These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3152#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 734 fasta sequence [TCGCTTNATCCTCAGAAACCACGACGACTTGGCGCAACAAATCTCTCAAAGAAGTAACAGCATGGCACAAGGTGGCANTAAGAAGCAGCAGTTCCAATGGCATCGGCTACATCACGCAGCGCAGCACAAGAAGCAGCGCTACCAACAACAGGAGCTTCACAACAACAGGCAGCAGAAGAAGCACCTTCGTCGCACAGGAGGGCAGCAGCACAGCAACAGGGAGAGGCTTTGTCCGGGCTTCGCAGCTGGTCCCTAGTGCCAGGGNCGTCTCAGTGAGATCACACCAGTCTGATGACGCGGCATTGGCGTACAGGCTGCAGCAGGAGGAGTTCATGACGGCTTTCGAGAGCGAGGGCGAGAGGCAGCCACCTCGGAGCAGCAGCAGCACGGTGTCCGCTGCTCGAGCGAATCTGAGAGCTATGGCCTCCCGGGCCATTCGNCTCCGAGCTCGNGGCTGGCCTGTCTAGNTTTGGTTGCCTGTTTGNTCTAATCTTTTCTGCTTACTAATTGCTGATTCTTCCTCATAGTCATAGCAGAAGCGNCGTGGNGGTATTCTATTGAGTGGACAGATGTAATTNGCTACGAAATAATGGTTCTTCGCTGTGTCAAGTGNCCATNATTCGTTGGCACTCACAAGGTTCAGTTTGTGTAACAGTCATATGACATGTCAAGNTAACTCAACTTGGTCAGCGTTATTGGTCCTTGCTAATTCGAACATAGTCGGGTTAGCCTGC] [+] EMBL CB096477 [TCGCTTNATCCTCAGAAACCACGACGACTTGGCGCAACAAATCTCTCAAAGAAGTAACAGCATGGCACAAGGTGGCANTAAGAAGCAGCAGTTCCAATGGCATCGGCTACATCACGCAGCGCAGCACAAGAAGCAGCGCTACCAACAACAGGAGCTTCACAACAACAGGCAGCAGAAGAAGCACCTTCGTCGCACAGGAGGGCAGCAGCACAGCAACAGGGAGAGGCTTTGTCCGGGCTTCGCAGCTGGTCCCTAGTGCCAGGGNCGTCTCAGTGAGATCACACCAGTCTGATGACGCGGCATTGGCGTACAGGCTGCAGCAGGAGGAGTTCATGACGGCTTTCGAGAGCGAGGGCGAGAGGCAGCCACCTCGGAGCAGCAGCAGCACGGTGTCCGCTGCTCGAGCGAATCTGAGAGCTATGGCCTCCCGGGCCATTCGNCTCCGAGCTCGNGGCTGGCCTGTCTAGNTTTGGTTGCCTGTTTGNTCTAATCTTTTCTGCTTACTAATTGCTGATTCTTCCTCATAGTCATAGCAGAAGCGNCGTGGNGGTATTCTATTGAGTGGACAGATGTAATTNGCTACGAAATAATGGTTCTTCGCTGTGTCAAGTGNCCATNATTCGTTGGCACTCACAAGGTTCAGTTTGTGTAACAGTCATATGACATGTCAAGNTAACTCAACTTGGTCAGCGTTATTGGTCCTTGCTAATTCGAACATAGTCGGGTTAGCCTGC] consensusID : consensus_3152#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 645 fasta sequence [TTNAATCGCTTGATCCTCAGNAACCACGANGACTTGGCGCANCAAATCTCTCANAGAAGTAACACGCANGGCACAAGGTGGCATNAGAAGCNGNANGTCCAATGGCATNGGCTACATNACGCANNGCACCACAAGAAGCAANGCTACCAACAACAGGAGCTTCACAACAACAGGCNGCANAAGAAGCACGCTTCGACGCACAGGANGGCAGCAGCACAGCAACAGGGAGAGGCTTTGGCCGGNCTNCGCAGCTGNACCCTAGNGCCAGGGTCGTNTNAGNGAGATCACACCAGCNCTGATGACGCGGCATTGGCGNACAGGCTGCAGCAGGAGGAGTTCATGACGGCTTTCNAGAGCGAGGGCNAGAGGCANCCACCTCGGAGCAGCANCAGCACGGTGTCCGCTGCTCNAGCGAATCTGANAGCTATGGCCTCCNGGNNCATTCGTNTCCGANCTCGTGGCTGNCCTGTCTAGTTTTGNCNGNCTGATTGTTCTAATCTNTTCTGCNTACTAATTGCTGATNCTTCCTCANAGTCATAGCAGAAGTGACGTGGGGTNTTCTACTGAGNGGACAGATGTNANTTGCTACGAAATNAATGGNTCTTTCGCTGTGTCAAGTGGCCATCATNACGTTTGGCACTNACA] [+] EMBL CA765649 [TTNAATCGCTTGATCCTCAGNAACCACGANGACTTGGCGCANCAAATCTCTCANAGAAGTAACACGCANGGCACAAGGTGGCATNAGAAGCNGNANGTCCAATGGCATNGGCTACATNACGCANNGCACCACAAGAAGCAANGCTACCAACAACAGGAGCTTCACAACAACAGGCNGCANAAGAAGCACGCTTCGACGCACAGGANGGCAGCAGCACAGCAACAGGGAGAGGCTTTGGCCGGNCTNCGCAGCTGNACCCTAGNGCCAGGGTCGTNTNAGNGAGATCACACCAGCNCTGATGACGCGGCATTGGCGNACAGGCTGCAGCAGGAGGAGTTCATGACGGCTTTCNAGAGCGAGGGCNAGAGGCANCCACCTCGGAGCAGCANCAGCACGGTGTCCGCTGCTCNAGCGAATCTGANAGCTATGGCCTCCNGGNNCATTCGTNTCCGANCTCGTGGCTGNCCTGTCTAGTTTTGNCNGNCTGATTGTTCTAATCTNTTCTGCNTACTAATTGCTGATNCTTCCTCANAGTCATAGCAGAAGTGACGTGGGGTNTTCTACTGAGNGGACAGATGTNANTTGCTACGAAATNAATGGNTCTTTCGCTGTGTCAAGTGGCCATCATNACGTTTGGCACTNACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3152#0 -----TCGCTTNATCCTCAGAAACCACGACGACTTGGCGCAACAAATCTCTCAAAGAAGT 55 consensus_3152#1 TTNAATCGCTTGATCCTCAGNAACCACGANGACTTGGCGCANCAAATCTCTCANAGAAGT 60 ****** ******** ******** *********** *********** ****** consensus_3152#0 AACA-GCATGGCACAAGGTGGCANTAAGAAGCAGCAGTTCCAATGGCATCGGCTACATCA 114 consensus_3152#1 AACACGCANGGCACAAGGTGGCATNA-GAAGCNGNANGTCCAATGGCATNGGCTACATNA 119 **** *** ************** * ***** * * *********** ******** * consensus_3152#0 CGCAGCGCAGCACAAGAAGCAGCGCTACCAACAACAGGAGCTTCACAACAACAGGCAGCA 174 consensus_3152#1 CGCANNGCACCACAAGAAGCAANGCTACCAACAACAGGAGCTTCACAACAACAGGCNGCA 179 **** *** *********** ********************************* *** consensus_3152#0 GAAGAAGCAC-CTTCGTCGCACAGGAGGGCAGCAGCACAGCAACAGGGAGAGGCTTTGTC 233 consensus_3152#1 NAAGAAGCACGCTTCGACGCACAGGANGGCAGCAGCACAGCAACAGGGAGAGGCTTTGGC 239 ********* ***** ********* ******************************* * consensus_3152#0 CGGGCTTCGCAGCTGGTCCCTAGTGCCAGGGNCGTCTCAGTGAGATCACACCAG-TCTGA 292 consensus_3152#1 CGGNCTNCGCAGCTGNACCCTAGNGCCAGGGTCGTNTNAGNGAGATCACACCAGCNCTGA 299 *** ** ******** ****** ******* *** * ** ************* **** consensus_3152#0 TGACGCGGCATTGGCGTACAGGCTGCAGCAGGAGGAGTTCATGACGGCTTTCGAGAGCGA 352 consensus_3152#1 TGACGCGGCATTGGCGNACAGGCTGCAGCAGGAGGAGTTCATGACGGCTTTCNAGAGCGA 359 **************** *********************************** ******* consensus_3152#0 GGGCGAGAGGCAGCCACCTCGGAGCAGCAGCAGCACGGTGTCCGCTGCTCGAGCGAATCT 412 consensus_3152#1 GGGCNAGAGGCANCCACCTCGGAGCAGCANCAGCACGGTGTCCGCTGCTCNAGCGAATCT 419 **** ******* **************** ******************** ********* consensus_3152#0 GAGAGCTATGGCCTCCCGGGCCATTCGNCTCCGAGCTCGNGGCTGGCCTGTCTAGNTTTG 472 consensus_3152#1 GANAGCTATGGCCTCCNGGNNCATTCGTNTCCGANCTCGTGGCTGNCCTGTCTAGTTTTG 479 ** ************* ** ****** ***** **** ***** ********* **** consensus_3152#0 GTTGCCTGTTTGNTCTAATCTTTTCTGCTTACTAATTGCTGATTCTTCCTCATAGTCATA 532 consensus_3152#1 NCNGNCTGATTGTTCTAATCTNTTCTGCNTACTAATTGCTGATNCTTCCTCANAGTCATA 539 * *** *** ******** ****** ************** ******** ******* consensus_3152#0 GCAGAAGCGNCGTGGNGGTATTCTATTGAGTGGACAGATGTAATTNGCTACGAAATAA-T 591 consensus_3152#1 GCAGAAGTGACGTGGGG-TNTTCTACTGAGNGGACAGATGTNANTTGCTACGAAATNAAT 598 ******* * ***** * * ***** **** ********** * * ********** * * consensus_3152#0 GGTTCTT-CGCTGTGTCAAGTGNCCATNATT-CGTT-GGCACTCACAAGGTTCAGTTTGT 648 consensus_3152#1 GGNTCTTTCGCTGTGTCAAGTGGCCATCATNACGTTTGGCACTNACA------------- 645 ** **** ************** **** ** **** ****** *** consensus_3152#0 GTAACAGTCATATGACATGTCAAGNTAACTCAACTTGGTCAGCGTTATTGGTCCTTGCTA 708 consensus_3152#1 ------------------------------------------------------------ consensus_3152#0 ATTCGAACATAGTCGGGTTAGCCTGC 734 consensus_3152#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||