These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3149#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence [ANACANGGGNGANGCCTACAATANTANNACGCTGGCTACCAGATTTCAGAATACCANTTAAGATAGAAGTGCGACATCAACTGCTACCTTGTGCTTATTCTCTGAAAGTATANCATAGATGCTCTGCTTTGTTCTCTNGTTTAGACAACCACATCCACCCATTTGGAACAAATCAAAAGGGTTCCTCATAGCCCGTANGNTACTGCGAANTTACACTGCACATAGCTGTTCCTAAANAGGGCACGGCAGTAGNCGAGAACTNTGNGNCTTGCACATNGCTGTTTCTAANTAGGNCACGGGATTNGNCANGANCTATGCGNCANATCCTTGTTGTCGAGGATCCTGATAGTTGACTCCTNAACGGNAAAATAAAAGACGAGGTCCTAGNTTGGCNAAATAGTGCNGGGGCACTAGAGAAAAAAAAGGCATTTTGCATCATCTNCAACCNAGTNTTAGGGCAAANGAGGGGCTACTTGNTTGNCCCTNCNCAAGTGANGTTNCTGNNCTGAAGANAGCGGCGAGCGATGACCAATGCATCACCATTCACCACTANCTAACCAATCC] [+] EMBL CA765634 [ANACANGGGNGANGCCTACAATANTANNACGCTGGCTACCAGATTTCAGAATACCANTTAAGATAGAAGTGCGACATCAACTGCTACCTTGTGCTTATTCTCTGAAAGTATANCATAGATGCTCTGCTTTGTTCTCTNGTTTAGACAACCACATCCACCCATTTGGAACAAATCAAAAGGGTTCCTCATAGCCCGTANGNTACTGCGAANTTACACTGCACATAGCTGTTCCTAAANAGGGCACGGCAGTAGNCGAGAACTNTGNGNCTTGCACATNGCTGTTTCTAANTAGGNCACGGGATTNGNCANGANCTATGCGNCANATCCTTGTTGTCGAGGATCCTGATAGTTGACTCCTNAACGGNAAAATAAAAGACGAGGTCCTAGNTTGGCNAAATAGTGCNGGGGCACTAGAGAAAAAAAAGGCATTTTGCATCATCTNCAACCNAGTNTTAGGGCAAANGAGGGGCTACTTGNTTGNCCCTNCNCAAGTGANGTTNCTGNNCTGAAGANAGCGGCGAGCGATGACCAATGCATCACCATTCACCACTANCTAACCAATCC] consensusID : consensus_3149#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence [CAATAATAATACGCTGGCTACCAGATTTCAGAATCACCAATTAAGATAGAAGTGCGACATCAACTGATACCTTGTGCTAATTCTCTGAAAGTATAACATAGATGCTCTGCTTTGTTCTCTTGTTTAGACAACCACATCCACCCATTTGGAACAAATCAAAAGGTTTCCTCATAGCCCGTAGGTTACTGCGAATTTACACTGCACATAGCTGTTTCTAAATAGGGCACGGCAATAGCCGTGAACTCTGCGTCTTGCACATAGCTGGTTCTAAAT] [+] EMBL CB096767 [CAATAATAATACGCTGGCTACCAGATTTCAGAATCACCAATTAAGATAGAAGTGCGACATCAACTGATACCTTGTGCTAATTCTCTGAAAGTATAACATAGATGCTCTGCTTTGTTCTCTTGTTTAGACAACCACATCCACCCATTTGGAACAAATCAAAAGGTTTCCTCATAGCCCGTAGGTTACTGCGAATTTACACTGCACATAGCTGTTTCTAAATAGGGCACGGCAATAGCCGTGAACTCTGCGTCTTGCACATAGCTGGTTCTAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3149#0 ANACANGGGNGANGCCTACAATANTANNACGCTGGCTACCAGATTTCAGAAT-ACCANTT 59 consensus_3149#1 ------------------CAATAATAATACGCTGGCTACCAGATTTCAGAATCACCAATT 42 ***** ** ************************ **** ** consensus_3149#0 AAGATAGAAGTGCGACATCAACTGCTACCTTGTGCTTATTCTCTGAAAGTATANCATAGA 119 consensus_3149#1 AAGATAGAAGTGCGACATCAACTGATACCTTGTGCTAATTCTCTGAAAGTATAACATAGA 102 ************************ *********** **************** ****** consensus_3149#0 TGCTCTGCTTTGTTCTCTNGTTTAGACAACCACATCCACCCATTTGGAACAAATCAAAAG 179 consensus_3149#1 TGCTCTGCTTTGTTCTCTTGTTTAGACAACCACATCCACCCATTTGGAACAAATCAAAAG 162 ****************** ***************************************** consensus_3149#0 GGTTCCTCATAGCCCGTANGNTACTGCGAANTTACACTGCACATAGCTGTTCCTAAANAG 239 consensus_3149#1 GTTTCCTCATAGCCCGTAGGTTACTGCGAATTTACACTGCACATAGCTGTTTCTAAATAG 222 * **************** * ********* ******************** ***** ** consensus_3149#0 GGCACGGCAGTAGNCGAGAACTNTGNGNCTTGCACATNGCTGTTTCTAANTAGGNCACGG 299 consensus_3149#1 GGCACGGCAATAGCCGTGAACTCTGCGTCTTGCACATAGCTGGTTCTAAAT--------- 273 ********* *** ** ***** ** * ********* **** ****** * consensus_3149#0 GATTNGNCANGANCTATGCGNCANATCCTTGTTGTCGAGGATCCTGATAGTTGACTCCTN 359 consensus_3149#1 ------------------------------------------------------------ consensus_3149#0 AACGGNAAAATAAAAGACGAGGTCCTAGNTTGGCNAAATAGTGCNGGGGCACTAGAGAAA 419 consensus_3149#1 ------------------------------------------------------------ consensus_3149#0 AAAAAGGCATTTTGCATCATCTNCAACCNAGTNTTAGGGCAAANGAGGGGCTACTTGNTT 479 consensus_3149#1 ------------------------------------------------------------ consensus_3149#0 GNCCCTNCNCAAGTGANGTTNCTGNNCTGAAGANAGCGGCGAGCGATGACCAATGCATCA 539 consensus_3149#1 ------------------------------------------------------------ consensus_3149#0 CCATTCACCACTANCTAACCAATCC 564 consensus_3149#1 ------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||