cluster # 319

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Oryza sativa
cluster # 319 cluster # 319 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_319#0 length = 1497 sequences # 1

consensus_319#1 length = 362 sequences # 1

consensusID : consensus_319#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1497
fasta sequence

                              [AGCAAGAGCCCCTGCGTCGCTCTCCCCCAGAGGCGACTCGGGTGGCGAACCTAGCCGCCCCCTCCTCCCCCCGACCACCTTCCTCCTCCGCCTCGCCGCCACCACAAGGACAGCGGCGGCGGGGCTTCACGCCTCTTCCTACGCTGGCGGCCAAGGGAACCTCCGGTGGGTGGCGATGGCGACCGCCAGATCCGCCCCGCCGTGGCCGGATCTGGCGGGGTGGCGGCTGACGGCGGGGGTGGAGACGGCGATGGTAGGGGCGAGGGGGTGTGGGCGACGGTGGTCGGAATGGCGACGATGGAGGCGGCGGCGGGGATGGCGACGACGGTGGGGTTGGCAACGGCGATGGATTGGCGTCAGGGTGGCGGATCCGGCAGCGCCGGAGGTGGTTCCGGCGACCGGAGGCGGATCTGGCCCCCCGGCGGCCAGATCGAGCGAGGACTGTCGCGGCGGCAGTTCGGAGCTTGCGGGACGGCGGCGCGGACCTCACGGCGATGGCAGCGCGGAGCCCACGGCCCGGGCGGCGGCAGCAAGTGCCCGACGGCGGTTGGTGGTTGCAGTACGTCGGCAGCTGGCTGGTGGCGTCGGCAGGTGGCCGACGACATCAGTGGCGGGAGTTGCGGCCGGCAGTGGTGGTGACCGGGCAAGGTGGCCGTGGCGCGAGGAGGCGCGGTACTGGTGGTAGGCCGGCGAGGTTGCCGTTGCGACGCGGTCGATGGAGGTAGAGGACGACGCTGCGTGAGGTGACAAGGCGTGACCGGTGGCGGCTTGCGGAGACTGGTCGGCAGGGGGGCGGGTGCAGTGATGCCCACGTGTCGGCAGAGGTTTAGCTGGCGGTGGAGTATTGGGGTGTCAACGGTGGATAGGCAGGCGGTGGATGGCGGGTGAAAACCCAGCCCGACCTCGCTGGGCCGGCAACGGTGGCGCGCGAGCGTCATTCCCCTCTTGAGGGCGTTGTCGTGCCGTCTCACCTCCTCTAGTGGTGTTGCCGGGCGAAAGCCCAGTCGAGGTTCTTCTGACCTCGACGGTCGGCGGCGGCGGTTCTTTCGTTGCTTCTCTCCCTAGAGACGTTGGCTTGGCAGCACCCTTGTCGAAACCTCCCAATCAACTGCTACAAGTTCGTTCTAGAGTCTCTTCCTCTTGTATCAGCGTCCTAGTTTGTACAAGTTGGCCACGTCGGGGGGCCTAGGGGGGAGAGCGGTTCCATCTTCTCTCTCACCCTCTCTCCCTGAATCCCTGAGATGTGGATAGAGCGGGGTTTTGTGTCGGTTGTATAGATTGTTTTGGGCGATCCCAGTTGTAGCTCCTTTGTTGGCCTTGCGGTGGGCGGTCACGCTTAGCGGTGGCCGGTCCGGTGCAGGCCTTCTCCTGGGTGAGTGCTTGGTGTTGTCGGTGTGTGGGAGGTGGTATACCTTTTCTTTTCATGGTTACGGCCTCCCAGGGTTGTATCCTTGTATTTTTTTCTGCTCTATCAATATGAACTTCACACTGTCTTAT]

[+] EMBL AK119918             [AGCAAGAGCCCCTGCGTCGCTCTCCCCCAGAGGCGACTCGGGTGGCGAACCTAGCCGCCCCCTCCTCCCCCCGACCACCTTCCTCCTCCGCCTCGCCGCCACCACAAGGACAGCGGCGGCGGGGCTTCACGCCTCTTCCTACGCTGGCGGCCAAGGGAACCTCCGGTGGGTGGCGATGGCGACCGCCAGATCCGCCCCGCCGTGGCCGGATCTGGCGGGGTGGCGGCTGACGGCGGGGGTGGAGACGGCGATGGTAGGGGCGAGGGGGTGTGGGCGACGGTGGTCGGAATGGCGACGATGGAGGCGGCGGCGGGGATGGCGACGACGGTGGGGTTGGCAACGGCGATGGATTGGCGTCAGGGTGGCGGATCCGGCAGCGCCGGAGGTGGTTCCGGCGACCGGAGGCGGATCTGGCCCCCCGGCGGCCAGATCGAGCGAGGACTGTCGCGGCGGCAGTTCGGAGCTTGCGGGACGGCGGCGCGGACCTCACGGCGATGGCAGCGCGGAGCCCACGGCCCGGGCGGCGGCAGCAAGTGCCCGACGGCGGTTGGTGGTTGCAGTACGTCGGCAGCTGGCTGGTGGCGTCGGCAGGTGGCCGACGACATCAGTGGCGGGAGTTGCGGCCGGCAGTGGTGGTGACCGGGCAAGGTGGCCGTGGCGCGAGGAGGCGCGGTACTGGTGGTAGGCCGGCGAGGTTGCCGTTGCGACGCGGTCGATGGAGGTAGAGGACGACGCTGCGTGAGGTGACAAGGCGTGACCGGTGGCGGCTTGCGGAGACTGGTCGGCAGGGGGGCGGGTGCAGTGATGCCCACGTGTCGGCAGAGGTTTAGCTGGCGGTGGAGTATTGGGGTGTCAACGGTGGATAGGCAGGCGGTGGATGGCGGGTGAAAACCCAGCCCGACCTCGCTGGGCCGGCAACGGTGGCGCGCGAGCGTCATTCCCCTCTTGAGGGCGTTGTCGTGCCGTCTCACCTCCTCTAGTGGTGTTGCCGGGCGAAAGCCCAGTCGAGGTTCTTCTGACCTCGACGGTCGGCGGCGGCGGTTCTTTCGTTGCTTCTCTCCCTAGAGACGTTGGCTTGGCAGCACCCTTGTCGAAACCTCCCAATCAACTGCTACAAGTTCGTTCTAGAGTCTCTTCCTCTTGTATCAGCGTCCTAGTTTGTACAAGTTGGCCACGTCGGGGGGCCTAGGGGGGAGAGCGGTTCCATCTTCTCTCTCACCCTCTCTCCCTGAATCCCTGAGATGTGGATAGAGCGGGGTTTTGTGTCGGTTGTATAGATTGTTTTGGGCGATCCCAGTTGTAGCTCCTTTGTTGGCCTTGCGGTGGGCGGTCACGCTTAGCGGTGGCCGGTCCGGTGCAGGCCTTCTCCTGGGTGAGTGCTTGGTGTTGTCGGTGTGTGGGAGGTGGTATACCTTTTCTTTTCATGGTTACGGCCTCCCAGGGTTGTATCCTTGTATTTTTTTCTGCTCTATCAATATGAACTTCACACTGTCTTAT]




>consensus_319#0
AGCAAGAGCCCCTGCGTCGCTCTCCCCCAGAGGCGACTCGGGTGGCGAACCTAGCCGCCC
CCTCCTCCCCCCGACCACCTTCCTCCTCCGCCTCGCCGCCACCACAAGGACAGCGGCGGC
GGGGCTTCACGCCTCTTCCTACGCTGGCGGCCAAGGGAACCTCCGGTGGGTGGCGATGGC
GACCGCCAGATCCGCCCCGCCGTGGCCGGATCTGGCGGGGTGGCGGCTGACGGCGGGGGT
GGAGACGGCGATGGTAGGGGCGAGGGGGTGTGGGCGACGGTGGTCGGAATGGCGACGATG
GAGGCGGCGGCGGGGATGGCGACGACGGTGGGGTTGGCAACGGCGATGGATTGGCGTCAG
GGTGGCGGATCCGGCAGCGCCGGAGGTGGTTCCGGCGACCGGAGGCGGATCTGGCCCCCC
GGCGGCCAGATCGAGCGAGGACTGTCGCGGCGGCAGTTCGGAGCTTGCGGGACGGCGGCG
CGGACCTCACGGCGATGGCAGCGCGGAGCCCACGGCCCGGGCGGCGGCAGCAAGTGCCCG
ACGGCGGTTGGTGGTTGCAGTACGTCGGCAGCTGGCTGGTGGCGTCGGCAGGTGGCCGAC
GACATCAGTGGCGGGAGTTGCGGCCGGCAGTGGTGGTGACCGGGCAAGGTGGCCGTGGCG
CGAGGAGGCGCGGTACTGGTGGTAGGCCGGCGAGGTTGCCGTTGCGACGCGGTCGATGGA
GGTAGAGGACGACGCTGCGTGAGGTGACAAGGCGTGACCGGTGGCGGCTTGCGGAGACTG
GTCGGCAGGGGGGCGGGTGCAGTGATGCCCACGTGTCGGCAGAGGTTTAGCTGGCGGTGG
AGTATTGGGGTGTCAACGGTGGATAGGCAGGCGGTGGATGGCGGGTGAAAACCCAGCCCG
ACCTCGCTGGGCCGGCAACGGTGGCGCGCGAGCGTCATTCCCCTCTTGAGGGCGTTGTCG
TGCCGTCTCACCTCCTCTAGTGGTGTTGCCGGGCGAAAGCCCAGTCGAGGTTCTTCTGAC
CTCGACGGTCGGCGGCGGCGGTTCTTTCGTTGCTTCTCTCCCTAGAGACGTTGGCTTGGC
AGCACCCTTGTCGAAACCTCCCAATCAACTGCTACAAGTTCGTTCTAGAGTCTCTTCCTC
TTGTATCAGCGTCCTAGTTTGTACAAGTTGGCCACGTCGGGGGGCCTAGGGGGGAGAGCG
GTTCCATCTTCTCTCTCACCCTCTCTCCCTGAATCCCTGAGATGTGGATAGAGCGGGGTT
TTGTGTCGGTTGTATAGATTGTTTTGGGCGATCCCAGTTGTAGCTCCTTTGTTGGCCTTG
CGGTGGGCGGTCACGCTTAGCGGTGGCCGGTCCGGTGCAGGCCTTCTCCTGGGTGAGTGC
TTGGTGTTGTCGGTGTGTGGGAGGTGGTATACCTTTTCTTTTCATGGTTACGGCCTCCCA
GGGTTGTATCCTTGTATTTTTTTCTGCTCTATCAATATGAACTTCACACTGTCTTAT

consensusID : consensus_319#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 362
fasta sequence

                              [ACAGGNGGCGNGTGCAGTGATGCCCACGTGTCGGCAGAGGNTTAGCTGGCGGTGGAGTATTGCCGTGTAACGGCGGATAGGCANGCGGNGNATGNCGGNNGAANACCCANCCCGACCTCGCTGGGCCGGCAACGGTGGCGCGCGAGCGTNATTCCCCTCTTGAGGGCGNTGTCGTGCCGACTCACCTCCTCTAGTGGNGNTGCCGGGCGAAAGCCCANTCAAGGNTCTTCTGACCTNTACGGNCGGAGNNGNCGGATCTTTCGAGTGCTTCTCTCCCTAGAGACGTNGNCTTGGCAGCACCCTTGTCGAAACCTCCCAATCAACTGCTACAAGNTCGTTCTAGAGTNTNTTNCTCTNGANTC]

[+] EMBL CA764901             [ACAGGNGGCGNGTGCAGTGATGCCCACGTGTCGGCAGAGGNTTAGCTGGCGGTGGAGTATTGCCGTGTAACGGCGGATAGGCANGCGGNGNATGNCGGNNGAANACCCANCCCGACCTCGCTGGGCCGGCAACGGTGGCGCGCGAGCGTNATTCCCCTCTTGAGGGCGNTGTCGTGCCGACTCACCTCCTCTAGTGGNGNTGCCGGGCGAAAGCCCANTCAAGGNTCTTCTGACCTNTACGGNCGGAGNNGNCGGATCTTTCGAGTGCTTCTCTCCCTAGAGACGTNGNCTTGGCAGCACCCTTGTCGAAACCTCCCAATCAACTGCTACAAGNTCGTTCTAGAGTNTNTTNCTCTNGANTC]




>consensus_319#1
ACAGGNGGCGNGTGCAGTGATGCCCACGTGTCGGCAGAGGNTTAGCTGGCGGTGGAGTAT
TGCCGTGTAACGGCGGATAGGCANGCGGNGNATGNCGGNNGAANACCCANCCCGACCTCG
CTGGGCCGGCAACGGTGGCGCGCGAGCGTNATTCCCCTCTTGAGGGCGNTGTCGTGCCGA
CTCACCTCCTCTAGTGGNGNTGCCGGGCGAAAGCCCANTCAAGGNTCTTCTGACCTNTAC
GGNCGGAGNNGNCGGATCTTTCGAGTGCTTCTCTCCCTAGAGACGTNGNCTTGGCAGCAC
CCTTGTCGAAACCTCCCAATCAACTGCTACAAGNTCGTTCTAGAGTNTNTTNCTCTNGAN
TC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_319#0      AGCAAGAGCCCCTGCGTCGCTCTCCCCCAGAGGCGACTCGGGTGGCGAACCTAGCCGCCC 60
consensus_319#1      ------------------------------------------------------------
                                                                                 

consensus_319#0      CCTCCTCCCCCCGACCACCTTCCTCCTCCGCCTCGCCGCCACCACAAGGACAGCGGCGGC 120
consensus_319#1      ------------------------------------------------------------
                                                                                 

consensus_319#0      GGGGCTTCACGCCTCTTCCTACGCTGGCGGCCAAGGGAACCTCCGGTGGGTGGCGATGGC 180
consensus_319#1      ------------------------------------------------------------
                                                                                 

consensus_319#0      GACCGCCAGATCCGCCCCGCCGTGGCCGGATCTGGCGGGGTGGCGGCTGACGGCGGGGGT 240
consensus_319#1      ------------------------------------------------------------
                                                                                 

consensus_319#0      GGAGACGGCGATGGTAGGGGCGAGGGGGTGTGGGCGACGGTGGTCGGAATGGCGACGATG 300
consensus_319#1      ------------------------------------------------------------
                                                                                 

consensus_319#0      GAGGCGGCGGCGGGGATGGCGACGACGGTGGGGTTGGCAACGGCGATGGATTGGCGTCAG 360
consensus_319#1      ------------------------------------------------------------
                                                                                 

consensus_319#0      GGTGGCGGATCCGGCAGCGCCGGAGGTGGTTCCGGCGACCGGAGGCGGATCTGGCCCCCC 420
consensus_319#1      ------------------------------------------------------------
                                                                                 

consensus_319#0      GGCGGCCAGATCGAGCGAGGACTGTCGCGGCGGCAGTTCGGAGCTTGCGGGACGGCGGCG 480
consensus_319#1      ------------------------------------------------------------
                                                                                 

consensus_319#0      CGGACCTCACGGCGATGGCAGCGCGGAGCCCACGGCCCGGGCGGCGGCAGCAAGTGCCCG 540
consensus_319#1      ------------------------------------------------------------
                                                                                 

consensus_319#0      ACGGCGGTTGGTGGTTGCAGTACGTCGGCAGCTGGCTGGTGGCGTCGGCAGGTGGCCGAC 600
consensus_319#1      ------------------------------------------------------------
                                                                                 

consensus_319#0      GACATCAGTGGCGGGAGTTGCGGCCGGCAGTGGTGGTGACCGGGCAAGGTGGCCGTGGCG 660
consensus_319#1      ------------------------------------------------------------
                                                                                 

consensus_319#0      CGAGGAGGCGCGGTACTGGTGGTAGGCCGGCGAGGTTGCCGTTGCGACGCGGTCGATGGA 720
consensus_319#1      ------------------------------------------------------------
                                                                                 

consensus_319#0      GGTAGAGGACGACGCTGCGTGAGGTGACAAGGCGTGACCGGTGGCGGCTTGCGGAGACTG 780
consensus_319#1      ------------------------------------------------------------
                                                                                 

consensus_319#0      GTCGGCAGGGGGGCGGGTGCAGTGATGCCCACGTGTCGGCAGAGGTTTAGCTGGCGGTGG 840
consensus_319#1      ----ACAGGNGG-CGNGTGCAGTGATGCCCACGTGTCGGCAGAGGNTTAGCTGGCGGTGG 55
                          **** ** ** ***************************** **************

consensus_319#0      AGTATTGGGGTGTCAACGGTGGATAGGCAGGCGGTGGATGGCGGGTGAAAACCCAGCCCG 900
consensus_319#1      AGTATTGCCGTGT-AACGGCGGATAGGCANGCGGNGNATGNCGGNNGAANACCCANCCCG 114
                     *******  **** ***** ********* **** * *** ***  *** ***** ****

consensus_319#0      ACCTCGCTGGGCCGGCAACGGTGGCGCGCGAGCGTCATTCCCCTCTTGAGGGCGTTGTCG 960
consensus_319#1      ACCTCGCTGGGCCGGCAACGGTGGCGCGCGAGCGTNATTCCCCTCTTGAGGGCGNTGTCG 174
                     *********************************** ****************** *****

consensus_319#0      TGCCGTCTCACCTCCTCTAGTGGTGTTGCCGGGCGAAAGCCCAGTCGAGGTTCTTCTGAC 1020
consensus_319#1      TGCCGACTCACCTCCTCTAGTGGNGNTGCCGGGCGAAAGCCCANTCAAGGNTCTTCTGAC 234
                     ***** ***************** * ***************** ** *** *********

consensus_319#0      CTCGACGGTCGGCGGCGGCGGTTCTTTCGT-TGCTTCTCTCCCTAGAGACGTTGGCTTGG 1079
consensus_319#1      CTNTACGGNCGGAGNNGNCGGATCTTTCGAGTGCTTCTCTCCCTAGAGACGTNGNCTTGG 294
                     **  **** *** *  * *** *******  ********************* * *****

consensus_319#0      CAGCACCCTTGTCGAAACCTCCCAATCAACTGCTACAAGTTCGTTCTAGAGTCTCTTCCT 1139
consensus_319#1      CAGCACCCTTGTCGAAACCTCCCAATCAACTGCTACAAGNTCGTTCTAGAGTNTNTTNCT 354
                     *************************************** ************ * ** **

consensus_319#0      CTTGTATCAGCGTCCTAGTTTGTACAAGTTGGCCACGTCGGGGGGCCTAGGGGGGAGAGC 1199
consensus_319#1      CTNGANTC---------------------------------------------------- 362
                     ** *  **                                                    

consensus_319#0      GGTTCCATCTTCTCTCTCACCCTCTCTCCCTGAATCCCTGAGATGTGGATAGAGCGGGGT 1259
consensus_319#1      ------------------------------------------------------------
                                                                                 

consensus_319#0      TTTGTGTCGGTTGTATAGATTGTTTTGGGCGATCCCAGTTGTAGCTCCTTTGTTGGCCTT 1319
consensus_319#1      ------------------------------------------------------------
                                                                                 

consensus_319#0      GCGGTGGGCGGTCACGCTTAGCGGTGGCCGGTCCGGTGCAGGCCTTCTCCTGGGTGAGTG 1379
consensus_319#1      ------------------------------------------------------------
                                                                                 

consensus_319#0      CTTGGTGTTGTCGGTGTGTGGGAGGTGGTATACCTTTTCTTTTCATGGTTACGGCCTCCC 1439
consensus_319#1      ------------------------------------------------------------
                                                                                 

consensus_319#0      AGGGTTGTATCCTTGTATTTTTTTCTGCTCTATCAATATGAACTTCACACTGTCTTAT 1497
consensus_319#1      ----------------------------------------------------------