cluster # 3149

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Oryza sativa
cluster # 3149 cluster # 3149 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3149#0 length = 564 sequences # 1

consensus_3149#1 length = 273 sequences # 1

consensusID : consensus_3149#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 564
fasta sequence

                              [ANACANGGGNGANGCCTACAATANTANNACGCTGGCTACCAGATTTCAGAATACCANTTAAGATAGAAGTGCGACATCAACTGCTACCTTGTGCTTATTCTCTGAAAGTATANCATAGATGCTCTGCTTTGTTCTCTNGTTTAGACAACCACATCCACCCATTTGGAACAAATCAAAAGGGTTCCTCATAGCCCGTANGNTACTGCGAANTTACACTGCACATAGCTGTTCCTAAANAGGGCACGGCAGTAGNCGAGAACTNTGNGNCTTGCACATNGCTGTTTCTAANTAGGNCACGGGATTNGNCANGANCTATGCGNCANATCCTTGTTGTCGAGGATCCTGATAGTTGACTCCTNAACGGNAAAATAAAAGACGAGGTCCTAGNTTGGCNAAATAGTGCNGGGGCACTAGAGAAAAAAAAGGCATTTTGCATCATCTNCAACCNAGTNTTAGGGCAAANGAGGGGCTACTTGNTTGNCCCTNCNCAAGTGANGTTNCTGNNCTGAAGANAGCGGCGAGCGATGACCAATGCATCACCATTCACCACTANCTAACCAATCC]

[+] EMBL CA765634             [ANACANGGGNGANGCCTACAATANTANNACGCTGGCTACCAGATTTCAGAATACCANTTAAGATAGAAGTGCGACATCAACTGCTACCTTGTGCTTATTCTCTGAAAGTATANCATAGATGCTCTGCTTTGTTCTCTNGTTTAGACAACCACATCCACCCATTTGGAACAAATCAAAAGGGTTCCTCATAGCCCGTANGNTACTGCGAANTTACACTGCACATAGCTGTTCCTAAANAGGGCACGGCAGTAGNCGAGAACTNTGNGNCTTGCACATNGCTGTTTCTAANTAGGNCACGGGATTNGNCANGANCTATGCGNCANATCCTTGTTGTCGAGGATCCTGATAGTTGACTCCTNAACGGNAAAATAAAAGACGAGGTCCTAGNTTGGCNAAATAGTGCNGGGGCACTAGAGAAAAAAAAGGCATTTTGCATCATCTNCAACCNAGTNTTAGGGCAAANGAGGGGCTACTTGNTTGNCCCTNCNCAAGTGANGTTNCTGNNCTGAAGANAGCGGCGAGCGATGACCAATGCATCACCATTCACCACTANCTAACCAATCC]




>consensus_3149#0
ANACANGGGNGANGCCTACAATANTANNACGCTGGCTACCAGATTTCAGAATACCANTTA
AGATAGAAGTGCGACATCAACTGCTACCTTGTGCTTATTCTCTGAAAGTATANCATAGAT
GCTCTGCTTTGTTCTCTNGTTTAGACAACCACATCCACCCATTTGGAACAAATCAAAAGG
GTTCCTCATAGCCCGTANGNTACTGCGAANTTACACTGCACATAGCTGTTCCTAAANAGG
GCACGGCAGTAGNCGAGAACTNTGNGNCTTGCACATNGCTGTTTCTAANTAGGNCACGGG
ATTNGNCANGANCTATGCGNCANATCCTTGTTGTCGAGGATCCTGATAGTTGACTCCTNA
ACGGNAAAATAAAAGACGAGGTCCTAGNTTGGCNAAATAGTGCNGGGGCACTAGAGAAAA
AAAAGGCATTTTGCATCATCTNCAACCNAGTNTTAGGGCAAANGAGGGGCTACTTGNTTG
NCCCTNCNCAAGTGANGTTNCTGNNCTGAAGANAGCGGCGAGCGATGACCAATGCATCAC
CATTCACCACTANCTAACCAATCC

consensusID : consensus_3149#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 273
fasta sequence

                              [CAATAATAATACGCTGGCTACCAGATTTCAGAATCACCAATTAAGATAGAAGTGCGACATCAACTGATACCTTGTGCTAATTCTCTGAAAGTATAACATAGATGCTCTGCTTTGTTCTCTTGTTTAGACAACCACATCCACCCATTTGGAACAAATCAAAAGGTTTCCTCATAGCCCGTAGGTTACTGCGAATTTACACTGCACATAGCTGTTTCTAAATAGGGCACGGCAATAGCCGTGAACTCTGCGTCTTGCACATAGCTGGTTCTAAAT]

[+] EMBL CB096767             [CAATAATAATACGCTGGCTACCAGATTTCAGAATCACCAATTAAGATAGAAGTGCGACATCAACTGATACCTTGTGCTAATTCTCTGAAAGTATAACATAGATGCTCTGCTTTGTTCTCTTGTTTAGACAACCACATCCACCCATTTGGAACAAATCAAAAGGTTTCCTCATAGCCCGTAGGTTACTGCGAATTTACACTGCACATAGCTGTTTCTAAATAGGGCACGGCAATAGCCGTGAACTCTGCGTCTTGCACATAGCTGGTTCTAAAT]




>consensus_3149#1
CAATAATAATACGCTGGCTACCAGATTTCAGAATCACCAATTAAGATAGAAGTGCGACAT
CAACTGATACCTTGTGCTAATTCTCTGAAAGTATAACATAGATGCTCTGCTTTGTTCTCT
TGTTTAGACAACCACATCCACCCATTTGGAACAAATCAAAAGGTTTCCTCATAGCCCGTA
GGTTACTGCGAATTTACACTGCACATAGCTGTTTCTAAATAGGGCACGGCAATAGCCGTG
AACTCTGCGTCTTGCACATAGCTGGTTCTAAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3149#0      ANACANGGGNGANGCCTACAATANTANNACGCTGGCTACCAGATTTCAGAAT-ACCANTT 59
consensus_3149#1      ------------------CAATAATAATACGCTGGCTACCAGATTTCAGAATCACCAATT 42
                                        ***** **  ************************ **** **

consensus_3149#0      AAGATAGAAGTGCGACATCAACTGCTACCTTGTGCTTATTCTCTGAAAGTATANCATAGA 119
consensus_3149#1      AAGATAGAAGTGCGACATCAACTGATACCTTGTGCTAATTCTCTGAAAGTATAACATAGA 102
                      ************************ *********** **************** ******

consensus_3149#0      TGCTCTGCTTTGTTCTCTNGTTTAGACAACCACATCCACCCATTTGGAACAAATCAAAAG 179
consensus_3149#1      TGCTCTGCTTTGTTCTCTTGTTTAGACAACCACATCCACCCATTTGGAACAAATCAAAAG 162
                      ****************** *****************************************

consensus_3149#0      GGTTCCTCATAGCCCGTANGNTACTGCGAANTTACACTGCACATAGCTGTTCCTAAANAG 239
consensus_3149#1      GTTTCCTCATAGCCCGTAGGTTACTGCGAATTTACACTGCACATAGCTGTTTCTAAATAG 222
                      * **************** * ********* ******************** ***** **

consensus_3149#0      GGCACGGCAGTAGNCGAGAACTNTGNGNCTTGCACATNGCTGTTTCTAANTAGGNCACGG 299
consensus_3149#1      GGCACGGCAATAGCCGTGAACTCTGCGTCTTGCACATAGCTGGTTCTAAAT--------- 273
                      ********* *** ** ***** ** * ********* **** ****** *         

consensus_3149#0      GATTNGNCANGANCTATGCGNCANATCCTTGTTGTCGAGGATCCTGATAGTTGACTCCTN 359
consensus_3149#1      ------------------------------------------------------------
                                                                                  

consensus_3149#0      AACGGNAAAATAAAAGACGAGGTCCTAGNTTGGCNAAATAGTGCNGGGGCACTAGAGAAA 419
consensus_3149#1      ------------------------------------------------------------
                                                                                  

consensus_3149#0      AAAAAGGCATTTTGCATCATCTNCAACCNAGTNTTAGGGCAAANGAGGGGCTACTTGNTT 479
consensus_3149#1      ------------------------------------------------------------
                                                                                  

consensus_3149#0      GNCCCTNCNCAAGTGANGTTNCTGNNCTGAAGANAGCGGCGAGCGATGACCAATGCATCA 539
consensus_3149#1      ------------------------------------------------------------
                                                                                  

consensus_3149#0      CCATTCACCACTANCTAACCAATCC 564
consensus_3149#1      -------------------------