These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_319#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1497 fasta sequence [AGCAAGAGCCCCTGCGTCGCTCTCCCCCAGAGGCGACTCGGGTGGCGAACCTAGCCGCCCCCTCCTCCCCCCGACCACCTTCCTCCTCCGCCTCGCCGCCACCACAAGGACAGCGGCGGCGGGGCTTCACGCCTCTTCCTACGCTGGCGGCCAAGGGAACCTCCGGTGGGTGGCGATGGCGACCGCCAGATCCGCCCCGCCGTGGCCGGATCTGGCGGGGTGGCGGCTGACGGCGGGGGTGGAGACGGCGATGGTAGGGGCGAGGGGGTGTGGGCGACGGTGGTCGGAATGGCGACGATGGAGGCGGCGGCGGGGATGGCGACGACGGTGGGGTTGGCAACGGCGATGGATTGGCGTCAGGGTGGCGGATCCGGCAGCGCCGGAGGTGGTTCCGGCGACCGGAGGCGGATCTGGCCCCCCGGCGGCCAGATCGAGCGAGGACTGTCGCGGCGGCAGTTCGGAGCTTGCGGGACGGCGGCGCGGACCTCACGGCGATGGCAGCGCGGAGCCCACGGCCCGGGCGGCGGCAGCAAGTGCCCGACGGCGGTTGGTGGTTGCAGTACGTCGGCAGCTGGCTGGTGGCGTCGGCAGGTGGCCGACGACATCAGTGGCGGGAGTTGCGGCCGGCAGTGGTGGTGACCGGGCAAGGTGGCCGTGGCGCGAGGAGGCGCGGTACTGGTGGTAGGCCGGCGAGGTTGCCGTTGCGACGCGGTCGATGGAGGTAGAGGACGACGCTGCGTGAGGTGACAAGGCGTGACCGGTGGCGGCTTGCGGAGACTGGTCGGCAGGGGGGCGGGTGCAGTGATGCCCACGTGTCGGCAGAGGTTTAGCTGGCGGTGGAGTATTGGGGTGTCAACGGTGGATAGGCAGGCGGTGGATGGCGGGTGAAAACCCAGCCCGACCTCGCTGGGCCGGCAACGGTGGCGCGCGAGCGTCATTCCCCTCTTGAGGGCGTTGTCGTGCCGTCTCACCTCCTCTAGTGGTGTTGCCGGGCGAAAGCCCAGTCGAGGTTCTTCTGACCTCGACGGTCGGCGGCGGCGGTTCTTTCGTTGCTTCTCTCCCTAGAGACGTTGGCTTGGCAGCACCCTTGTCGAAACCTCCCAATCAACTGCTACAAGTTCGTTCTAGAGTCTCTTCCTCTTGTATCAGCGTCCTAGTTTGTACAAGTTGGCCACGTCGGGGGGCCTAGGGGGGAGAGCGGTTCCATCTTCTCTCTCACCCTCTCTCCCTGAATCCCTGAGATGTGGATAGAGCGGGGTTTTGTGTCGGTTGTATAGATTGTTTTGGGCGATCCCAGTTGTAGCTCCTTTGTTGGCCTTGCGGTGGGCGGTCACGCTTAGCGGTGGCCGGTCCGGTGCAGGCCTTCTCCTGGGTGAGTGCTTGGTGTTGTCGGTGTGTGGGAGGTGGTATACCTTTTCTTTTCATGGTTACGGCCTCCCAGGGTTGTATCCTTGTATTTTTTTCTGCTCTATCAATATGAACTTCACACTGTCTTAT] [+] EMBL AK119918 [AGCAAGAGCCCCTGCGTCGCTCTCCCCCAGAGGCGACTCGGGTGGCGAACCTAGCCGCCCCCTCCTCCCCCCGACCACCTTCCTCCTCCGCCTCGCCGCCACCACAAGGACAGCGGCGGCGGGGCTTCACGCCTCTTCCTACGCTGGCGGCCAAGGGAACCTCCGGTGGGTGGCGATGGCGACCGCCAGATCCGCCCCGCCGTGGCCGGATCTGGCGGGGTGGCGGCTGACGGCGGGGGTGGAGACGGCGATGGTAGGGGCGAGGGGGTGTGGGCGACGGTGGTCGGAATGGCGACGATGGAGGCGGCGGCGGGGATGGCGACGACGGTGGGGTTGGCAACGGCGATGGATTGGCGTCAGGGTGGCGGATCCGGCAGCGCCGGAGGTGGTTCCGGCGACCGGAGGCGGATCTGGCCCCCCGGCGGCCAGATCGAGCGAGGACTGTCGCGGCGGCAGTTCGGAGCTTGCGGGACGGCGGCGCGGACCTCACGGCGATGGCAGCGCGGAGCCCACGGCCCGGGCGGCGGCAGCAAGTGCCCGACGGCGGTTGGTGGTTGCAGTACGTCGGCAGCTGGCTGGTGGCGTCGGCAGGTGGCCGACGACATCAGTGGCGGGAGTTGCGGCCGGCAGTGGTGGTGACCGGGCAAGGTGGCCGTGGCGCGAGGAGGCGCGGTACTGGTGGTAGGCCGGCGAGGTTGCCGTTGCGACGCGGTCGATGGAGGTAGAGGACGACGCTGCGTGAGGTGACAAGGCGTGACCGGTGGCGGCTTGCGGAGACTGGTCGGCAGGGGGGCGGGTGCAGTGATGCCCACGTGTCGGCAGAGGTTTAGCTGGCGGTGGAGTATTGGGGTGTCAACGGTGGATAGGCAGGCGGTGGATGGCGGGTGAAAACCCAGCCCGACCTCGCTGGGCCGGCAACGGTGGCGCGCGAGCGTCATTCCCCTCTTGAGGGCGTTGTCGTGCCGTCTCACCTCCTCTAGTGGTGTTGCCGGGCGAAAGCCCAGTCGAGGTTCTTCTGACCTCGACGGTCGGCGGCGGCGGTTCTTTCGTTGCTTCTCTCCCTAGAGACGTTGGCTTGGCAGCACCCTTGTCGAAACCTCCCAATCAACTGCTACAAGTTCGTTCTAGAGTCTCTTCCTCTTGTATCAGCGTCCTAGTTTGTACAAGTTGGCCACGTCGGGGGGCCTAGGGGGGAGAGCGGTTCCATCTTCTCTCTCACCCTCTCTCCCTGAATCCCTGAGATGTGGATAGAGCGGGGTTTTGTGTCGGTTGTATAGATTGTTTTGGGCGATCCCAGTTGTAGCTCCTTTGTTGGCCTTGCGGTGGGCGGTCACGCTTAGCGGTGGCCGGTCCGGTGCAGGCCTTCTCCTGGGTGAGTGCTTGGTGTTGTCGGTGTGTGGGAGGTGGTATACCTTTTCTTTTCATGGTTACGGCCTCCCAGGGTTGTATCCTTGTATTTTTTTCTGCTCTATCAATATGAACTTCACACTGTCTTAT] consensusID : consensus_319#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence [ACAGGNGGCGNGTGCAGTGATGCCCACGTGTCGGCAGAGGNTTAGCTGGCGGTGGAGTATTGCCGTGTAACGGCGGATAGGCANGCGGNGNATGNCGGNNGAANACCCANCCCGACCTCGCTGGGCCGGCAACGGTGGCGCGCGAGCGTNATTCCCCTCTTGAGGGCGNTGTCGTGCCGACTCACCTCCTCTAGTGGNGNTGCCGGGCGAAAGCCCANTCAAGGNTCTTCTGACCTNTACGGNCGGAGNNGNCGGATCTTTCGAGTGCTTCTCTCCCTAGAGACGTNGNCTTGGCAGCACCCTTGTCGAAACCTCCCAATCAACTGCTACAAGNTCGTTCTAGAGTNTNTTNCTCTNGANTC] [+] EMBL CA764901 [ACAGGNGGCGNGTGCAGTGATGCCCACGTGTCGGCAGAGGNTTAGCTGGCGGTGGAGTATTGCCGTGTAACGGCGGATAGGCANGCGGNGNATGNCGGNNGAANACCCANCCCGACCTCGCTGGGCCGGCAACGGTGGCGCGCGAGCGTNATTCCCCTCTTGAGGGCGNTGTCGTGCCGACTCACCTCCTCTAGTGGNGNTGCCGGGCGAAAGCCCANTCAAGGNTCTTCTGACCTNTACGGNCGGAGNNGNCGGATCTTTCGAGTGCTTCTCTCCCTAGAGACGTNGNCTTGGCAGCACCCTTGTCGAAACCTCCCAATCAACTGCTACAAGNTCGTTCTAGAGTNTNTTNCTCTNGANTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_319#0 AGCAAGAGCCCCTGCGTCGCTCTCCCCCAGAGGCGACTCGGGTGGCGAACCTAGCCGCCC 60 consensus_319#1 ------------------------------------------------------------ consensus_319#0 CCTCCTCCCCCCGACCACCTTCCTCCTCCGCCTCGCCGCCACCACAAGGACAGCGGCGGC 120 consensus_319#1 ------------------------------------------------------------ consensus_319#0 GGGGCTTCACGCCTCTTCCTACGCTGGCGGCCAAGGGAACCTCCGGTGGGTGGCGATGGC 180 consensus_319#1 ------------------------------------------------------------ consensus_319#0 GACCGCCAGATCCGCCCCGCCGTGGCCGGATCTGGCGGGGTGGCGGCTGACGGCGGGGGT 240 consensus_319#1 ------------------------------------------------------------ consensus_319#0 GGAGACGGCGATGGTAGGGGCGAGGGGGTGTGGGCGACGGTGGTCGGAATGGCGACGATG 300 consensus_319#1 ------------------------------------------------------------ consensus_319#0 GAGGCGGCGGCGGGGATGGCGACGACGGTGGGGTTGGCAACGGCGATGGATTGGCGTCAG 360 consensus_319#1 ------------------------------------------------------------ consensus_319#0 GGTGGCGGATCCGGCAGCGCCGGAGGTGGTTCCGGCGACCGGAGGCGGATCTGGCCCCCC 420 consensus_319#1 ------------------------------------------------------------ consensus_319#0 GGCGGCCAGATCGAGCGAGGACTGTCGCGGCGGCAGTTCGGAGCTTGCGGGACGGCGGCG 480 consensus_319#1 ------------------------------------------------------------ consensus_319#0 CGGACCTCACGGCGATGGCAGCGCGGAGCCCACGGCCCGGGCGGCGGCAGCAAGTGCCCG 540 consensus_319#1 ------------------------------------------------------------ consensus_319#0 ACGGCGGTTGGTGGTTGCAGTACGTCGGCAGCTGGCTGGTGGCGTCGGCAGGTGGCCGAC 600 consensus_319#1 ------------------------------------------------------------ consensus_319#0 GACATCAGTGGCGGGAGTTGCGGCCGGCAGTGGTGGTGACCGGGCAAGGTGGCCGTGGCG 660 consensus_319#1 ------------------------------------------------------------ consensus_319#0 CGAGGAGGCGCGGTACTGGTGGTAGGCCGGCGAGGTTGCCGTTGCGACGCGGTCGATGGA 720 consensus_319#1 ------------------------------------------------------------ consensus_319#0 GGTAGAGGACGACGCTGCGTGAGGTGACAAGGCGTGACCGGTGGCGGCTTGCGGAGACTG 780 consensus_319#1 ------------------------------------------------------------ consensus_319#0 GTCGGCAGGGGGGCGGGTGCAGTGATGCCCACGTGTCGGCAGAGGTTTAGCTGGCGGTGG 840 consensus_319#1 ----ACAGGNGG-CGNGTGCAGTGATGCCCACGTGTCGGCAGAGGNTTAGCTGGCGGTGG 55 **** ** ** ***************************** ************** consensus_319#0 AGTATTGGGGTGTCAACGGTGGATAGGCAGGCGGTGGATGGCGGGTGAAAACCCAGCCCG 900 consensus_319#1 AGTATTGCCGTGT-AACGGCGGATAGGCANGCGGNGNATGNCGGNNGAANACCCANCCCG 114 ******* **** ***** ********* **** * *** *** *** ***** **** consensus_319#0 ACCTCGCTGGGCCGGCAACGGTGGCGCGCGAGCGTCATTCCCCTCTTGAGGGCGTTGTCG 960 consensus_319#1 ACCTCGCTGGGCCGGCAACGGTGGCGCGCGAGCGTNATTCCCCTCTTGAGGGCGNTGTCG 174 *********************************** ****************** ***** consensus_319#0 TGCCGTCTCACCTCCTCTAGTGGTGTTGCCGGGCGAAAGCCCAGTCGAGGTTCTTCTGAC 1020 consensus_319#1 TGCCGACTCACCTCCTCTAGTGGNGNTGCCGGGCGAAAGCCCANTCAAGGNTCTTCTGAC 234 ***** ***************** * ***************** ** *** ********* consensus_319#0 CTCGACGGTCGGCGGCGGCGGTTCTTTCGT-TGCTTCTCTCCCTAGAGACGTTGGCTTGG 1079 consensus_319#1 CTNTACGGNCGGAGNNGNCGGATCTTTCGAGTGCTTCTCTCCCTAGAGACGTNGNCTTGG 294 ** **** *** * * *** ******* ********************* * ***** consensus_319#0 CAGCACCCTTGTCGAAACCTCCCAATCAACTGCTACAAGTTCGTTCTAGAGTCTCTTCCT 1139 consensus_319#1 CAGCACCCTTGTCGAAACCTCCCAATCAACTGCTACAAGNTCGTTCTAGAGTNTNTTNCT 354 *************************************** ************ * ** ** consensus_319#0 CTTGTATCAGCGTCCTAGTTTGTACAAGTTGGCCACGTCGGGGGGCCTAGGGGGGAGAGC 1199 consensus_319#1 CTNGANTC---------------------------------------------------- 362 ** * ** consensus_319#0 GGTTCCATCTTCTCTCTCACCCTCTCTCCCTGAATCCCTGAGATGTGGATAGAGCGGGGT 1259 consensus_319#1 ------------------------------------------------------------ consensus_319#0 TTTGTGTCGGTTGTATAGATTGTTTTGGGCGATCCCAGTTGTAGCTCCTTTGTTGGCCTT 1319 consensus_319#1 ------------------------------------------------------------ consensus_319#0 GCGGTGGGCGGTCACGCTTAGCGGTGGCCGGTCCGGTGCAGGCCTTCTCCTGGGTGAGTG 1379 consensus_319#1 ------------------------------------------------------------ consensus_319#0 CTTGGTGTTGTCGGTGTGTGGGAGGTGGTATACCTTTTCTTTTCATGGTTACGGCCTCCC 1439 consensus_319#1 ------------------------------------------------------------ consensus_319#0 AGGGTTGTATCCTTGTATTTTTTTCTGCTCTATCAATATGAACTTCACACTGTCTTAT 1497 consensus_319#1 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||