These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3179#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1007 fasta sequence [CATCCAATTCCAAGCACTACTACTCATCACTAGCTCACACACAATTGCATACACCTAGCTCAAAAGCCTTTCTATTTCACTAATTGTGTGTGTTCATTGCTAGTTGCATTGTGGTTTTCTAGTTAATTAACAAGCTAGCTATACCTAGCTTATAATTAGCTAGAGTGTGAGCTTATAATTAGTTAGTTAGTTGAAAACAAGCTAAGATGAGGAGCAAGGCGTCCATGTTCTTGAAGCAGATGGTGTCGACGATCGTGGCGGTGGTGAAGGCGAAGTCGACGGCGGTGAGGGCCAAGACGAGCGCCATGAAGACGCGGCTGCTCATCTTCGGCGTCCTCCGCAACCGGAAGCTCCTCGCCACCGCCATCAACCACAAGATCCACGCCATCATGGGCGGCGCCGCCGCCCAGGACACCACCAACGACGGTGGCGTCGCCGGAGTGGAGGACGACGACGGCGGCGGCAGCAAGAAGGCCGTGGTGCTGTGCAACACCGCGCCGAGCTTCCTCACGGAGCGCGGCTACTACGATCACGCCGGCGAGGAGGAAGAGGAGGAGGAGGACAGCGACGAGTACCTGACGCACTCGTTGTTCCAGGAGGAAGACGACGAGGACGACGAGCTGGTGAACGCGCCGGGGTCGGTGATCGACCTGGTGCGCGACGCCAAGGAAGGGGAAGGCGGCGAGTTCCGGCTGGAGGACGAGATCGACCACGTCGCCGACGTGTTCATCCGCCGCATCCACAAGCAGCTCAAGCTCCAGAAGCTCGACTCCTTCAAGAGGTTCTGCGAGATGCTCGAGAGGAGCGCCTAAGTTCATACCCAGATCGCCAAACTTTTTGGCTCACTGTGCATGGTGAAGAAAAAAAAACCTTTTTTTTACCGTTAAGCCAAGGTTAATTAATTGATTAATTACACACACAACTTGGTGACTTTTGATCCATGCACGCATGTAAGTAGAGAGAATAAAGTGACAAAGATATATACTTCTCTTGTAGAAGGGGTTCAC] [+] EMBL AK107298 [CATCCAATTCCAAGCACTACTACTCATCACTAGCTCACACACAATTGCATACACCTAGCTCAAAAGCCTTTCTATTTCACTAATTGTGTGTGTTCATTGCTAGTTGCATTGTGGTTTTCTAGTTAATTAACAAGCTAGCTATACCTAGCTTATAATTAGCTAGAGTGTGAGCTTATAATTAGTTAGTTAGTTGAAAACAAGCTAAGATGAGGAGCAAGGCGTCCATGTTCTTGAAGCAGATGGTGTCGACGATCGTGGCGGTGGTGAAGGCGAAGTCGACGGCGGTGAGGGCCAAGACGAGCGCCATGAAGACGCGGCTGCTCATCTTCGGCGTCCTCCGCAACCGGAAGCTCCTCGCCACCGCCATCAACCACAAGATCCACGCCATCATGGGCGGCGCCGCCGCCCAGGACACCACCAACGACGGTGGCGTCGCCGGAGTGGAGGACGACGACGGCGGCGGCAGCAAGAAGGCCGTGGTGCTGTGCAACACCGCGCCGAGCTTCCTCACGGAGCGCGGCTACTACGATCACGCCGGCGAGGAGGAAGAGGAGGAGGAGGACAGCGACGAGTACCTGACGCACTCGTTGTTCCAGGAGGAAGACGACGAGGACGACGAGCTGGTGAACGCGCCGGGGTCGGTGATCGACCTGGTGCGCGACGCCAAGGAAGGGGAAGGCGGCGAGTTCCGGCTGGAGGACGAGATCGACCACGTCGCCGACGTGTTCATCCGCCGCATCCACAAGCAGCTCAAGCTCCAGAAGCTCGACTCCTTCAAGAGGTTCTGCGAGATGCTCGAGAGGAGCGCCTAAGTTCATACCCAGATCGCCAAACTTTTTGGCTCACTGTGCATGGTGAAGAAAAAAAAACCTTTTTTTTACCGTTAAGCCAAGGTTAATTAATTGATTAATTACACACACAACTTGGTGACTTTTGATCCATGCACGCATGTAAGTAGAGAGAATAAAGTGACAAAGATATATACTTCTCTTGTAGAAGGGGTTCAC] consensusID : consensus_3179#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 809 fasta sequence [AGGCGTCCATGTTCTTGAAGCAGATGGTATCGACGATCGTGGCGGTGGTGAAGGCGAAATCGACGGCGGTGAGGGCCAAGACGAGCGCCATGAAGACGCGGCTGCTCATCACTAGCTCACACACAATTGCATACACATAGCTCAAAAGCCTTTCTATTTCACTAATTGTGTGTGTTCATTGCTAGTTGCATTGTGGTTTTCTAGTTAATTAACAAGCTAGCTATACCTAGCTTATAATTAGCTAGAGTGTGAGCTTATAATTAGTTAGTTAGTTGAAAACAAGCTAAGATGAAGAGCAAGGCGTCCATGTTCTTGAAGCAGATGGTATCGACGATCGTGGCGGTGGTGAAGGCGAAATCGACGGCGGTGAGGGCCAAGACGAGCGCCATGAAGACGCGGCTGCTCATCTTCGGCGTCCTCCGCAACCGGAAGCTCCTCGCCACCGCAATCAACCACAAGATCCACGCCATCATGGGCGGCGCCGCCGCCCAGGACACCACCAACGACGGTGGCGTCACCGGAGTGGAGGACGACGACGGCGGCGGCAGCAAGAAGGCCCGTGGTGCTGTACAACACCGCGCCGAGCTTCCTCACGGAGCGCGGCTACTACGATCACGCCGGCGAGGAGGAAGAGGAGGAGGAGGACAGCGACGAGTACCTGACGCACTCGTTGGTNCAGGAGGAAGACGACAAGGACGACGAGCTGGTGAACGCGCCCGGGGTCGGTGATCGANCTGGTGCGCGACGCCCAGGAAGGGGAANGCNGGCGAGTTCCGGCTGGAGGACGAGATCGANCACGTNGGCCGACG] [+] EMBL CA765814 [AGGCGTCCATGTTCTTGAAGCAGATGGTATCGACGATCGTGGCGGTGGTGAAGGCGAAATCGACGGCGGTGAGGGCCAAGACGAGCGCCATGAAGACGCGGCTGCTCATCACTAGCTCACACACAATTGCATACACATAGCTCAAAAGCCTTTCTATTTCACTAATTGTGTGTGTTCATTGCTAGTTGCATTGTGGTTTTCTAGTTAATTAACAAGCTAGCTATACCTAGCTTATAATTAGCTAGAGTGTGAGCTTATAATTAGTTAGTTAGTTGAAAACAAGCTAAGATGAAGAGCAAGGCGTCCATGTTCTTGAAGCAGATGGTATCGACGATCGTGGCGGTGGTGAAGGCGAAATCGACGGCGGTGAGGGCCAAGACGAGCGCCATGAAGACGCGGCTGCTCATCTTCGGCGTCCTCCGCAACCGGAAGCTCCTCGCCACCGCAATCAACCACAAGATCCACGCCATCATGGGCGGCGCCGCCGCCCAGGACACCACCAACGACGGTGGCGTCACCGGAGTGGAGGACGACGACGGCGGCGGCAGCAAGAAGGCCCGTGGTGCTGTACAACACCGCGCCGAGCTTCCTCACGGAGCGCGGCTACTACGATCACGCCGGCGAGGAGGAAGAGGAGGAGGAGGACAGCGACGAGTACCTGACGCACTCGTTGGTNCAGGAGGAAGACGACAAGGACGACGAGCTGGTGAACGCGCCCGGGGTCGGTGATCGANCTGGTGCGCGACGCCCAGGAAGGGGAANGCNGGCGAGTTCCGGCTGGAGGACGAGATCGANCACGTNGGCCGACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3179#0 ------------------------------------------------------------ consensus_3179#1 AGGCGTCCATGTTCTTGAAGCAGATGGTATCGACGATCGTGGCGGTGGTGAAGGCGAAAT 60 consensus_3179#0 ---------------------CATCCAATTCCAAG-CACTACTACTCATCACTAGCTCAC 38 consensus_3179#1 CGACGGCGGTGAGGGCCAAGACGAGCGCCATGAAGACGCGGCTGCTCATCACTAGCTCAC 120 * * *** * * ** **************** consensus_3179#0 ACACAATTGCATACACCTAGCTCAAAAGCCTTTCTATTTCACTAATTGTGTGTGTTCATT 98 consensus_3179#1 ACACAATTGCATACACATAGCTCAAAAGCCTTTCTATTTCACTAATTGTGTGTGTTCATT 180 **************** ******************************************* consensus_3179#0 GCTAGTTGCATTGTGGTTTTCTAGTTAATTAACAAGCTAGCTATACCTAGCTTATAATTA 158 consensus_3179#1 GCTAGTTGCATTGTGGTTTTCTAGTTAATTAACAAGCTAGCTATACCTAGCTTATAATTA 240 ************************************************************ consensus_3179#0 GCTAGAGTGTGAGCTTATAATTAGTTAGTTAGTTGAAAACAAGCTAAGATGAGGAGCAAG 218 consensus_3179#1 GCTAGAGTGTGAGCTTATAATTAGTTAGTTAGTTGAAAACAAGCTAAGATGAAGAGCAAG 300 **************************************************** ******* consensus_3179#0 GCGTCCATGTTCTTGAAGCAGATGGTGTCGACGATCGTGGCGGTGGTGAAGGCGAAGTCG 278 consensus_3179#1 GCGTCCATGTTCTTGAAGCAGATGGTATCGACGATCGTGGCGGTGGTGAAGGCGAAATCG 360 ************************** ***************************** *** consensus_3179#0 ACGGCGGTGAGGGCCAAGACGAGCGCCATGAAGACGCGGCTGCTCATCTTCGGCGTCCTC 338 consensus_3179#1 ACGGCGGTGAGGGCCAAGACGAGCGCCATGAAGACGCGGCTGCTCATCTTCGGCGTCCTC 420 ************************************************************ consensus_3179#0 CGCAACCGGAAGCTCCTCGCCACCGCCATCAACCACAAGATCCACGCCATCATGGGCGGC 398 consensus_3179#1 CGCAACCGGAAGCTCCTCGCCACCGCAATCAACCACAAGATCCACGCCATCATGGGCGGC 480 ************************** ********************************* consensus_3179#0 GCCGCCGCCCAGGACACCACCAACGACGGTGGCGTCGCCGGAGTGGAGGACGACGACGGC 458 consensus_3179#1 GCCGCCGCCCAGGACACCACCAACGACGGTGGCGTCACCGGAGTGGAGGACGACGACGGC 540 ************************************ *********************** consensus_3179#0 GGCGGCAGCAAGAAGGCC-GTGGTGCTGTGCAACACCGCGCCGAGCTTCCTCACGGAGCG 517 consensus_3179#1 GGCGGCAGCAAGAAGGCCCGTGGTGCTGTACAACACCGCGCCGAGCTTCCTCACGGAGCG 600 ****************** ********** ****************************** consensus_3179#0 CGGCTACTACGATCACGCCGGCGAGGAGGAAGAGGAGGAGGAGGACAGCGACGAGTACCT 577 consensus_3179#1 CGGCTACTACGATCACGCCGGCGAGGAGGAAGAGGAGGAGGAGGACAGCGACGAGTACCT 660 ************************************************************ consensus_3179#0 GACGCACTCGTTGTTCCAGGAGGAAGACGACGAGGACGACGAGCTGGTGAACGCGCC-GG 636 consensus_3179#1 GACGCACTCGTTGGTNCAGGAGGAAGACGACAAGGACGACGAGCTGGTGAACGCGCCCGG 720 ************* * *************** ************************* ** consensus_3179#0 GGTCGGTGATCGACCTGGTGCGCGACGCCAAGGAAGGGGAAGGCGG-CGAGTTCCGGCTG 695 consensus_3179#1 GGTCGGTGATCGANCTGGTGCGCGACGCCCAGGAAGGGGAANGCNGGCGAGTTCCGGCTG 780 ************* *************** *********** ** * ************* consensus_3179#0 GAGGACGAGATCGACCACGTCG-CCGACGTGTTCATCCGCCGCATCCACAAGCAGCTCAA 754 consensus_3179#1 GAGGACGAGATCGANCACGTNGGCCGACG------------------------------- 809 ************** ***** * ****** consensus_3179#0 GCTCCAGAAGCTCGACTCCTTCAAGAGGTTCTGCGAGATGCTCGAGAGGAGCGCCTAAGT 814 consensus_3179#1 ------------------------------------------------------------ consensus_3179#0 TCATACCCAGATCGCCAAACTTTTTGGCTCACTGTGCATGGTGAAGAAAAAAAAACCTTT 874 consensus_3179#1 ------------------------------------------------------------ consensus_3179#0 TTTTTACCGTTAAGCCAAGGTTAATTAATTGATTAATTACACACACAACTTGGTGACTTT 934 consensus_3179#1 ------------------------------------------------------------ consensus_3179#0 TGATCCATGCACGCATGTAAGTAGAGAGAATAAAGTGACAAAGATATATACTTCTCTTGT 994 consensus_3179#1 ------------------------------------------------------------ consensus_3179#0 AGAAGGGGTTCAC 1007 consensus_3179#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||