These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_318#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1618 fasta sequence [GGCAGTGGCAGAGCACGCCGCCCCGGGCTCCGGCTCCCCTCCTCCTCCCTACATGCTCGCGCGGCCGCACCATCCGGCGCCAAACCCTCCTCCCTCTCTCTCCGCGTCATTTTGGGCTTTTCTGGCGAAAATGCCACGGCGGCGCTGGACCGGTGGCGCCGTCGCGGCGAGCAGCATCCCTCTCTTCCCCATCCCACCCCCCGCAGCGCCAAAAATAGATGGCACTCGCGCCTCGCCTCTCTGCTTCCGCGCCCCACCTCTCGATCGCCCCCTTCCTCCTCCTCCTCCTCCCCCTCCCCTTCCCTCTCCCCCACGCGACCTCGCTGCTGGCATCGCGCGCCACCGCACGCGCTGGATCGATCGAAGGCCTGGCCGCGCCTTCCGCCTCCCCCCCCCCCCACGGCCGCCGATACCGACGACGGAGGCGCCGGCGGCCCGATTCTACCCCCCACCCCTGCACTGGTCGGCGATCGTTGCTTCCCCCCTCCCGCGGTGATCGCGCGCGACACCCATGGCTGCCACATTAAAAATTGTTCTTGGCTCCCATATATGGCTGGAAGATAAAGATATTAGCTTGGATTGATGGTGAGGTCTTCCGAATTGAGGGTCAAAAGGCCCATATCCGCACTACCAACGGAAATATGGTTGTTGCGAGCATATCAGACATTCATCCAAAGGACACAGAAGTGCATTCTGATGGAATTGATGATATGATAAGACTATCATACTTGCATGAGCCTGGTGTTTTAAACAATCTATCTGTTCGATATGCAAAAAATATAATTTACACCTATACTGGTAATATATTGATTGCAATCAATCCATTCCAAAGGTTGCCTCATCTTGCTGAACCCCATACTATGGAGAAGTACAAAGGTGCAAATTTCGGTGAGCTAGACCCTCATGTATTTGCAATTGCTGACATTTCTTACAGGCAAATGATGAATGAGAGAAAGAGCCACTCCATATTGGTGAGTGGTGAAAGTGGTGCTGGCAAGACTGAAACCACAAAGATGCTTATGAGATATCTTGCATTTTTGGGTGGACGGTCTAGAACAGGAGGGAGGACAGTTGAACAACAAGTTTTAGAATCTAATCCAGTCCTTGAAGCTTTTGGCAATGCAAAGACTGTTCGGAACAATAATTCAAGCCGGTTTGGCAAATTTGTTGAAATCCAGTTTGACAAGAGTGGGAAGATATCTGGTGCTGCCATTAGAACATACTTACTTGAAAGATCACGTGTTTGTCAAATCAATAGTCCAGAGAGAAACTACCATTGCTTTTACTTCCTATGTGCAGCACCATCGGAGGAAATTAGAAAGTATAATCTGGGTGACCCTTCGTCGTTTCACTATCTCAACCAATCTACTTGCATTAAAGTTGATGGGATTAGTGACAATGAGGAGTATCTTGCAACAAGAAGTGCTATGAATACAGTTGGCATAACTGAGCAGGAGCAGGAGGCTATATTCCGAGTTGTTGCTGCTGTGCTTCACCTTGGGAACATCAATTTTGTGAAAGGGAGAGAGGTAGATTCATCTGTAATAAAGGATGAGAAAGCTAGGTTCCATCTTAATGCAGCTGCAGAGCTTTTGATGTGTGATCATGGGAAGTTAGA] [+] EMBL AK121713 [GGCAGTGGCAGAGCACGCCGCCCCGGGCTCCGGCTCCCCTCCTCCTCCCTACATGCTCGCGCGGCCGCACCATCCGGCGCCAAACCCTCCTCCCTCTCTCTCCGCGTCATTTTGGGCTTTTCTGGCGAAAATGCCACGGCGGCGCTGGACCGGTGGCGCCGTCGCGGCGAGCAGCATCCCTCTCTTCCCCATCCCACCCCCCGCAGCGCCAAAAATAGATGGCACTCGCGCCTCGCCTCTCTGCTTCCGCGCCCCACCTCTCGATCGCCCCCTTCCTCCTCCTCCTCCTCCCCCTCCCCTTCCCTCTCCCCCACGCGACCTCGCTGCTGGCATCGCGCGCCACCGCACGCGCTGGATCGATCGAAGGCCTGGCCGCGCCTTCCGCCTCCCCCCCCCCCCACGGCCGCCGATACCGACGACGGAGGCGCCGGCGGCCCGATTCTACCCCCCACCCCTGCACTGGTCGGCGATCGTTGCTTCCCCCCTCCCGCGGTGATCGCGCGCGACACCCATGGCTGCCACATTAAAAATTGTTCTTGGCTCCCATATATGGCTGGAAGATAAAGATATTAGCTTGGATTGATGGTGAGGTCTTCCGAATTGAGGGTCAAAAGGCCCATATCCGCACTACCAACGGAAATATGGTTGTTGCGAGCATATCAGACATTCATCCAAAGGACACAGAAGTGCATTCTGATGGAATTGATGATATGATAAGACTATCATACTTGCATGAGCCTGGTGTTTTAAACAATCTATCTGTTCGATATGCAAAAAATATAATTTACACCTATACTGGTAATATATTGATTGCAATCAATCCATTCCAAAGGTTGCCTCATCTTGCTGAACCCCATACTATGGAGAAGTACAAAGGTGCAAATTTCGGTGAGCTAGACCCTCATGTATTTGCAATTGCTGACATTTCTTACAGGCAAATGATGAATGAGAGAAAGAGCCACTCCATATTGGTGAGTGGTGAAAGTGGTGCTGGCAAGACTGAAACCACAAAGATGCTTATGAGATATCTTGCATTTTTGGGTGGACGGTCTAGAACAGGAGGGAGGACAGTTGAACAACAAGTTTTAGAATCTAATCCAGTCCTTGAAGCTTTTGGCAATGCAAAGACTGTTCGGAACAATAATTCAAGCCGGTTTGGCAAATTTGTTGAAATCCAGTTTGACAAGAGTGGGAAGATATCTGGTGCTGCCATTAGAACATACTTACTTGAAAGATCACGTGTTTGTCAAATCAATAGTCCAGAGAGAAACTACCATTGCTTTTACTTCCTATGTGCAGCACCATCGGAGGAAATTAGAAAGTATAATCTGGGTGACCCTTCGTCGTTTCACTATCTCAACCAATCTACTTGCATTAAAGTTGATGGGATTAGTGACAATGAGGAGTATCTTGCAACAAGAAGTGCTATGAATACAGTTGGCATAACTGAGCAGGAGCAGGAGGCTATATTCCGAGTTGTTGCTGCTGTGCTTCACCTTGGGAACATCAATTTTGTGAAAGGGAGAGAGGTAGATTCATCTGTAATAAAGGATGAGAAAGCTAGGTTCCATCTTAATGCAGCTGCAGAGCTTTTGATGTGTGATCATGGGAAGTTAGA] consensusID : consensus_318#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1431 fasta sequence [TCCCACCACCACCACCACCACCACCTCCTCTCCTCTTCTCTCCAGGCGCGCCGCTGTGCCCCTGTGCTCACCTCTCGTCGCGGTCGCCCTCGACGGTTCCACCACCCGCGGACCCCGCTCGCCGCCGCCGCAGCCGTGCGCGGATCGCGACGACGCGAGGCGATCGGCGAGCGGCCCGGGGGAGGGGAGGAGATCGCCCGTCGGCGCCCCCCCGGCCCCGCCGAGCCGCGTCTCCTCCCGTCCGATCGCGGGGCTTCCTGGGGCTTCAGTGTGCGCCACTTCTCTCGGGACGGGACGGGACGGGCGCGATTGCGGCAGATGAGACATGGCTTCTATGTTAAACATTGTTATAGGCTCTCATGTCTGGGTGGAAGATAAAGATTCAGCTTGGGTTGATGGTGAGGTCTTCCGGATTGATGGTAAAAATGCCCATGTTCGCACAACCAAGGGAAAGACGGTTATTGCAAATGTATCAGATATACATCCTAAAGACACAGAAGCACCACCTGATGGAGTCGATGACATGACAAGGTTATCATACTTGCACGAGCCTGGTGTTTTAGATAATCTGGCTGTCAGATATGCAAGAAATCTAATCTATACCTATACCGGCAATATCCTGATTGCCATAAATCCGTTCCAAAGGCTGCCTAATCTTGTTGATGTCCGAACTATGGAAAAATACAAAGGTGCAAACCTTGGGGATCTAGATCCTCATGTATTTGCAATAGCTGATGTCTCTTACAGGCAAATGATGAATGAAGGAAGGAACAATTCCATTTTGGTCAGTGGTGAAAGTGGAGCTGGTAAGACTGAAACGACGAAACTGCTGATGAGATATCTTGCATATTTGGGTGGGCGGTCTGGAACAGGAGGAAGGACGGTTGAACAGCAGGTTTTAGAATCAAACCCAGTCCTTGAAGCTTTTGGGAATGCAAAAACTGTTCGGAACAACAATTCAAGTCGATTTGGTAAGTTCGTTGAAATCCAATTTGACAAGAGTGGGAAGATATCTGGCGCTGCTATTAGAACTTACTTGCTTGAGAGATCTCGAGTCTGCCAAATCAATAGTCCAGAGCGAAACTACCATTGCTTTTACTTCCTCTGTGCTGCGCCACCAGAGGATATAAAAAGGTATAAGCTGGGGGATCCATCTTCATTTCATTACCTCAATCAGTCGTCTTGCATTAGAGTTGATGGTATCAACGATGCTGAAGAGTATCTTGTAACTAGAAATGCTATGGATACAGTTGGCATCATTGAGCAAGAACAGGAAGCTATATTCCGGGTTGTTGCTGCTGTGCTGCATCTTGGAAATATTAATTTTGCAAAGGGGAGTGAGGTAGATTCATCTGTTATAAAGGATGACAAATCTAGATTCCATCTTAATACAGCCGCAGAGCTCTTGATGTGTGACTGCAAGAAGTTGGA] [+] EMBL AK101864 [TCCCACCACCACCACCACCACCACCTCCTCTCCTCTTCTCTCCAGGCGCGCCGCTGTGCCCCTGTGCTCACCTCTCGTCGCGGTCGCCCTCGACGGTTCCACCACCCGCGGACCCCGCTCGCCGCCGCCGCAGCCGTGCGCGGATCGCGACGACGCGAGGCGATCGGCGAGCGGCCCGGGGGAGGGGAGGAGATCGCCCGTCGGCGCCCCCCCGGCCCCGCCGAGCCGCGTCTCCTCCCGTCCGATCGCGGGGCTTCCTGGGGCTTCAGTGTGCGCCACTTCTCTCGGGACGGGACGGGACGGGCGCGATTGCGGCAGATGAGACATGGCTTCTATGTTAAACATTGTTATAGGCTCTCATGTCTGGGTGGAAGATAAAGATTCAGCTTGGGTTGATGGTGAGGTCTTCCGGATTGATGGTAAAAATGCCCATGTTCGCACAACCAAGGGAAAGACGGTTATTGCAAATGTATCAGATATACATCCTAAAGACACAGAAGCACCACCTGATGGAGTCGATGACATGACAAGGTTATCATACTTGCACGAGCCTGGTGTTTTAGATAATCTGGCTGTCAGATATGCAAGAAATCTAATCTATACCTATACCGGCAATATCCTGATTGCCATAAATCCGTTCCAAAGGCTGCCTAATCTTGTTGATGTCCGAACTATGGAAAAATACAAAGGTGCAAACCTTGGGGATCTAGATCCTCATGTATTTGCAATAGCTGATGTCTCTTACAGGCAAATGATGAATGAAGGAAGGAACAATTCCATTTTGGTCAGTGGTGAAAGTGGAGCTGGTAAGACTGAAACGACGAAACTGCTGATGAGATATCTTGCATATTTGGGTGGGCGGTCTGGAACAGGAGGAAGGACGGTTGAACAGCAGGTTTTAGAATCAAACCCAGTCCTTGAAGCTTTTGGGAATGCAAAAACTGTTCGGAACAACAATTCAAGTCGATTTGGTAAGTTCGTTGAAATCCAATTTGACAAGAGTGGGAAGATATCTGGCGCTGCTATTAGAACTTACTTGCTTGAGAGATCTCGAGTCTGCCAAATCAATAGTCCAGAGCGAAACTACCATTGCTTTTACTTCCTCTGTGCTGCGCCACCAGAGGATATAAAAAGGTATAAGCTGGGGGATCCATCTTCATTTCATTACCTCAATCAGTCGTCTTGCATTAGAGTTGATGGTATCAACGATGCTGAAGAGTATCTTGTAACTAGAAATGCTATGGATACAGTTGGCATCATTGAGCAAGAACAGGAAGCTATATTCCGGGTTGTTGCTGCTGTGCTGCATCTTGGAAATATTAATTTTGCAAAGGGGAGTGAGGTAGATTCATCTGTTATAAAGGATGACAAATCTAGATTCCATCTTAATACAGCCGCAGAGCTCTTGATGTGTGACTGCAAGAAGTTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_318#0 GGCAGTGGCAGAGCACGCCGCCCCGGGCTCCGGCTCCCCTCCTCCTCCCTACATGCTCGC 60 consensus_318#1 ------------------------------------------------------------ consensus_318#0 GCGGCCGCACCATCCGGCGCCAAACCCTCCTCCCTCTCTCTCCGCGTCATTTTGGGCTTT 120 consensus_318#1 ------------------------------------------------------------ consensus_318#0 TCTGGCGAAAATGCCACGGCGGCGCTGGACCGGTGGCGCCGTCGCGGCGAGCAGCATCCC 180 consensus_318#1 ---------------------------------TCCCACCACCACCACCACCACCA--CC 25 * * ** * * * * ** ** ** consensus_318#0 TCTCTTCCCCATCCCACCCCCCGCAGCGCCAAAAATAGATGGCACTCGCGCCTCGCCTCT 240 consensus_318#1 TCCTCTCCTCTTCTCTCCAGGCGCGCCGCTGTGCCC---CTGTGCTCACCTCTCGTC--- 79 ** *** * ** * ** *** *** * *** * **** * consensus_318#0 CTGCTTCCGCGCCCCACCTCTCGATCGCCCCCTTCCTCCTCCTCCTCCTCCCCCTCCCCT 300 consensus_318#1 --GCGGTCGCCCTCGACGGTTCCACCACCCGCGGACCCCGCTCGCCGCCGCCGCAGCCGT 137 ** *** * * ** ** * * *** * * ** * * * ** * ** * consensus_318#0 TCCCTCTCCCCCACGCGACCTCGCTGCTGGCATCGCGCGCCACCGCACGCGCTGGATCGA 360 consensus_318#1 GCGCGGATCGCGACG---ACGCGAGGCGATCGGCGAGCGGC-CCGGGGGAGGGGAGGAGA 193 * * * * *** * ** ** * ** *** * *** * * * ** consensus_318#0 TCGAAGGCCTGGCCGCGCCTTCC-GCCTCCCCCCCCCCCCACGGCCGCCGATACCGACGA 419 consensus_318#1 TCG----CCCGTCGGCGCCCCCCCGGCCCCGCCGAGCCGCGTCTCCTCCCGT-CCGATCG 248 *** ** * * ***** ** * * ** ** ** * ** ** * **** consensus_318#0 CGGAGGCGCCGGCGGCCCGATTCTACCCCCCACCCCTGCACTGGTCGGCGATCGTTGCTT 479 consensus_318#1 CGGGGCTTCCTGGGGCTTCAGTGTGCGCCACTTCTCT---CGGGACGGGACGGGACGGG- 304 *** * ** * *** * * * * ** * * ** * ** *** * * consensus_318#0 CCCCCCTCCCGCGGTGATCGCGCGCGACACCCATGGCTGCCACATTAAAAATTGTTCTTG 539 consensus_318#1 ---------CGCGATTGCGGCAGATGAGAC--ATGGCTTCTATGTTAAACATTGTTATAG 353 **** * ** ** ** ****** * * ***** ****** * * consensus_318#0 GCTCCCATATATGGCTGGAAGATAAAGATATTAGCTTGGATTGATGGTGAGGTCTTCCGA 599 consensus_318#1 GCTCTCATGTCTGGGTGGAAGATAAAGAT-TCAGCTTGGGTTGATGGTGAGGTCTTCCGG 412 **** *** * *** ************** * ******* ******************* consensus_318#0 ATTGAGGGTCAAAAGGCCCATATCCGCACTACCAACGGAAATATGGTTGTTGCGAGCATA 659 consensus_318#1 ATTGATGGTAAAAATGCCCATGTTCGCACAACCAAGGGAAAGACGGTTATTGCAAATGTA 472 ***** *** **** ****** * ***** ***** ***** * **** **** * ** consensus_318#0 TCAGACATTCATCCAAAGGACACAGAAGTGCATTCTGATGGAATTGATGATATGATAAGA 719 consensus_318#1 TCAGATATACATCCTAAAGACACAGAAGCACCACCTGATGGAGTCGATGACATGACAAGG 532 ***** ** ***** ** ********** * ******** * ***** **** *** consensus_318#0 CTATCATACTTGCATGAGCCTGGTGTTTTAAACAATCTATCTGTTCGATATGCAAAAAAT 779 consensus_318#1 TTATCATACTTGCACGAGCCTGGTGTTTTAGATAATCTGGCTGTCAGATATGCAAGAAAT 592 ************* *************** * ***** **** ********* **** consensus_318#0 ATAATTTACACCTATACTGGTAATATATTGATTGCAATCAATCCATTCCAAAGGTTGCCT 839 consensus_318#1 CTAATCTATACCTATACCGGCAATATCCTGATTGCCATAAATCCGTTCCAAAGGCTGCCT 652 **** ** ******** ** ***** ******* ** ***** ********* ***** consensus_318#0 CATCTTGCTGAACCCCATACTATGGAGAAGTACAAAGGTGCAAATTTCGGTGAGCTAGAC 899 consensus_318#1 AATCTTGTTGATGTCCGAACTATGGAAAAATACAAAGGTGCAAACCTTGGGGATCTAGAT 712 ****** *** ** ******** ** ************** * ** ** ***** consensus_318#0 CCTCATGTATTTGCAATTGCTGACATTTCTTACAGGCAAATGATGAATGAGAGAAAGAGC 959 consensus_318#1 CCTCATGTATTTGCAATAGCTGATGTCTCTTACAGGCAAATGATGAATGAAGGAAGGAAC 772 ***************** ***** * *********************** *** ** * consensus_318#0 CACTCCATATTGGTGAGTGGTGAAAGTGGTGCTGGCAAGACTGAAACCACAAAGATGCTT 1019 consensus_318#1 AATTCCATTTTGGTCAGTGGTGAAAGTGGAGCTGGTAAGACTGAAACGACGAAACTGCTG 832 * ***** ***** ************** ***** *********** ** ** **** consensus_318#0 ATGAGATATCTTGCATTTTTGGGTGGACGGTCTAGAACAGGAGGGAGGACAGTTGAACAA 1079 consensus_318#1 ATGAGATATCTTGCATATTTGGGTGGGCGGTCTGGAACAGGAGGAAGGACGGTTGAACAG 892 **************** ********* ****** ********** ***** ******** consensus_318#0 CAAGTTTTAGAATCTAATCCAGTCCTTGAAGCTTTTGGCAATGCAAAGACTGTTCGGAAC 1139 consensus_318#1 CAGGTTTTAGAATCAAACCCAGTCCTTGAAGCTTTTGGGAATGCAAAAACTGTTCGGAAC 952 ** *********** ** ******************** ******** ************ consensus_318#0 AATAATTCAAGCCGGTTTGGCAAATTTGTTGAAATCCAGTTTGACAAGAGTGGGAAGATA 1199 consensus_318#1 AACAATTCAAGTCGATTTGGTAAGTTCGTTGAAATCCAATTTGACAAGAGTGGGAAGATA 1012 ** ******** ** ***** ** ** *********** ********************* consensus_318#0 TCTGGTGCTGCCATTAGAACATACTTACTTGAAAGATCACGTGTTTGTCAAATCAATAGT 1259 consensus_318#1 TCTGGCGCTGCTATTAGAACTTACTTGCTTGAGAGATCTCGAGTCTGCCAAATCAATAGT 1072 ***** ***** ******** ***** ***** ***** ** ** ** ************ consensus_318#0 CCAGAGAGAAACTACCATTGCTTTTACTTCCTATGTGCAGCACCATCGGAGGAAATTAGA 1319 consensus_318#1 CCAGAGCGAAACTACCATTGCTTTTACTTCCTCTGTGCTGCGCCACCAGAGGATATAAAA 1132 ****** ************************* ***** ** *** * ***** ** * * consensus_318#0 AAGTATAATCTGGGTGACCCTTCGTCGTTTCACTATCTCAACCAATCTACTTGCATTAAA 1379 consensus_318#1 AGGTATAAGCTGGGGGATCCATCTTCATTTCATTACCTCAATCAGTCGTCTTGCATTAGA 1192 * ****** ***** ** ** ** ** ***** ** ***** ** ** ********* * consensus_318#0 GTTGATGGGATTAGTGACAATGAGGAGTATCTTGCAACAAGAAGTGCTATGAATACAGTT 1439 consensus_318#1 GTTGATGGTATCAACGATGCTGAAGAGTATCTTGTAACTAGAAATGCTATGGATACAGTT 1252 ******** ** * ** *** ********** *** **** ******* ******** consensus_318#0 GGCATAACTGAGCAGGAGCAGGAGGCTATATTCCGAGTTGTTGCTGCTGTGCTTCACCTT 1499 consensus_318#1 GGCATCATTGAGCAAGAACAGGAAGCTATATTCCGGGTTGTTGCTGCTGTGCTGCATCTT 1312 ***** * ****** ** ***** *********** ***************** ** *** consensus_318#0 GGGAACATCAATTTTGTGAAAGGGAGAGAGGTAGATTCATCTGTAATAAAGGATGAGAAA 1559 consensus_318#1 GGAAATATTAATTTTGCAAAGGGGAGTGAGGTAGATTCATCTGTTATAAAGGATGACAAA 1372 ** ** ** ******* ** ***** ***************** *********** *** consensus_318#0 GCTAGGTTCCATCTTAATGCAGCTGCAGAGCTTTTGATGTGTGATCATGGGAAGTTAGA 1618 consensus_318#1 TCTAGATTCCATCTTAATACAGCCGCAGAGCTCTTGATGTGTGACTGCAAGAAGTTGGA 1431 **** ************ **** ******** *********** ****** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||