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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3190#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1771 fasta sequence
[CCATTGCCTCCCTTGATACTGCCGATACCGCCCACTTGACTGTCTGGAGTACCTCTCCCCAATCTCAGGGCGCAGCGGCTCGTAGGGGCTCGGCGGCAAGCCGTGCCCATACCGCCCACCACCATAGCGTGAGCGGTGATACCCTGGCATTGGTGGCGGCTCAGGGTTCTCAGGGAGCAGCGAGAGCGCTCGTCGGCCCGCCCGACGGTGCTCCCGCGGCGGCTCGACGATCTGGCAGGTCCTCGTGATCTGCTCCCTCAGCTCGTCCAGCTTGCGGAGCAACTCCACTGGGTCCTGCTTCAGCGCGTGCCAGTCGAGCGCCCTCTGCTCGCTGCATTGCGCCCGCTCGTCGAGCCCAATCCTCCGCCTGTACTTCATCTCCTTCAGATCGCTCCCCATGGCGCGCGCCTCCCGGAGAAGACACGCTTCCTACTCCCCCACCACTTGGCGGATCGAGAGGTGACGCTGTGTTCTACACGGATTGAGAGAAATCTGTGAGGCGGTTGGGACGGTGGAGGAACAGATCAGCAGTGGATCCAGAGAAGATGCCAAATGAGGTAAGATCCGCCGGTTCCGCGGGGGGATGGGAGGCGAAGCGGGGATTACCTTCCGACCAGCTCGCTGCGGCGAGGCTACGGCACAGGGGCGTGGCGGCGCCGCCGGCTCGCCATTTAGGGTTTCGTGGGGCGGCTCGAGGATTCCGCCATGGGAGAGAGGAGGAGGAGGAGGGGAACGGCACTCGCAGTGGCAGTGTGCGCGTGGTAACGGAGACGACGAGGGAGCCAACTGAAAGAGCCTTATATATACCCACGAGCCCACGAGGGACCTGTTTGTAATTAGTATATTTTCCGGGGGGGTCGGTCGCGGTGGGGTTTCGTGGGGATGTGGTCCGCTTTTGGAATGATCTGGCTGCGCCGCTGACGTGGGGGGGTCAAAAGGTAGGGCCCACGTGGAAGCGAGCGGCAAAGGTGGGGTACAGCTGGTGAAATGGAATTCGCCGTATCTCTCTTCTTTTCTTTTCTTTACTTTTCCATTTCGTCTTGGGAGAGCCATTATTTAGCATTTTAGCATCAGTCCTGCATAACCCACAGTGATAATTAAATTAGTAGTTAATCAATCACTTATCCATCGTATGAACACTTGAACAGGCTGAAGCTAAGATAATGGTCACAATCTCAACTACTTTCTTAGTTTGGTAGTACCAGCATCAATTCTTTCATTCTTGTGCCAAACATCTCACTGGGAGAAACAATAAAATAAGGCCGGTGATGCTTGTACGTGGGATAGTTGGTTATTTGTGAAGGCGACCTGAAGAATGGCATTTGCCTTTAGCTGGGAGCTTACTACTACTAACATTTTGACAACAGATTTCGTGTAAGCAAAATAGCCAACTGTTTGTGTCTCTCATCAGGCCTTCCAATTAAGTAGGCCTACTTGCAAAGCCGCAACAATGGCGGACATGATTACTGGTATGATTCAGTAGAATCTTAGCGGATTAAACGGCTTGAACTCTAAGGATGCTGCACATGCAGGGCAATGTCGTTCCAATGGCCACTAGACAATTAGTAATTTTAGTACTTGTTAAGCTCTTTAGTATCAGAGAACTAACAGGTTTAATTCCCTGAGCACATGTCTGCAGCTTTAAATTTCCCGTAGGGCCTTTCATAAATCACAATTATGTACTCCTACCCTTGCTTGCTTCTAGAACACACAGTTTTCTTTTCAAGCTGTCATCCTCCTCCTCTCATCAGCTGATATAAACAAGGCATTT]
[+] EMBL AK106945 [CCATTGCCTCCCTTGATACTGCCGATACCGCCCACTTGACTGTCTGGAGTACCTCTCCCCAATCTCAGGGCGCAGCGGCTCGTAGGGGCTCGGCGGCAAGCCGTGCCCATACCGCCCACCACCATAGCGTGAGCGGTGATACCCTGGCATTGGTGGCGGCTCAGGGTTCTCAGGGAGCAGCGAGAGCGCTCGTCGGCCCGCCCGACGGTGCTCCCGCGGCGGCTCGACGATCTGGCAGGTCCTCGTGATCTGCTCCCTCAGCTCGTCCAGCTTGCGGAGCAACTCCACTGGGTCCTGCTTCAGCGCGTGCCAGTCGAGCGCCCTCTGCTCGCTGCATTGCGCCCGCTCGTCGAGCCCAATCCTCCGCCTGTACTTCATCTCCTTCAGATCGCTCCCCATGGCGCGCGCCTCCCGGAGAAGACACGCTTCCTACTCCCCCACCACTTGGCGGATCGAGAGGTGACGCTGTGTTCTACACGGATTGAGAGAAATCTGTGAGGCGGTTGGGACGGTGGAGGAACAGATCAGCAGTGGATCCAGAGAAGATGCCAAATGAGGTAAGATCCGCCGGTTCCGCGGGGGGATGGGAGGCGAAGCGGGGATTACCTTCCGACCAGCTCGCTGCGGCGAGGCTACGGCACAGGGGCGTGGCGGCGCCGCCGGCTCGCCATTTAGGGTTTCGTGGGGCGGCTCGAGGATTCCGCCATGGGAGAGAGGAGGAGGAGGAGGGGAACGGCACTCGCAGTGGCAGTGTGCGCGTGGTAACGGAGACGACGAGGGAGCCAACTGAAAGAGCCTTATATATACCCACGAGCCCACGAGGGACCTGTTTGTAATTAGTATATTTTCCGGGGGGGTCGGTCGCGGTGGGGTTTCGTGGGGATGTGGTCCGCTTTTGGAATGATCTGGCTGCGCCGCTGACGTGGGGGGGTCAAAAGGTAGGGCCCACGTGGAAGCGAGCGGCAAAGGTGGGGTACAGCTGGTGAAATGGAATTCGCCGTATCTCTCTTCTTTTCTTTTCTTTACTTTTCCATTTCGTCTTGGGAGAGCCATTATTTAGCATTTTAGCATCAGTCCTGCATAACCCACAGTGATAATTAAATTAGTAGTTAATCAATCACTTATCCATCGTATGAACACTTGAACAGGCTGAAGCTAAGATAATGGTCACAATCTCAACTACTTTCTTAGTTTGGTAGTACCAGCATCAATTCTTTCATTCTTGTGCCAAACATCTCACTGGGAGAAACAATAAAATAAGGCCGGTGATGCTTGTACGTGGGATAGTTGGTTATTTGTGAAGGCGACCTGAAGAATGGCATTTGCCTTTAGCTGGGAGCTTACTACTACTAACATTTTGACAACAGATTTCGTGTAAGCAAAATAGCCAACTGTTTGTGTCTCTCATCAGGCCTTCCAATTAAGTAGGCCTACTTGCAAAGCCGCAACAATGGCGGACATGATTACTGGTATGATTCAGTAGAATCTTAGCGGATTAAACGGCTTGAACTCTAAGGATGCTGCACATGCAGGGCAATGTCGTTCCAATGGCCACTAGACAATTAGTAATTTTAGTACTTGTTAAGCTCTTTAGTATCAGAGAACTAACAGGTTTAATTCCCTGAGCACATGTCTGCAGCTTTAAATTTCCCGTAGGGCCTTTCATAAATCACAATTATGTACTCCTACCCTTGCTTGCTTCTAGAACACACAGTTTTCTTTTCAAGCTGTCATCCTCCTCCTCTCATCAGCTGATATAAACAAGGCATTT]
consensusID : consensus_3190#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence
[CGCGGCGGCTCGACGATCTGGCAGGTCCTCGTGATCTGCTCCCTCAGCTCGTCCAGCTTGCGGAGCAACTCCACTGGGTCCTGCTTCAGCGCGTGCCAGTCGAGCGCCCTCTGCTCGCTGCATTGCGCCCGCTCGTCGAGCCCAATCCTCCGCCTGTACTTCATCTCCTTCAGATCGCTCCCCATGGCGCGCGCCTCCCGGAGAAGACACGCTTCCTACTCCCCCACCACTTGGCGGATCGAGAGGTGACGCTGTGTTCTACNCGGNTTGAGAGAAATCAAAAAANCAGCTCGCTGCGGCGAGGCTACGGCACAGGGGCGTGGCGGCGCCGCCGGCTCGCCATTTAGGGTTTCGTGGGGCGGCTCGAGGATTCCGCCATGGGAGAGAGGAGGAGGAGGAGGGGAACGGCACTCG]
[-] EMBL AU166284 [CGCGGCGGCTCGACGATCTGGCAGGTCCTCGTGATCTGCTCCCTCAGCTCGTCCAGCTTGCGGAGCAACTCCACTGGGTCCTGCTTCAGCGCGTGCCAGTCGAGCGCCCTCTGCTCGCTGCATTGCGCCCGCTCGTCGAGCCCAATCCTCCGCCTGTACTTCATCTCCTTCAGATCGCTCCCCATGGCGCGCGCCTCCCGGAGAAGACACGCTTCCTACTCCCCCACCACTTGGCGGATCGAGAGGTGACGCTGTGTTCTACNCGGNTTGAGAGAAATCAAAAAANCAGCTCGCTGCGGCGAGGCTACGGCACAGGGGCGTGGCGGCGCCGCCGGCTCGCCATTTAGGGTTTCGTGGGGCGGCTCGAGGATTCCGCCATGGGAGAGAGGAGGAGGAGGAGGGGAACGGCACTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3190#0 CCATTGCCTCCCTTGATACTGCCGATACCGCCCACTTGACTGTCTGGAGTACCTCTCCCC 60
consensus_3190#1 ------------------------------------------------------------
consensus_3190#0 AATCTCAGGGCGCAGCGGCTCGTAGGGGCTCGGCGGCAAGCCGTGCCCATACCGCCCACC 120
consensus_3190#1 ------------------------------------------------------------
consensus_3190#0 ACCATAGCGTGAGCGGTGATACCCTGGCATTGGTGGCGGCTCAGGGTTCTCAGGGAGCAG 180
consensus_3190#1 ------------------------------------------------------------
consensus_3190#0 CGAGAGCGCTCGTCGGCCCGCCCGACGGTGCTCCCGCGGCGGCTCGACGATCTGGCAGGT 240
consensus_3190#1 ----------------------------------CGCGGCGGCTCGACGATCTGGCAGGT 26
**************************
consensus_3190#0 CCTCGTGATCTGCTCCCTCAGCTCGTCCAGCTTGCGGAGCAACTCCACTGGGTCCTGCTT 300
consensus_3190#1 CCTCGTGATCTGCTCCCTCAGCTCGTCCAGCTTGCGGAGCAACTCCACTGGGTCCTGCTT 86
************************************************************
consensus_3190#0 CAGCGCGTGCCAGTCGAGCGCCCTCTGCTCGCTGCATTGCGCCCGCTCGTCGAGCCCAAT 360
consensus_3190#1 CAGCGCGTGCCAGTCGAGCGCCCTCTGCTCGCTGCATTGCGCCCGCTCGTCGAGCCCAAT 146
************************************************************
consensus_3190#0 CCTCCGCCTGTACTTCATCTCCTTCAGATCGCTCCCCATGGCGCGCGCCTCCCGGAGAAG 420
consensus_3190#1 CCTCCGCCTGTACTTCATCTCCTTCAGATCGCTCCCCATGGCGCGCGCCTCCCGGAGAAG 206
************************************************************
consensus_3190#0 ACACGCTTCCTACTCCCCCACCACTTGGCGGATCGAGAGGTGACGCTGTGTTCTACACGG 480
consensus_3190#1 ACACGCTTCCTACTCCCCCACCACTTGGCGGATCGAGAGGTGACGCTGTGTTCTACNCGG 266
******************************************************** ***
consensus_3190#0 ATTGAGAGAAATCTGTGAGGCGGTTGGGACGGTGGAGGAACAGATCAGCAGTGGATCCAG 540
consensus_3190#1 NTTGAGAGAAATC---------------------------------------------AA 281
************ *
consensus_3190#0 AGAAGATGCCAAATGAGGTAAGATCCGCCGGTTCCGCGGGGGGATGGGAGGCGAAGCGGG 600
consensus_3190#1 AAAAN------------------------------------------------------- 286
* **
consensus_3190#0 GATTACCTTCCGACCAGCTCGCTGCGGCGAGGCTACGGCACAGGGGCGTGGCGGCGCCGC 660
consensus_3190#1 --------------CAGCTCGCTGCGGCGAGGCTACGGCACAGGGGCGTGGCGGCGCCGC 332
**********************************************
consensus_3190#0 CGGCTCGCCATTTAGGGTTTCGTGGGGCGGCTCGAGGATTCCGCCATGGGAGAGAGGAGG 720
consensus_3190#1 CGGCTCGCCATTTAGGGTTTCGTGGGGCGGCTCGAGGATTCCGCCATGGGAGAGAGGAGG 392
************************************************************
consensus_3190#0 AGGAGGAGGGGAACGGCACTCGCAGTGGCAGTGTGCGCGTGGTAACGGAGACGACGAGGG 780
consensus_3190#1 AGGAGGAGGGGAACGGCACTCG-------------------------------------- 414
**********************
consensus_3190#0 AGCCAACTGAAAGAGCCTTATATATACCCACGAGCCCACGAGGGACCTGTTTGTAATTAG 840
consensus_3190#1 ------------------------------------------------------------
consensus_3190#0 TATATTTTCCGGGGGGGTCGGTCGCGGTGGGGTTTCGTGGGGATGTGGTCCGCTTTTGGA 900
consensus_3190#1 ------------------------------------------------------------
consensus_3190#0 ATGATCTGGCTGCGCCGCTGACGTGGGGGGGTCAAAAGGTAGGGCCCACGTGGAAGCGAG 960
consensus_3190#1 ------------------------------------------------------------
consensus_3190#0 CGGCAAAGGTGGGGTACAGCTGGTGAAATGGAATTCGCCGTATCTCTCTTCTTTTCTTTT 1020
consensus_3190#1 ------------------------------------------------------------
consensus_3190#0 CTTTACTTTTCCATTTCGTCTTGGGAGAGCCATTATTTAGCATTTTAGCATCAGTCCTGC 1080
consensus_3190#1 ------------------------------------------------------------
consensus_3190#0 ATAACCCACAGTGATAATTAAATTAGTAGTTAATCAATCACTTATCCATCGTATGAACAC 1140
consensus_3190#1 ------------------------------------------------------------
consensus_3190#0 TTGAACAGGCTGAAGCTAAGATAATGGTCACAATCTCAACTACTTTCTTAGTTTGGTAGT 1200
consensus_3190#1 ------------------------------------------------------------
consensus_3190#0 ACCAGCATCAATTCTTTCATTCTTGTGCCAAACATCTCACTGGGAGAAACAATAAAATAA 1260
consensus_3190#1 ------------------------------------------------------------
consensus_3190#0 GGCCGGTGATGCTTGTACGTGGGATAGTTGGTTATTTGTGAAGGCGACCTGAAGAATGGC 1320
consensus_3190#1 ------------------------------------------------------------
consensus_3190#0 ATTTGCCTTTAGCTGGGAGCTTACTACTACTAACATTTTGACAACAGATTTCGTGTAAGC 1380
consensus_3190#1 ------------------------------------------------------------
consensus_3190#0 AAAATAGCCAACTGTTTGTGTCTCTCATCAGGCCTTCCAATTAAGTAGGCCTACTTGCAA 1440
consensus_3190#1 ------------------------------------------------------------
consensus_3190#0 AGCCGCAACAATGGCGGACATGATTACTGGTATGATTCAGTAGAATCTTAGCGGATTAAA 1500
consensus_3190#1 ------------------------------------------------------------
consensus_3190#0 CGGCTTGAACTCTAAGGATGCTGCACATGCAGGGCAATGTCGTTCCAATGGCCACTAGAC 1560
consensus_3190#1 ------------------------------------------------------------
consensus_3190#0 AATTAGTAATTTTAGTACTTGTTAAGCTCTTTAGTATCAGAGAACTAACAGGTTTAATTC 1620
consensus_3190#1 ------------------------------------------------------------
consensus_3190#0 CCTGAGCACATGTCTGCAGCTTTAAATTTCCCGTAGGGCCTTTCATAAATCACAATTATG 1680
consensus_3190#1 ------------------------------------------------------------
consensus_3190#0 TACTCCTACCCTTGCTTGCTTCTAGAACACACAGTTTTCTTTTCAAGCTGTCATCCTCCT 1740
consensus_3190#1 ------------------------------------------------------------
consensus_3190#0 CCTCTCATCAGCTGATATAAACAAGGCATTT 1771
consensus_3190#1 -------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||