAAAGGGGAATGTTACATTTGTAGCCACCCTTTTGAATTCCAGGGATGGATGC 1499
consensus_3148#1 ACTGGAACAAAGGGGAATGTTACATTTGTAGCCACCCTTTTGAATTCCAGGGATGGATGC 415
************************************************************
consensus_3148#0 TTTGGCGGGTTATCGAAATTGGAATACCTACAATTCTGAAGTGGCTCAAGCTTCAATTTC 1559
consensus_3148#1 TTTGGCGGGTTATCGAAATTGGAATACCTACAATTCTGAAGTGGCTCAAGCTTCAATTTC 475
************************************************************
consensus_3148#0 TATAACTTGAAGAATACCATATCCCTTTTTTGCTTGCCATGCTGAATGTCTGAAACAGAT 1619
consensus_3148#1 TATAACTTGAAGAATACCATATCCCTTTTTTGCTTGCCATGCTGAATGTCTGAAACAGAT 535
************************************************************
consensus_3148#0 ACGATATATAGTAAACACAGGTGAGTTTTGGCTTGCTCAGGAATATATAGACACTTCTGC 1679
consensus_3148#1 ACGATATATAGTAAACACAGA---------GTGTGCCAAAAAAGACAGAAA-------GC 579
******************** * *** * ** * * * * **
consensus_3148#0 AGTTCTTTTTCTCCCTCAGTATTGTAAGATGTCACTCAATAAAATTTCTCCAAGCCTCCA 1739
consensus_3148#1 AACATTATTTCGAAAGGAGAAGAGGAAGAA--TATCGAACTACATTTCANGGTGCACAAA 637
* * **** ** * * **** * ** * ***** ** *
consensus_3148#0 ATTATCTTTTTAATTTGTTTACTGCAGAGTGTGCCAAAAAAGACAGAAAGCAACATTATT 1799
consensus_3148#1 GG---------------------------------------------------------- 639
consensus_3148#0 TAGAAAGAGAAGGTTAGGCTCCTTTCAAGAAAAAGAGAGAGAGAAAGTTAGGTCACAACT 1859
consensus_3148#1 ------------------------------------------------------------
consensus_3148#0 TTATGGAACATATCAACGTTTGAAATCTTGTATAGTTTATCCTACAACTGTAAGATGACC 1919
consensus_3148#1 ------------------------------------------------------------
consensus_3148#0 TCTTGCTTTAAACATTGCAATAGCTCGGCTCCTCTATTCGCTTCAGATTTACCTATTACT 1979
consensus_3148#1 ------------------------------------------------------------
consensus_3148#0 AAATTTCATGGGAGAAAACAATGAGGCATCAAGCCCTCAATTTATCTTAAGCATAGAAAT 2039
consensus_3148#1 ------------------------------------------------------------
consensus_3148#0 A 2040
consensus_3148#1 -
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||