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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_318#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1618 fasta sequence
[GGCAGTGGCAGAGCACGCCGCCCCGGGCTCCGGCTCCCCTCCTCCTCCCTACATGCTCGCGCGGCCGCACCATCCGGCGCCAAACCCTCCTCCCTCTCTCTCCGCGTCATTTTGGGCTTTTCTGGCGAAAATGCCACGGCGGCGCTGGACCGGTGGCGCCGTCGCGGCGAGCAGCATCCCTCTCTTCCCCATCCCACCCCCCGCAGCGCCAAAAATAGATGGCACTCGCGCCTCGCCTCTCTGCTTCCGCGCCCCACCTCTCGATCGCCCCCTTCCTCCTCCTCCTCCTCCCCCTCCCCTTCCCTCTCCCCCACGCGACCTCGCTGCTGGCATCGCGCGCCACCGCACGCGCTGGATCGATCGAAGGCCTGGCCGCGCCTTCCGCCTCCCCCCCCCCCCACGGCCGCCGATACCGACGACGGAGGCGCCGGCGGCCCGATTCTACCCCCCACCCCTGCACTGGTCGGCGATCGTTGCTTCCCCCCTCCCGCGGTGATCGCGCGCGACACCCATGGCTGCCACATTAAAAATTGTTCTTGGCTCCCATATATGGCTGGAAGATAAAGATATTAGCTTGGATTGATGGTGAGGTCTTCCGAATTGAGGGTCAAAAGGCCCATATCCGCACTACCAACGGAAATATGGTTGTTGCGAGCATATCAGACATTCATCCAAAGGACACAGAAGTGCATTCTGATGGAATTGATGATATGATAAGACTATCATACTTGCATGAGCCTGGTGTTTTAAACAATCTATCTGTTCGATATGCAAAAAATATAATTTACACCTATACTGGTAATATATTGATTGCAATCAATCCATTCCAAAGGTTGCCTCATCTTGCTGAACCCCATACTATGGAGAAGTACAAAGGTGCAAATTTCGGTGAGCTAGACCCTCATGTATTTGCAATTGCTGACATTTCTTACAGGCAAATGATGAATGAGAGAAAGAGCCACTCCATATTGGTGAGTGGTGAAAGTGGTGCTGGCAAGACTGAAACCACAAAGATGCTTATGAGATATCTTGCATTTTTGGGTGGACGGTCTAGAACAGGAGGGAGGACAGTTGAACAACAAGTTTTAGAATCTAATCCAGTCCTTGAAGCTTTTGGCAATGCAAAGACTGTTCGGAACAATAATTCAAGCCGGTTTGGCAAATTTGTTGAAATCCAGTTTGACAAGAGTGGGAAGATATCTGGTGCTGCCATTAGAACATACTTACTTGAAAGATCACGTGTTTGTCAAATCAATAGTCCAGAGAGAAACTACCATTGCTTTTACTTCCTATGTGCAGCACCATCGGAGGAAATTAGAAAGTATAATCTGGGTGACCCTTCGTCGTTTCACTATCTCAACCAATCTACTTGCATTAAAGTTGATGGGATTAGTGACAATGAGGAGTATCTTGCAACAAGAAGTGCTATGAATACAGTTGGCATAACTGAGCAGGAGCAGGAGGCTATATTCCGAGTTGTTGCTGCTGTGCTTCACCTTGGGAACATCAATTTTGTGAAAGGGAGAGAGGTAGATTCATCTGTAATAAAGGATGAGAAAGCTAGGTTCCATCTTAATGCAGCTGCAGAGCTTTTGATGTGTGATCATGGGAAGTTAGA]
[+] EMBL AK121713 [GGCAGTGGCAGAGCACGCCGCCCCGGGCTCCGGCTCCCCTCCTCCTCCCTACATGCTCGCGCGGCCGCACCATCCGGCGCCAAACCCTCCTCCCTCTCTCTCCGCGTCATTTTGGGCTTTTCTGGCGAAAATGCCACGGCGGCGCTGGACCGGTGGCGCCGTCGCGGCGAGCAGCATCCCTCTCTTCCCCATCCCACCCCCCGCAGCGCCAAAAATAGATGGCACTCGCGCCTCGCCTCTCTGCTTCCGCGCCCCACCTCTCGATCGCCCCCTTCCTCCTCCTCCTCCTCCCCCTCCCCTTCCCTCTCCCCCACGCGACCTCGCTGCTGGCATCGCGCGCCACCGCACGCGCTGGATCGATCGAAGGCCTGGCCGCGCCTTCCGCCTCCCCCCCCCCCCACGGCCGCCGATACCGACGACGGAGGCGCCGGCGGCCCGATTCTACCCCCCACCCCTGCACTGGTCGGCGATCGTTGCTTCCCCCCTCCCGCGGTGATCGCGCGCGACACCCATGGCTGCCACATTAAAAATTGTTCTTGGCTCCCATATATGGCTGGAAGATAAAGATATTAGCTTGGATTGATGGTGAGGTCTTCCGAATTGAGGGTCAAAAGGCCCATATCCGCACTACCAACGGAAATATGGTTGTTGCGAGCATATCAGACATTCATCCAAAGGACACAGAAGTGCATTCTGATGGAATTGATGATATGATAAGACTATCATACTTGCATGAGCCTGGTGTTTTAAACAATCTATCTGTTCGATATGCAAAAAATATAATTTACACCTATACTGGTAATATATTGATTGCAATCAATCCATTCCAAAGGTTGCCTCATCTTGCTGAACCCCATACTATGGAGAAGTACAAAGGTGCAAATTTCGGTGAGCTAGACCCTCATGTATTTGCAATTGCTGACATTTCTTACAGGCAAATGATGAATGAGAGAAAGAGCCACTCCATATTGGTGAGTGGTGAAAGTGGTGCTGGCAAGACTGAAACCACAAAGATGCTTATGAGATATCTTGCATTTTTGGGTGGACGGTCTAGAACAGGAGGGAGGACAGTTGAACAACAAGTTTTAGAATCTAATCCAGTCCTTGAAGCTTTTGGCAATGCAAAGACTGTTCGGAACAATAATTCAAGCCGGTTTGGCAAATTTGTTGAAATCCAGTTTGACAAGAGTGGGAAGATATCTGGTGCTGCCATTAGAACATACTTACTTGAAAGATCACGTGTTTGTCAAATCAATAGTCCAGAGAGAAACTACCATTGCTTTTACTTCCTATGTGCAGCACCATCGGAGGAAATTAGAAAGTATAATCTGGGTGACCCTTCGTCGTTTCACTATCTCAACCAATCTACTTGCATTAAAGTTGATGGGATTAGTGACAATGAGGAGTATCTTGCAACAAGAAGTGCTATGAATACAGTTGGCATAACTGAGCAGGAGCAGGAGGCTATATTCCGAGTTGTTGCTGCTGTGCTTCACCTTGGGAACATCAATTTTGTGAAAGGGAGAGAGGTAGATTCATCTGTAATAAAGGATGAGAAAGCTAGGTTCCATCTTAATGCAGCTGCAGAGCTTTTGATGTGTGATCATGGGAAGTTAGA]
consensusID : consensus_318#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1431 fasta sequence
[TCCCACCACCACCACCACCACCACCTCCTCTCCTCTTCTCTCCAGGCGCGCCGCTGTGCCCCTGTGCTCACCTCTCGTCGCGGTCGCCCTCGACGGTTCCACCACCCGCGGACCCCGCTCGCCGCCGCCGCAGCCGTGCGCGGATCGCGACGACGCGAGGCGATCGGCGAGCGGCCCGGGGGAGGGGAGGAGATCGCCCGTCGGCGCCCCCCCGGCCCCGCCGAGCCGCGTCTCCTCCCGTCCGATCGCGGGGCTTCCTGGGGCTTCAGTGTGCGCCACTTCTCTCGGGACGGGACGGGACGGGCGCGATTGCGGCAGATGAGACATGGCTTCTATGTTAAACATTGTTATAGGCTCTCATGTCTGGGTGGAAGATAAAGATTCAGCTTGGGTTGATGGTGAGGTCTTCCGGATTGATGGTAAAAATGCCCATGTTCGCACAACCAAGGGAAAGACGGTTATTGCAAATGTATCAGATATACATCCTAAAGACACAGAAGCACCACCTGATGGAGTCGATGACATGACAAGGTTATCATACTTGCACGAGCCTGGTGTTTTAGATAATCTGGCTGTCAGATATGCAAGAAATCTAATCTATACCTATACCGGCAATATCCTGATTGCCATAAATCCGTTCCAAAGGCTGCCTAATCTTGTTGATGTCCGAACTATGGAAAAATACAAAGGTGCAAACCTTGGGGATCTAGATCCTCATGTATTTGCAATAGCTGATGTCTCTTACAGGCAAATGATGAATGAAGGAAGGAACAATTCCATTTTGGTCAGTGGTGAAAGTGGAGCTGGTAAGACTGAAACGACGAAACTGCTGATGAGATATCTTGCATATTTGGGTGGGCGGTCTGGAACAGGAGGAAGGACGGTTGAACAGCAGGTTTTAGAATCAAACCCAGTCCTTGAAGCTTTTGGGAATGCAAAAACTGTTCGGAACAACAATTCAAGTCGATTTGGTAAGTTCGTTGAAATCCAATTTGACAAGAGTGGGAAGATATCTGGCGCTGCTATTAGAACTTACTTGCTTGAGAGATCTCGAGTCTGCCAAATCAATAGTCCAGAGCGAAACTACCATTGCTTTTACTTCCTCTGTGCTGCGCCACCAGAGGATATAAAAAGGTATAAGCTGGGGGATCCATCTTCATTTCATTACCTCAATCAGTCGTCTTGCATTAGAGTTGATGGTATCAACGATGCTGAAGAGTATCTTGTAACTAGAAATGCTATGGATACAGTTGGCATCATTGAGCAAGAACAGGAAGCTATATTCCGGGTTGTTGCTGCTGTGCTGCATCTTGGAAATATTAATTTTGCAAAGGGGAGTGAGGTAGATTCATCTGTTATAAAGGATGACAAATCTAGATTCCATCTTAATACAGCCGCAGAGCTCTTGATGTGTGACTGCAAGAAGTTGGA]
[+] EMBL AK101864 [TCCCACCACCACCACCACCACCACCTCCTCTCCTCTTCTCTCCAGGCGCGCCGCTGTGCCCCTGTGCTCACCTCTCGTCGCGGTCGCCCTCGACGGTTCCACCACCCGCGGACCCCGCTCGCCGCCGCCGCAGCCGTGCGCGGATCGCGACGACGCGAGGCGATCGGCGAGCGGCCCGGGGGAGGGGAGGAGATCGCCCGTCGGCGCCCCCCCGGCCCCGCCGAGCCGCGTCTCCTCCCGTCCGATCGCGGGGCTTCCTGGGGCTTCAGTGTGCGCCACTTCTCTCGGGACGGGACGGGACGGGCGCGATTGCGGCAGATGAGACATGGCTTCTATGTTAAACATTGTTATAGGCTCTCATGTCTGGGTGGAAGATAAAGATTCAGCTTGGGTTGATGGTGAGGTCTTCCGGATTGATGGTAAAAATGCCCATGTTCGCACAACCAAGGGAAAGACGGTTATTGCAAATGTATCAGATATACATCCTAAAGACACAGAAGCACCACCTGATGGAGTCGATGACATGACAAGGTTATCATACTTGCACGAGCCTGGTGTTTTAGATAATCTGGCTGTCAGATATGCAAGAAATCTAATCTATACCTATACCGGCAATATCCTGATTGCCATAAATCCGTTCCAAAGGCTGCCTAATCTTGTTGATGTCCGAACTATGGAAAAATACAAAGGTGCAAACCTTGGGGATCTAGATCCTCATGTATTTGCAATAGCTGATGTCTCTTACAGGCAAATGATGAATGAAGGAAGGAACAATTCCATTTTGGTCAGTGGTGAAAGTGGAGCTGGTAAGACTGAAACGACGAAACTGCTGATGAGATATCTTGCATATTTGGGTGGGCGGTCTGGAACAGGAGGAAGGACGGTTGAACAGCAGGTTTTAGAATCAAACCCAGTCCTTGAAGCTTTTGGGAATGCAAAAACTGTTCGGAACAACAATTCAAGTCGATTTGGTAAGTTCGTTGAAATCCAATTTGACAAGAGTGGGAAGATATCTGGCGCTGCTATTAGAACTTACTTGCTTGAGAGATCTCGAGTCTGCCAAATCAATAGTCCAGAGCGAAACTACCATTGCTTTTACTTCCTCTGTGCTGCGCCACCAGAGGATATAAAAAGGTATAAGCTGGGGGATCCATCTTCATTTCATTACCTCAATCAGTCGTCTTGCATTAGAGTTGATGGTATCAACGATGCTGAAGAGTATCTTGTAACTAGAAATGCTATGGATACAGTTGGCATCATTGAGCAAGAACAGGAAGCTATATTCCGGGTTGTTGCTGCTGTGCTGCATCTTGGAAATATTAATTTTGCAAAGGGGAGTGAGGTAGATTCATCTGTTATAAAGGATGACAAATCTAGATTCCATCTTAATACAGCCGCAGAGCTCTTGATGTGTGACTGCAAGAAGTTGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_318#0 GGCAGTGGCAGAGCACGCCGCCCCGGGCTCCGGCTCCCCTCCTCCTCCCTACATGCTCGC 60
consensus_318#1 ------------------------------------------------------------
consensus_318#0 GCGGCCGCACCATCCGGCGCCAAACCCTCCTCCCTCTCTCTCCGCGTCATTTTGGGCTTT 120
consensus_318#1 ------------------------------------------------------------
consensus_318#0 TCTGGCGAAAATGCCACGGCGGCGCTGGACCGGTGGCGCCGTCGCGGCGAGCAGCATCCC 180
consensus_318#1 ---------------------------------TCCCACCACCACCACCACCACCA--CC 25
* * ** * * * * ** ** **
consensus_318#0 TCTCTTCCCCATCCCACCCCCCGCAGCGCCAAAAATAGATGGCACTCGCGCCTCGCCTCT 240
consensus_318#1 TCCTCTCCTCTTCTCTCCAGGCGCGCCGCTGTGCCC---CTGTGCTCACCTCTCGTC--- 79
** *** * ** * ** *** *** * *** * **** *
consensus_318#0 CTGCTTCCGCGCCCCACCTCTCGATCGCCCCCTTCCTCCTCCTCCTCCTCCCCCTCCCCT 300
consensus_318#1 --GCGGTCGCCCTCGACGGTTCCACCACCCGCGGACCCCGCTCGCCGCCGCCGCAGCCGT 137
** *** * * ** ** * * *** * * ** * * * ** * ** *
consensus_318#0 TCCCTCTCCCCCACGCGACCTCGCTGCTGGCATCGCGCGCCACCGCACGCGCTGGATCGA 360
consensus_318#1 GCGCGGATCGCGACG---ACGCGAGGCGATCGGCGAGCGGC-CCGGGGGAGGGGAGGAGA 193
* * * * *** * ** ** * ** *** * *** * * * **
consensus_318#0 TCGAAGGCCTGGCCGCGCCTTCC-GCCTCCCCCCCCCCCCACGGCCGCCGATACCGACGA 419
consensus_318#1 TCG----CCCGTCGGCGCCCCCCCGGCCCCGCCGAGCCGCGTCTCCTCCCGT-CCGATCG 248
*** ** * * ***** ** * * ** ** ** * ** ** * ****
consensus_318#0 CGGAGGCGCCGGCGGCCCGATTCTACCCCCCACCCCTGCACTGGTCGGCGATCGTTGCTT 479
consensus_318#1 CGGGGCTTCCTGGGGCTTCAGTGTGCGCCACTTCTCT---CGGGACGGGACGGGACGGG- 304
*** * ** * *** * * * * ** * * ** * ** *** * *
consensus_318#0 CCCCCCTCCCGCGGTGATCGCGCGCGACACCCATGGCTGCCACATTAAAAATTGTTCTTG 539
consensus_318#1 ---------CGCGATTGCGGCAGATGAGAC--ATGGCTTCTATGTTAAACATTGTTATAG 353
**** * ** ** ** ****** * * ***** ****** * *
consensus_318#0 GCTCCCATATATGGCTGGAAGATAAAGATATTAGCTTGGATTGATGGTGAGGTCTTCCGA 599
consensus_318#1 GCTCTCATGTCTGGGTGGAAGATAAAGAT-TCAGCTTGGGTTGATGGTGAGGTCTTCCGG 412
**** *** * *** ************** * ******* *******************
consensus_318#0 ATTGAGGGTCAAAAGGCCCATATCCGCACTACCAACGGAAATATGGTTGTTGCGAGCATA 659
consensus_318#1 ATTGATGGTAAAAATGCCCATGTTCGCACAACCAAGGGAAAGACGGTTATTGCAAATGTA 472
***** *** **** ****** * ***** ***** ***** * **** **** * **
consensus_318#0 TCAGACATTCATCCAAAGGACACAGAAGTGCATTCTGATGGAATTGATGATATGATAAGA 719
consensus_318#1 TCAGATATACATCCTAAAGACACAGAAGCACCACCTGATGGAGTCGATGACATGACAAGG 532
***** ** ***** ** ********** * ******** * ***** **** ***
consensus_318#0 CTATCATACTTGCATGAGCCTGGTGTTTTAAACAATCTATCTGTTCGATATGCAAAAAAT 779
consensus_318#1 TTATCATACTTGCACGAGCCTGGTGTTTTAGATAATCTGGCTGTCAGATATGCAAGAAAT 592
************* *************** * ***** **** ********* ****
consensus_318#0 ATAATTTACACCTATACTGGTAATATATTGATTGCAATCAATCCATTCCAAAGGTTGCCT 839
consensus_318#1 CTAATCTATACCTATACCGGCAATATCCTGATTGCCATAAATCCGTTCCAAAGGCTGCCT 652
**** ** ******** ** ***** ******* ** ***** ********* *****
consensus_318#0 CATCTTGCTGAACCCCATACTATGGAGAAGTACAAAGGTGCAAATTTCGGTGAGCTAGAC 899
consensus_318#1 AATCTTGTTGATGTCCGAACTATGGAAAAATACAAAGGTGCAAACCTTGGGGATCTAGAT 712
****** *** ** ******** ** ************** * ** ** *****
consensus_318#0 CCTCATGTATTTGCAATTGCTGACATTTCTTACAGGCAAATGATGAATGAGAGAAAGAGC 959
consensus_318#1 CCTCATGTATTTGCAATAGCTGATGTCTCTTACAGGCAAATGATGAATGAAGGAAGGAAC 772
***************** ***** * *********************** *** ** *
consensus_318#0 CACTCCATATTGGTGAGTGGTGAAAGTGGTGCTGGCAAGACTGAAACCACAAAGATGCTT 1019
consensus_318#1 AATTCCATTTTGGTCAGTGGTGAAAGTGGAGCTGGTAAGACTGAAACGACGAAACTGCTG 832
* ***** ***** ************** ***** *********** ** ** ****
consensus_318#0 ATGAGATATCTTGCATTTTTGGGTGGACGGTCTAGAACAGGAGGGAGGACAGTTGAACAA 1079
consensus_318#1 ATGAGATATCTTGCATATTTGGGTGGGCGGTCTGGAACAGGAGGAAGGACGGTTGAACAG 892
**************** ********* ****** ********** ***** ********
consensus_318#0 CAAGTTTTAGAATCTAATCCAGTCCTTGAAGCTTTTGGCAATGCAAAGACTGTTCGGAAC 1139
consensus_318#1 CAGGTTTTAGAATCAAACCCAGTCCTTGAAGCTTTTGGGAATGCAAAAACTGTTCGGAAC 952
** *********** ** ******************** ******** ************
consensus_318#0 AATAATTCAAGCCGGTTTGGCAAATTTGTTGAAATCCAGTTTGACAAGAGTGGGAAGATA 1199
consensus_318#1 AACAATTCAAGTCGATTTGGTAAGTTCGTTGAAATCCAATTTGACAAGAGTGGGAAGATA 1012
** ******** ** ***** ** ** *********** *********************
consensus_318#0 TCTGGTGCTGCCATTAGAACATACTTACTTGAAAGATCACGTGTTTGTCAAATCAATAGT 1259
consensus_318#1 TCTGGCGCTGCTATTAGAACTTACTTGCTTGAGAGATCTCGAGTCTGCCAAATCAATAGT 1072
***** ***** ******** ***** ***** ***** ** ** ** ************
consensus_318#0 CCAGAGAGAAACTACCATTGCTTTTACTTCCTATGTGCAGCACCATCGGAGGAAATTAGA 1319
consensus_318#1 CCAGAGCGAAACTACCATTGCTTTTACTTCCTCTGTGCTGCGCCACCAGAGGATATAAAA 1132
****** ************************* ***** ** *** * ***** ** * *
consensus_318#0 AAGTATAATCTGGGTGACCCTTCGTCGTTTCACTATCTCAACCAATCTACTTGCATTAAA 1379
consensus_318#1 AGGTATAAGCTGGGGGATCCATCTTCATTTCATTACCTCAATCAGTCGTCTTGCATTAGA 1192
* ****** ***** ** ** ** ** ***** ** ***** ** ** ********* *
consensus_318#0 GTTGATGGGATTAGTGACAATGAGGAGTATCTTGCAACAAGAAGTGCTATGAATACAGTT 1439
consensus_318#1 GTTGATGGTATCAACGATGCTGAAGAGTATCTTGTAACTAGAAATGCTATGGATACAGTT 1252
******** ** * ** *** ********** *** **** ******* ********
consensus_318#0 GGCATAACTGAGCAGGAGCAGGAGGCTATATTCCGAGTTGTTGCTGCTGTGCTTCACCTT 1499
consensus_318#1 GGCATCATTGAGCAAGAACAGGAAGCTATATTCCGGGTTGTTGCTGCTGTGCTGCATCTT 1312
***** * ****** ** ***** *********** ***************** ** ***
consensus_318#0 GGGAACATCAATTTTGTGAAAGGGAGAGAGGTAGATTCATCTGTAATAAAGGATGAGAAA 1559
consensus_318#1 GGAAATATTAATTTTGCAAAGGGGAGTGAGGTAGATTCATCTGTTATAAAGGATGACAAA 1372
** ** ** ******* ** ***** ***************** *********** ***
consensus_318#0 GCTAGGTTCCATCTTAATGCAGCTGCAGAGCTTTTGATGTGTGATCATGGGAAGTTAGA 1618
consensus_318#1 TCTAGATTCCATCTTAATACAGCCGCAGAGCTCTTGATGTGTGACTGCAAGAAGTTGGA 1431
**** ************ **** ******** *********** ****** **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||