Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3179 cluster # 3179       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3179#0 length = 1007 sequences # 1  
consensus_3179#1 length = 809 sequences # 1  

consensusID : consensus_3179#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1007
fasta sequence
                              [CATCCAATTCCAAGCACTACTACTCATCACTAGCTCACACACAATTGCATACACCTAGCTCAAAAGCCTTTCTATTTCACTAATTGTGTGTGTTCATTGCTAGTTGCATTGTGGTTTTCTAGTTAATTAACAAGCTAGCTATACCTAGCTTATAATTAGCTAGAGTGTGAGCTTATAATTAGTTAGTTAGTTGAAAACAAGCTAAGATGAGGAGCAAGGCGTCCATGTTCTTGAAGCAGATGGTGTCGACGATCGTGGCGGTGGTGAAGGCGAAGTCGACGGCGGTGAGGGCCAAGACGAGCGCCATGAAGACGCGGCTGCTCATCTTCGGCGTCCTCCGCAACCGGAAGCTCCTCGCCACCGCCATCAACCACAAGATCCACGCCATCATGGGCGGCGCCGCCGCCCAGGACACCACCAACGACGGTGGCGTCGCCGGAGTGGAGGACGACGACGGCGGCGGCAGCAAGAAGGCCGTGGTGCTGTGCAACACCGCGCCGAGCTTCCTCACGGAGCGCGGCTACTACGATCACGCCGGCGAGGAGGAAGAGGAGGAGGAGGACAGCGACGAGTACCTGACGCACTCGTTGTTCCAGGAGGAAGACGACGAGGACGACGAGCTGGTGAACGCGCCGGGGTCGGTGATCGACCTGGTGCGCGACGCCAAGGAAGGGGAAGGCGGCGAGTTCCGGCTGGAGGACGAGATCGACCACGTCGCCGACGTGTTCATCCGCCGCATCCACAAGCAGCTCAAGCTCCAGAAGCTCGACTCCTTCAAGAGGTTCTGCGAGATGCTCGAGAGGAGCGCCTAAGTTCATACCCAGATCGCCAAACTTTTTGGCTCACTGTGCATGGTGAAGAAAAAAAAACCTTTTTTTTACCGTTAAGCCAAGGTTAATTAATTGATTAATTACACACACAACTTGGTGACTTTTGATCCATGCACGCATGTAAGTAGAGAGAATAAAGTGACAAAGATATATACTTCTCTTGTAGAAGGGGTTCAC]

[+] EMBL AK107298             [CATCCAATTCCAAGCACTACTACTCATCACTAGCTCACACACAATTGCATACACCTAGCTCAAAAGCCTTTCTATTTCACTAATTGTGTGTGTTCATTGCTAGTTGCATTGTGGTTTTCTAGTTAATTAACAAGCTAGCTATACCTAGCTTATAATTAGCTAGAGTGTGAGCTTATAATTAGTTAGTTAGTTGAAAACAAGCTAAGATGAGGAGCAAGGCGTCCATGTTCTTGAAGCAGATGGTGTCGACGATCGTGGCGGTGGTGAAGGCGAAGTCGACGGCGGTGAGGGCCAAGACGAGCGCCATGAAGACGCGGCTGCTCATCTTCGGCGTCCTCCGCAACCGGAAGCTCCTCGCCACCGCCATCAACCACAAGATCCACGCCATCATGGGCGGCGCCGCCGCCCAGGACACCACCAACGACGGTGGCGTCGCCGGAGTGGAGGACGACGACGGCGGCGGCAGCAAGAAGGCCGTGGTGCTGTGCAACACCGCGCCGAGCTTCCTCACGGAGCGCGGCTACTACGATCACGCCGGCGAGGAGGAAGAGGAGGAGGAGGACAGCGACGAGTACCTGACGCACTCGTTGTTCCAGGAGGAAGACGACGAGGACGACGAGCTGGTGAACGCGCCGGGGTCGGTGATCGACCTGGTGCGCGACGCCAAGGAAGGGGAAGGCGGCGAGTTCCGGCTGGAGGACGAGATCGACCACGTCGCCGACGTGTTCATCCGCCGCATCCACAAGCAGCTCAAGCTCCAGAAGCTCGACTCCTTCAAGAGGTTCTGCGAGATGCTCGAGAGGAGCGCCTAAGTTCATACCCAGATCGCCAAACTTTTTGGCTCACTGTGCATGGTGAAGAAAAAAAAACCTTTTTTTTACCGTTAAGCCAAGGTTAATTAATTGATTAATTACACACACAACTTGGTGACTTTTGATCCATGCACGCATGTAAGTAGAGAGAATAAAGTGACAAAGATATATACTTCTCTTGTAGAAGGGGTTCAC]


>consensus_3179#0 CATCCAATTCCAAGCACTACTACTCATCACTAGCTCACACACAATTGCATACACCTAGCT CAAAAGCCTTTCTATTTCACTAATTGTGTGTGTTCATTGCTAGTTGCATTGTGGTTTTCT AGTTAATTAACAAGCTAGCTATACCTAGCTTATAATTAGCTAGAGTGTGAGCTTATAATT AGTTAGTTAGTTGAAAACAAGCTAAGATGAGGAGCAAGGCGTCCATGTTCTTGAAGCAGA TGGTGTCGACGATCGTGGCGGTGGTGAAGGCGAAGTCGACGGCGGTGAGGGCCAAGACGA GCGCCATGAAGACGCGGCTGCTCATCTTCGGCGTCCTCCGCAACCGGAAGCTCCTCGCCA CCGCCATCAACCACAAGATCCACGCCATCATGGGCGGCGCCGCCGCCCAGGACACCACCA ACGACGGTGGCGTCGCCGGAGTGGAGGACGACGACGGCGGCGGCAGCAAGAAGGCCGTGG TGCTGTGCAACACCGCGCCGAGCTTCCTCACGGAGCGCGGCTACTACGATCACGCCGGCG AGGAGGAAGAGGAGGAGGAGGACAGCGACGAGTACCTGACGCACTCGTTGTTCCAGGAGG AAGACGACGAGGACGACGAGCTGGTGAACGCGCCGGGGTCGGTGATCGACCTGGTGCGCG ACGCCAAGGAAGGGGAAGGCGGCGAGTTCCGGCTGGAGGACGAGATCGACCACGTCGCCG ACGTGTTCATCCGCCGCATCCACAAGCAGCTCAAGCTCCAGAAGCTCGACTCCTTCAAGA GGTTCTGCGAGATGCTCGAGAGGAGCGCCTAAGTTCATACCCAGATCGCCAAACTTTTTG GCTCACTGTGCATGGTGAAGAAAAAAAAACCTTTTTTTTACCGTTAAGCCAAGGTTAATT AATTGATTAATTACACACACAACTTGGTGACTTTTGATCCATGCACGCATGTAAGTAGAG AGAATAAAGTGACAAAGATATATACTTCTCTTGTAGAAGGGGTTCAC



consensusID : consensus_3179#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 809
fasta sequence
                              [AGGCGTCCATGTTCTTGAAGCAGATGGTATCGACGATCGTGGCGGTGGTGAAGGCGAAATCGACGGCGGTGAGGGCCAAGACGAGCGCCATGAAGACGCGGCTGCTCATCACTAGCTCACACACAATTGCATACACATAGCTCAAAAGCCTTTCTATTTCACTAATTGTGTGTGTTCATTGCTAGTTGCATTGTGGTTTTCTAGTTAATTAACAAGCTAGCTATACCTAGCTTATAATTAGCTAGAGTGTGAGCTTATAATTAGTTAGTTAGTTGAAAACAAGCTAAGATGAAGAGCAAGGCGTCCATGTTCTTGAAGCAGATGGTATCGACGATCGTGGCGGTGGTGAAGGCGAAATCGACGGCGGTGAGGGCCAAGACGAGCGCCATGAAGACGCGGCTGCTCATCTTCGGCGTCCTCCGCAACCGGAAGCTCCTCGCCACCGCAATCAACCACAAGATCCACGCCATCATGGGCGGCGCCGCCGCCCAGGACACCACCAACGACGGTGGCGTCACCGGAGTGGAGGACGACGACGGCGGCGGCAGCAAGAAGGCCCGTGGTGCTGTACAACACCGCGCCGAGCTTCCTCACGGAGCGCGGCTACTACGATCACGCCGGCGAGGAGGAAGAGGAGGAGGAGGACAGCGACGAGTACCTGACGCACTCGTTGGTNCAGGAGGAAGACGACAAGGACGACGAGCTGGTGAACGCGCCCGGGGTCGGTGATCGANCTGGTGCGCGACGCCCAGGAAGGGGAANGCNGGCGAGTTCCGGCTGGAGGACGAGATCGANCACGTNGGCCGACG]

[+] EMBL CA765814             [AGGCGTCCATGTTCTTGAAGCAGATGGTATCGACGATCGTGGCGGTGGTGAAGGCGAAATCGACGGCGGTGAGGGCCAAGACGAGCGCCATGAAGACGCGGCTGCTCATCACTAGCTCACACACAATTGCATACACATAGCTCAAAAGCCTTTCTATTTCACTAATTGTGTGTGTTCATTGCTAGTTGCATTGTGGTTTTCTAGTTAATTAACAAGCTAGCTATACCTAGCTTATAATTAGCTAGAGTGTGAGCTTATAATTAGTTAGTTAGTTGAAAACAAGCTAAGATGAAGAGCAAGGCGTCCATGTTCTTGAAGCAGATGGTATCGACGATCGTGGCGGTGGTGAAGGCGAAATCGACGGCGGTGAGGGCCAAGACGAGCGCCATGAAGACGCGGCTGCTCATCTTCGGCGTCCTCCGCAACCGGAAGCTCCTCGCCACCGCAATCAACCACAAGATCCACGCCATCATGGGCGGCGCCGCCGCCCAGGACACCACCAACGACGGTGGCGTCACCGGAGTGGAGGACGACGACGGCGGCGGCAGCAAGAAGGCCCGTGGTGCTGTACAACACCGCGCCGAGCTTCCTCACGGAGCGCGGCTACTACGATCACGCCGGCGAGGAGGAAGAGGAGGAGGAGGACAGCGACGAGTACCTGACGCACTCGTTGGTNCAGGAGGAAGACGACAAGGACGACGAGCTGGTGAACGCGCCCGGGGTCGGTGATCGANCTGGTGCGCGACGCCCAGGAAGGGGAANGCNGGCGAGTTCCGGCTGGAGGACGAGATCGANCACGTNGGCCGACG]


>consensus_3179#1 AGGCGTCCATGTTCTTGAAGCAGATGGTATCGACGATCGTGGCGGTGGTGAAGGCGAAAT CGACGGCGGTGAGGGCCAAGACGAGCGCCATGAAGACGCGGCTGCTCATCACTAGCTCAC ACACAATTGCATACACATAGCTCAAAAGCCTTTCTATTTCACTAATTGTGTGTGTTCATT GCTAGTTGCATTGTGGTTTTCTAGTTAATTAACAAGCTAGCTATACCTAGCTTATAATTA GCTAGAGTGTGAGCTTATAATTAGTTAGTTAGTTGAAAACAAGCTAAGATGAAGAGCAAG GCGTCCATGTTCTTGAAGCAGATGGTATCGACGATCGTGGCGGTGGTGAAGGCGAAATCG ACGGCGGTGAGGGCCAAGACGAGCGCCATGAAGACGCGGCTGCTCATCTTCGGCGTCCTC CGCAACCGGAAGCTCCTCGCCACCGCAATCAACCACAAGATCCACGCCATCATGGGCGGC GCCGCCGCCCAGGACACCACCAACGACGGTGGCGTCACCGGAGTGGAGGACGACGACGGC GGCGGCAGCAAGAAGGCCCGTGGTGCTGTACAACACCGCGCCGAGCTTCCTCACGGAGCG CGGCTACTACGATCACGCCGGCGAGGAGGAAGAGGAGGAGGAGGACAGCGACGAGTACCT GACGCACTCGTTGGTNCAGGAGGAAGACGACAAGGACGACGAGCTGGTGAACGCGCCCGG GGTCGGTGATCGANCTGGTGCGCGACGCCCAGGAAGGGGAANGCNGGCGAGTTCCGGCTG GAGGACGAGATCGANCACGTNGGCCGACG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3179#0      ------------------------------------------------------------
consensus_3179#1      AGGCGTCCATGTTCTTGAAGCAGATGGTATCGACGATCGTGGCGGTGGTGAAGGCGAAAT 60
                                                                                  

consensus_3179#0      ---------------------CATCCAATTCCAAG-CACTACTACTCATCACTAGCTCAC 38
consensus_3179#1      CGACGGCGGTGAGGGCCAAGACGAGCGCCATGAAGACGCGGCTGCTCATCACTAGCTCAC 120
                                           *   *      *** * *  ** ****************

consensus_3179#0      ACACAATTGCATACACCTAGCTCAAAAGCCTTTCTATTTCACTAATTGTGTGTGTTCATT 98
consensus_3179#1      ACACAATTGCATACACATAGCTCAAAAGCCTTTCTATTTCACTAATTGTGTGTGTTCATT 180
                      **************** *******************************************

consensus_3179#0      GCTAGTTGCATTGTGGTTTTCTAGTTAATTAACAAGCTAGCTATACCTAGCTTATAATTA 158
consensus_3179#1      GCTAGTTGCATTGTGGTTTTCTAGTTAATTAACAAGCTAGCTATACCTAGCTTATAATTA 240
                      ************************************************************

consensus_3179#0      GCTAGAGTGTGAGCTTATAATTAGTTAGTTAGTTGAAAACAAGCTAAGATGAGGAGCAAG 218
consensus_3179#1      GCTAGAGTGTGAGCTTATAATTAGTTAGTTAGTTGAAAACAAGCTAAGATGAAGAGCAAG 300
                      **************************************************** *******

consensus_3179#0      GCGTCCATGTTCTTGAAGCAGATGGTGTCGACGATCGTGGCGGTGGTGAAGGCGAAGTCG 278
consensus_3179#1      GCGTCCATGTTCTTGAAGCAGATGGTATCGACGATCGTGGCGGTGGTGAAGGCGAAATCG 360
                      ************************** ***************************** ***

consensus_3179#0      ACGGCGGTGAGGGCCAAGACGAGCGCCATGAAGACGCGGCTGCTCATCTTCGGCGTCCTC 338
consensus_3179#1      ACGGCGGTGAGGGCCAAGACGAGCGCCATGAAGACGCGGCTGCTCATCTTCGGCGTCCTC 420
                      ************************************************************

consensus_3179#0      CGCAACCGGAAGCTCCTCGCCACCGCCATCAACCACAAGATCCACGCCATCATGGGCGGC 398
consensus_3179#1      CGCAACCGGAAGCTCCTCGCCACCGCAATCAACCACAAGATCCACGCCATCATGGGCGGC 480
                      ************************** *********************************

consensus_3179#0      GCCGCCGCCCAGGACACCACCAACGACGGTGGCGTCGCCGGAGTGGAGGACGACGACGGC 458
consensus_3179#1      GCCGCCGCCCAGGACACCACCAACGACGGTGGCGTCACCGGAGTGGAGGACGACGACGGC 540
                      ************************************ ***********************

consensus_3179#0      GGCGGCAGCAAGAAGGCC-GTGGTGCTGTGCAACACCGCGCCGAGCTTCCTCACGGAGCG 517
consensus_3179#1      GGCGGCAGCAAGAAGGCCCGTGGTGCTGTACAACACCGCGCCGAGCTTCCTCACGGAGCG 600
                      ****************** ********** ******************************

consensus_3179#0      CGGCTACTACGATCACGCCGGCGAGGAGGAAGAGGAGGAGGAGGACAGCGACGAGTACCT 577
consensus_3179#1      CGGCTACTACGATCACGCCGGCGAGGAGGAAGAGGAGGAGGAGGACAGCGACGAGTACCT 660
                      ************************************************************

consensus_3179#0      GACGCACTCGTTGTTCCAGGAGGAAGACGACGAGGACGACGAGCTGGTGAACGCGCC-GG 636
consensus_3179#1      GACGCACTCGTTGGTNCAGGAGGAAGACGACAAGGACGACGAGCTGGTGAACGCGCCCGG 720
                      ************* * *************** ************************* **

consensus_3179#0      GGTCGGTGATCGACCTGGTGCGCGACGCCAAGGAAGGGGAAGGCGG-CGAGTTCCGGCTG 695
consensus_3179#1      GGTCGGTGATCGANCTGGTGCGCGACGCCCAGGAAGGGGAANGCNGGCGAGTTCCGGCTG 780
                      ************* *************** *********** ** * *************

consensus_3179#0      GAGGACGAGATCGACCACGTCG-CCGACGTGTTCATCCGCCGCATCCACAAGCAGCTCAA 754
consensus_3179#1      GAGGACGAGATCGANCACGTNGGCCGACG------------------------------- 809
                      ************** ***** * ******                               

consensus_3179#0      GCTCCAGAAGCTCGACTCCTTCAAGAGGTTCTGCGAGATGCTCGAGAGGAGCGCCTAAGT 814
consensus_3179#1      ------------------------------------------------------------
                                                                                  

consensus_3179#0      TCATACCCAGATCGCCAAACTTTTTGGCTCACTGTGCATGGTGAAGAAAAAAAAACCTTT 874
consensus_3179#1      ------------------------------------------------------------
                                                                                  

consensus_3179#0      TTTTTACCGTTAAGCCAAGGTTAATTAATTGATTAATTACACACACAACTTGGTGACTTT 934
consensus_3179#1      ------------------------------------------------------------
                                                                                  

consensus_3179#0      TGATCCATGCACGCATGTAAGTAGAGAGAATAAAGTGACAAAGATATATACTTCTCTTGT 994
consensus_3179#1      ------------------------------------------------------------
                                                                                  

consensus_3179#0      AGAAGGGGTTCAC 1007
consensus_3179#1      -------------
                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)