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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3152#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 734 fasta sequence
[TCGCTTNATCCTCAGAAACCACGACGACTTGGCGCAACAAATCTCTCAAAGAAGTAACAGCATGGCACAAGGTGGCANTAAGAAGCAGCAGTTCCAATGGCATCGGCTACATCACGCAGCGCAGCACAAGAAGCAGCGCTACCAACAACAGGAGCTTCACAACAACAGGCAGCAGAAGAAGCACCTTCGTCGCACAGGAGGGCAGCAGCACAGCAACAGGGAGAGGCTTTGTCCGGGCTTCGCAGCTGGTCCCTAGTGCCAGGGNCGTCTCAGTGAGATCACACCAGTCTGATGACGCGGCATTGGCGTACAGGCTGCAGCAGGAGGAGTTCATGACGGCTTTCGAGAGCGAGGGCGAGAGGCAGCCACCTCGGAGCAGCAGCAGCACGGTGTCCGCTGCTCGAGCGAATCTGAGAGCTATGGCCTCCCGGGCCATTCGNCTCCGAGCTCGNGGCTGGCCTGTCTAGNTTTGGTTGCCTGTTTGNTCTAATCTTTTCTGCTTACTAATTGCTGATTCTTCCTCATAGTCATAGCAGAAGCGNCGTGGNGGTATTCTATTGAGTGGACAGATGTAATTNGCTACGAAATAATGGTTCTTCGCTGTGTCAAGTGNCCATNATTCGTTGGCACTCACAAGGTTCAGTTTGTGTAACAGTCATATGACATGTCAAGNTAACTCAACTTGGTCAGCGTTATTGGTCCTTGCTAATTCGAACATAGTCGGGTTAGCCTGC]
[+] EMBL CB096477 [TCGCTTNATCCTCAGAAACCACGACGACTTGGCGCAACAAATCTCTCAAAGAAGTAACAGCATGGCACAAGGTGGCANTAAGAAGCAGCAGTTCCAATGGCATCGGCTACATCACGCAGCGCAGCACAAGAAGCAGCGCTACCAACAACAGGAGCTTCACAACAACAGGCAGCAGAAGAAGCACCTTCGTCGCACAGGAGGGCAGCAGCACAGCAACAGGGAGAGGCTTTGTCCGGGCTTCGCAGCTGGTCCCTAGTGCCAGGGNCGTCTCAGTGAGATCACACCAGTCTGATGACGCGGCATTGGCGTACAGGCTGCAGCAGGAGGAGTTCATGACGGCTTTCGAGAGCGAGGGCGAGAGGCAGCCACCTCGGAGCAGCAGCAGCACGGTGTCCGCTGCTCGAGCGAATCTGAGAGCTATGGCCTCCCGGGCCATTCGNCTCCGAGCTCGNGGCTGGCCTGTCTAGNTTTGGTTGCCTGTTTGNTCTAATCTTTTCTGCTTACTAATTGCTGATTCTTCCTCATAGTCATAGCAGAAGCGNCGTGGNGGTATTCTATTGAGTGGACAGATGTAATTNGCTACGAAATAATGGTTCTTCGCTGTGTCAAGTGNCCATNATTCGTTGGCACTCACAAGGTTCAGTTTGTGTAACAGTCATATGACATGTCAAGNTAACTCAACTTGGTCAGCGTTATTGGTCCTTGCTAATTCGAACATAGTCGGGTTAGCCTGC]
consensusID : consensus_3152#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 645 fasta sequence
[TTNAATCGCTTGATCCTCAGNAACCACGANGACTTGGCGCANCAAATCTCTCANAGAAGTAACACGCANGGCACAAGGTGGCATNAGAAGCNGNANGTCCAATGGCATNGGCTACATNACGCANNGCACCACAAGAAGCAANGCTACCAACAACAGGAGCTTCACAACAACAGGCNGCANAAGAAGCACGCTTCGACGCACAGGANGGCAGCAGCACAGCAACAGGGAGAGGCTTTGGCCGGNCTNCGCAGCTGNACCCTAGNGCCAGGGTCGTNTNAGNGAGATCACACCAGCNCTGATGACGCGGCATTGGCGNACAGGCTGCAGCAGGAGGAGTTCATGACGGCTTTCNAGAGCGAGGGCNAGAGGCANCCACCTCGGAGCAGCANCAGCACGGTGTCCGCTGCTCNAGCGAATCTGANAGCTATGGCCTCCNGGNNCATTCGTNTCCGANCTCGTGGCTGNCCTGTCTAGTTTTGNCNGNCTGATTGTTCTAATCTNTTCTGCNTACTAATTGCTGATNCTTCCTCANAGTCATAGCAGAAGTGACGTGGGGTNTTCTACTGAGNGGACAGATGTNANTTGCTACGAAATNAATGGNTCTTTCGCTGTGTCAAGTGGCCATCATNACGTTTGGCACTNACA]
[+] EMBL CA765649 [TTNAATCGCTTGATCCTCAGNAACCACGANGACTTGGCGCANCAAATCTCTCANAGAAGTAACACGCANGGCACAAGGTGGCATNAGAAGCNGNANGTCCAATGGCATNGGCTACATNACGCANNGCACCACAAGAAGCAANGCTACCAACAACAGGAGCTTCACAACAACAGGCNGCANAAGAAGCACGCTTCGACGCACAGGANGGCAGCAGCACAGCAACAGGGAGAGGCTTTGGCCGGNCTNCGCAGCTGNACCCTAGNGCCAGGGTCGTNTNAGNGAGATCACACCAGCNCTGATGACGCGGCATTGGCGNACAGGCTGCAGCAGGAGGAGTTCATGACGGCTTTCNAGAGCGAGGGCNAGAGGCANCCACCTCGGAGCAGCANCAGCACGGTGTCCGCTGCTCNAGCGAATCTGANAGCTATGGCCTCCNGGNNCATTCGTNTCCGANCTCGTGGCTGNCCTGTCTAGTTTTGNCNGNCTGATTGTTCTAATCTNTTCTGCNTACTAATTGCTGATNCTTCCTCANAGTCATAGCAGAAGTGACGTGGGGTNTTCTACTGAGNGGACAGATGTNANTTGCTACGAAATNAATGGNTCTTTCGCTGTGTCAAGTGGCCATCATNACGTTTGGCACTNACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3152#0 -----TCGCTTNATCCTCAGAAACCACGACGACTTGGCGCAACAAATCTCTCAAAGAAGT 55
consensus_3152#1 TTNAATCGCTTGATCCTCAGNAACCACGANGACTTGGCGCANCAAATCTCTCANAGAAGT 60
****** ******** ******** *********** *********** ******
consensus_3152#0 AACA-GCATGGCACAAGGTGGCANTAAGAAGCAGCAGTTCCAATGGCATCGGCTACATCA 114
consensus_3152#1 AACACGCANGGCACAAGGTGGCATNA-GAAGCNGNANGTCCAATGGCATNGGCTACATNA 119
**** *** ************** * ***** * * *********** ******** *
consensus_3152#0 CGCAGCGCAGCACAAGAAGCAGCGCTACCAACAACAGGAGCTTCACAACAACAGGCAGCA 174
consensus_3152#1 CGCANNGCACCACAAGAAGCAANGCTACCAACAACAGGAGCTTCACAACAACAGGCNGCA 179
**** *** *********** ********************************* ***
consensus_3152#0 GAAGAAGCAC-CTTCGTCGCACAGGAGGGCAGCAGCACAGCAACAGGGAGAGGCTTTGTC 233
consensus_3152#1 NAAGAAGCACGCTTCGACGCACAGGANGGCAGCAGCACAGCAACAGGGAGAGGCTTTGGC 239
********* ***** ********* ******************************* *
consensus_3152#0 CGGGCTTCGCAGCTGGTCCCTAGTGCCAGGGNCGTCTCAGTGAGATCACACCAG-TCTGA 292
consensus_3152#1 CGGNCTNCGCAGCTGNACCCTAGNGCCAGGGTCGTNTNAGNGAGATCACACCAGCNCTGA 299
*** ** ******** ****** ******* *** * ** ************* ****
consensus_3152#0 TGACGCGGCATTGGCGTACAGGCTGCAGCAGGAGGAGTTCATGACGGCTTTCGAGAGCGA 352
consensus_3152#1 TGACGCGGCATTGGCGNACAGGCTGCAGCAGGAGGAGTTCATGACGGCTTTCNAGAGCGA 359
**************** *********************************** *******
consensus_3152#0 GGGCGAGAGGCAGCCACCTCGGAGCAGCAGCAGCACGGTGTCCGCTGCTCGAGCGAATCT 412
consensus_3152#1 GGGCNAGAGGCANCCACCTCGGAGCAGCANCAGCACGGTGTCCGCTGCTCNAGCGAATCT 419
**** ******* **************** ******************** *********
consensus_3152#0 GAGAGCTATGGCCTCCCGGGCCATTCGNCTCCGAGCTCGNGGCTGGCCTGTCTAGNTTTG 472
consensus_3152#1 GANAGCTATGGCCTCCNGGNNCATTCGTNTCCGANCTCGTGGCTGNCCTGTCTAGTTTTG 479
** ************* ** ****** ***** **** ***** ********* ****
consensus_3152#0 GTTGCCTGTTTGNTCTAATCTTTTCTGCTTACTAATTGCTGATTCTTCCTCATAGTCATA 532
consensus_3152#1 NCNGNCTGATTGTTCTAATCTNTTCTGCNTACTAATTGCTGATNCTTCCTCANAGTCATA 539
* *** *** ******** ****** ************** ******** *******
consensus_3152#0 GCAGAAGCGNCGTGGNGGTATTCTATTGAGTGGACAGATGTAATTNGCTACGAAATAA-T 591
consensus_3152#1 GCAGAAGTGACGTGGGG-TNTTCTACTGAGNGGACAGATGTNANTTGCTACGAAATNAAT 598
******* * ***** * * ***** **** ********** * * ********** * *
consensus_3152#0 GGTTCTT-CGCTGTGTCAAGTGNCCATNATT-CGTT-GGCACTCACAAGGTTCAGTTTGT 648
consensus_3152#1 GGNTCTTTCGCTGTGTCAAGTGGCCATCATNACGTTTGGCACTNACA------------- 645
** **** ************** **** ** **** ****** ***
consensus_3152#0 GTAACAGTCATATGACATGTCAAGNTAACTCAACTTGGTCAGCGTTATTGGTCCTTGCTA 708
consensus_3152#1 ------------------------------------------------------------
consensus_3152#0 ATTCGAACATAGTCGGGTTAGCCTGC 734
consensus_3152#1 --------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||