Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3160 cluster # 3160       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3160#0 length = 1047 sequences # 2  

consensusID : consensus_3160#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1047
fasta sequence
                              [ACGGAGCACTAGCAGAAGTGGCAGAGAGGAAGAGTAACCTAGCTTGTTGATTCCGCCGCCATGGAGAAGGCGCTCGTGGAGCGGCTGGAGGCGGCGGTGGCGCGCCTCGAGGCCGCCGTGGCCTCCGGGGCCTCGCTGTCGGCGGCGCCGCGGGACCTCGGGGACGGGCTGGACGCGGCGGCGGCGGCGTCGGATCCGGCGATCGTGGCCTACGACGAGTTCGTCGCCGGGGCCGTCGGCCGCCTCACCGCCGCGGCCGATAAGATCGGAGGGAAGGTGCTCGACGCCACCAAGGTCCTCGCCGAGGCCTTCTCCGTCTCCAAGGACCGCCTCGTCCAGGCCAAGCAGCTCCAGAAACCTGCATCAATGGCTGATGCACAAGACTTCTTTAAGCCGCTGAATGATGTTATTGCGAAAGCAATTGCGATGACTGAAGGAAGGAGGCCTGACTATTTCAACCATATCAAGAGTGTTGCCGACAGTCTCACTGCTTTGGCGTGGGTTGGCTTCCTAGGAAAGGATTGTGGCATGAGTTTCCCTACAGCACATGTTGAAGAAAGTTGGCAGATGGCTGAGTTCTACAATAACAAGGTTCTTGTGGAGTACAAGAACAAAGATGCTGACCATGTAGAGTGGGCTACAGCTTTGAAGGAGCTATACATGCCTGGTTTACTGGATTTTGTTAAGAAACATTACCCTCTTGGTCCTTCCTGGGGTCCAGTTGGAGGTGCACCTGTATCCCAACCAAAGGCTACTGCTCCAGCTCCTAAAGCACCAGGGGCTAAGGCTCCCCCTCCACCTGCTCTACCTTCGGCACCCCTTTTTACCACAGAGAAATCTCCTAAATCTGCACAGCCTAAAGAAGGAATGTCAGCTGTCTTTCAGGAGATTAGTTCAGGCAAAGCTGTGACCACAGGATTGCGAAAGGTTACTGATGACATGAAGGACTAAAAACCGGTCTGATANAAAGTGGTGTTGGTTAGCAGCAGCACTGCTTNTTCCGGGTTTCTGNTCCTGGAGAAGACCTCTCGTGCAAGGGTCTTTCTC]

[+] EMBL CB660484             [ACGGAGCACTAGCAGAAGTGGCAGAGAGGAAGAGTAACCTAGCTTGTTGATTCCGCCGCCATGGAGAAGGCGCTCGTGGAGCGGCTGGAGGCGGCGGTGGCGCGCCTCGAGGCCGCCGTGGCCTCCGGGGCCTCGCTGTCGGCGGCGCCGCGGGACCTCGGGGACGGGCTGGACGCGGCGGCGGCGGCGTCGGATCCGGCGATCGTGGCCTACGACGAGTTCGTCGCCGGGGCCGTCGGCCGCCTCACCGCCGCGGCCGATAAGATCGGAGGGAAGGTGCTCGACGCCACCAAGGTCCTCGCCGAGGCCTTCTCCGTCTCCAAGGACCGCCTCGTCCAGGCCAAGCAGCTCCAGAAACCTGCATCAATGGCTGATGCACAAGACTTCTTTAAGCCGCTGAATGATGTTATTGCGAAAGCAATTGCGATGACTGAAGGAAGGAGGCCTGACTATTTCAACCATATCAAGAGTGTTGCCGACAGTCTCACTGCTTTGGCGTGGGTTGGCTTCCTAGGAAAGGATTGTGGCATGAGTTTCCCTACAGCACATGTTGAAGAAAGTTGGCAGATGGCTGAGTTCTACAATAACAAGGTTCTTGTGGAGTACAAGAACAAAGATGCTGACCATGTAGAGTGGGCTACAGCTTTGAAGGAGCTATACATGCCTGGTTTACTGGATTTTGTTAAGAA                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU065474             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GCTAAAGCTTTGAAGGAGCTATACATGCCTGGTTTACGGGATTTTGTTAAGAAACATTACCCTCTTGGTCCTTCCTGGGGTCCAGTTGGAGGTGCACCTGTATCCCAACCAAAGGCTACTGCTCCAGCTCCTAAAGCACCAGGGGCTAAGGCTCCCCCTCCACCTGCTCTACCTTCGGCACCCCTTTTTACCACAGAGAAATCTCCTAAATCTGCACAGCCTAAAGAAGGAATGTCAGCTGTCTTTCAGGAGATTAGTTCAGGCAAAGCTGTGACCACAGGATTGCGAAAGGTTACTGATGACATGAAGGACTAAAAACCGGTCTGATANAAAGTGGTGTTGGTTAGCAGCAGCACTGCTTNTTCCGGGTTTCTGNTCCTGGAGAAGACCTCTCGTGCAAGGGTCTTTCTC]


>consensus_3160#0 ACGGAGCACTAGCAGAAGTGGCAGAGAGGAAGAGTAACCTAGCTTGTTGATTCCGCCGCC ATGGAGAAGGCGCTCGTGGAGCGGCTGGAGGCGGCGGTGGCGCGCCTCGAGGCCGCCGTG GCCTCCGGGGCCTCGCTGTCGGCGGCGCCGCGGGACCTCGGGGACGGGCTGGACGCGGCG GCGGCGGCGTCGGATCCGGCGATCGTGGCCTACGACGAGTTCGTCGCCGGGGCCGTCGGC CGCCTCACCGCCGCGGCCGATAAGATCGGAGGGAAGGTGCTCGACGCCACCAAGGTCCTC GCCGAGGCCTTCTCCGTCTCCAAGGACCGCCTCGTCCAGGCCAAGCAGCTCCAGAAACCT GCATCAATGGCTGATGCACAAGACTTCTTTAAGCCGCTGAATGATGTTATTGCGAAAGCA ATTGCGATGACTGAAGGAAGGAGGCCTGACTATTTCAACCATATCAAGAGTGTTGCCGAC AGTCTCACTGCTTTGGCGTGGGTTGGCTTCCTAGGAAAGGATTGTGGCATGAGTTTCCCT ACAGCACATGTTGAAGAAAGTTGGCAGATGGCTGAGTTCTACAATAACAAGGTTCTTGTG GAGTACAAGAACAAAGATGCTGACCATGTAGAGTGGGCTACAGCTTTGAAGGAGCTATAC ATGCCTGGTTTACTGGATTTTGTTAAGAAACATTACCCTCTTGGTCCTTCCTGGGGTCCA GTTGGAGGTGCACCTGTATCCCAACCAAAGGCTACTGCTCCAGCTCCTAAAGCACCAGGG GCTAAGGCTCCCCCTCCACCTGCTCTACCTTCGGCACCCCTTTTTACCACAGAGAAATCT CCTAAATCTGCACAGCCTAAAGAAGGAATGTCAGCTGTCTTTCAGGAGATTAGTTCAGGC AAAGCTGTGACCACAGGATTGCGAAAGGTTACTGATGACATGAAGGACTAAAAACCGGTC TGATANAAAGTGGTGTTGGTTAGCAGCAGCACTGCTTNTTCCGGGTTTCTGNTCCTGGAG AAGACCTCTCGTGCAAGGGTCTTTCTC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)