cluster # 3195

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Oryza sativa
cluster # 3195 cluster # 3195 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3195#0 length = 1829 sequences # 1

consensus_3195#1 length = 374 sequences # 1

consensusID : consensus_3195#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1829
fasta sequence

                              [ATGGGTGCTCAAGTTCATGGCTGATCTGAGAGAAATGTTCGTGGACCTAAGAAGTAGCTCTATGATCCAGTGTTCATCGATCCTCCATGTGAGATTCGCGTGAGAGTTCATCGTCTTTGCTTGCTCGGATAATCAATCACCAATCCAGCGGGCGGCCGGCCACTGGCTTGTGGTTTGGTTTTGGGGGAGAGATTGAGATTTTGCTTACTTTGAGTGAGATCTAGTTCTTCTTGAGTTCTTCCTCATCAAGAAGAGGAAGCAGCTCGCATGCCCATCTCCCCTCTCCTCGCCCACCTCGCTCCGTCCTCGGTTGCTCCGGCGGCATTTGGTGCCCGTCCGGCGCGGCGGCGCTTCGTTGGTAAATCCGAATTCGCGTCTCCAAGCTCTGCTATCTTTTTGTGCTTTGGGTTGTTCATCTCGTGCAAGGTAGGAGTTGTTAGGGTTAAGCTAGAGAAATGGTTTGCTAGCTAATGATTTTTACTTGTACTTATGATTCAGCATGTTTCTGAACCTTTGGGTTTTATGACTGGAGCAGAGAGTGAAGAGTAATCTGGACTAGTTTTTTTTAAAACTGTGTGCACTTGCCGTGTTGTTCGCTGCAGCCTACAGCATAGTTTCAGCTCAAATGACTTGAATTATACAGTACATAGAAAGATGAAGGAATTGGAACATTTGTTAATCTGTGTTACTCATAATATTGTGGAGCTTCTATTGAATGCATTACAGTAGAAAAAAAAAAGGTCAACTATGATATTTATGTTGCAGGAAAGTGTCTGATGTTTTTATAGTTTGAAACTGCTGCTAGCTGAAAGGAAAACAGGCATGGGCAATAGAAGTTTTGACTTGAGTTGTTCTTTGAGAAAAGAGGAGGAAAATGGCACAAATTTGTCGCCATTTGTCCGCAAACTTTTTAAAGAGTGGGATGACCGCAAGGCAAGGGGTTTGTTTCACCATGACATCAGTTCCTGCGAGACAAAGGTACTACCTGGTGAACACAATTTTGTGGCGACATTAATAGAAGGACGTGACCAGAAGAAGCGGCCTACTCAATTTGGAATGAACCAAGTCCTGCAGCCTTTTGATAGCGTGAAATTCAATTTCACTAAAGTTAGCCCAGAGGAAGTGATCTTCACATTCAAAGAATCTCAGAATGACTCTGTAAAGTACTTCGACAATGTTCCTCATGCTGTTGCAGCTTCTCCTACTGCCATTTTGATCAATGTTAGTGAGTGCTACACCCCTCTAACAGTTATGCCTAAATCCTAATCCAATATGGTGCACACATGATCTGTTTTTGCCATTGTTTGTTTGATAGGTGAGTCCAATTGGCTACTGCCATGTGCTTCTGATCCCTCGAATCCAGGATTGCTTACCGCAAAGGGTTGATAAAGAGAGCTTCCTACTTGCCATGTATGTTGCAAGTGAAGCAAAGGATCCATTCTTCAGAGTTGGTTACAACAGTCTGGGTGGTTTCGCAACTATCAATCATCTCCACTTCCAGGCGTACTATCTGAAAGTGCAATATCCAGTCGAGAAGGCACTGACGGAGAAGCTTACGACTCTGGGGAATGGTGTCAGCATTATTCAGCTGGTTCAGTATCCAGTTAGTGGTTTTGTATTTGAAGGAGGGGCATGCCTGGAGGATTTGTCCGATGTTGTTTCAAAAGTCTGCATCTTCTTGCAAGAGAATAATAAACCTTTCAATGCCCTCATCTCTGAATCTGGCAAGAGAGTGTTCCTGCTACCACAGTGCTACGCCGAGAAGCAGGCCCTCGGGAGAGTGAGCCAAGAATTCCTCGACATGAGAATAAACCCAGCAGTCTGGGAGC]

[+] EMBL AK100274             [ATGGGTGCTCAAGTTCATGGCTGATCTGAGAGAAATGTTCGTGGACCTAAGAAGTAGCTCTATGATCCAGTGTTCATCGATCCTCCATGTGAGATTCGCGTGAGAGTTCATCGTCTTTGCTTGCTCGGATAATCAATCACCAATCCAGCGGGCGGCCGGCCACTGGCTTGTGGTTTGGTTTTGGGGGAGAGATTGAGATTTTGCTTACTTTGAGTGAGATCTAGTTCTTCTTGAGTTCTTCCTCATCAAGAAGAGGAAGCAGCTCGCATGCCCATCTCCCCTCTCCTCGCCCACCTCGCTCCGTCCTCGGTTGCTCCGGCGGCATTTGGTGCCCGTCCGGCGCGGCGGCGCTTCGTTGGTAAATCCGAATTCGCGTCTCCAAGCTCTGCTATCTTTTTGTGCTTTGGGTTGTTCATCTCGTGCAAGGTAGGAGTTGTTAGGGTTAAGCTAGAGAAATGGTTTGCTAGCTAATGATTTTTACTTGTACTTATGATTCAGCATGTTTCTGAACCTTTGGGTTTTATGACTGGAGCAGAGAGTGAAGAGTAATCTGGACTAGTTTTTTTTAAAACTGTGTGCACTTGCCGTGTTGTTCGCTGCAGCCTACAGCATAGTTTCAGCTCAAATGACTTGAATTATACAGTACATAGAAAGATGAAGGAATTGGAACATTTGTTAATCTGTGTTACTCATAATATTGTGGAGCTTCTATTGAATGCATTACAGTAGAAAAAAAAAAGGTCAACTATGATATTTATGTTGCAGGAAAGTGTCTGATGTTTTTATAGTTTGAAACTGCTGCTAGCTGAAAGGAAAACAGGCATGGGCAATAGAAGTTTTGACTTGAGTTGTTCTTTGAGAAAAGAGGAGGAAAATGGCACAAATTTGTCGCCATTTGTCCGCAAACTTTTTAAAGAGTGGGATGACCGCAAGGCAAGGGGTTTGTTTCACCATGACATCAGTTCCTGCGAGACAAAGGTACTACCTGGTGAACACAATTTTGTGGCGACATTAATAGAAGGACGTGACCAGAAGAAGCGGCCTACTCAATTTGGAATGAACCAAGTCCTGCAGCCTTTTGATAGCGTGAAATTCAATTTCACTAAAGTTAGCCCAGAGGAAGTGATCTTCACATTCAAAGAATCTCAGAATGACTCTGTAAAGTACTTCGACAATGTTCCTCATGCTGTTGCAGCTTCTCCTACTGCCATTTTGATCAATGTTAGTGAGTGCTACACCCCTCTAACAGTTATGCCTAAATCCTAATCCAATATGGTGCACACATGATCTGTTTTTGCCATTGTTTGTTTGATAGGTGAGTCCAATTGGCTACTGCCATGTGCTTCTGATCCCTCGAATCCAGGATTGCTTACCGCAAAGGGTTGATAAAGAGAGCTTCCTACTTGCCATGTATGTTGCAAGTGAAGCAAAGGATCCATTCTTCAGAGTTGGTTACAACAGTCTGGGTGGTTTCGCAACTATCAATCATCTCCACTTCCAGGCGTACTATCTGAAAGTGCAATATCCAGTCGAGAAGGCACTGACGGAGAAGCTTACGACTCTGGGGAATGGTGTCAGCATTATTCAGCTGGTTCAGTATCCAGTTAGTGGTTTTGTATTTGAAGGAGGGGCATGCCTGGAGGATTTGTCCGATGTTGTTTCAAAAGTCTGCATCTTCTTGCAAGAGAATAATAAACCTTTCAATGCCCTCATCTCTGAATCTGGCAAGAGAGTGTTCCTGCTACCACAGTGCTACGCCGAGAAGCAGGCCCTCGGGAGAGTGAGCCAAGAATTCCTCGACATGAGAATAAACCCAGCAGTCTGGGAGC]




>consensus_3195#0
ATGGGTGCTCAAGTTCATGGCTGATCTGAGAGAAATGTTCGTGGACCTAAGAAGTAGCTC
TATGATCCAGTGTTCATCGATCCTCCATGTGAGATTCGCGTGAGAGTTCATCGTCTTTGC
TTGCTCGGATAATCAATCACCAATCCAGCGGGCGGCCGGCCACTGGCTTGTGGTTTGGTT
TTGGGGGAGAGATTGAGATTTTGCTTACTTTGAGTGAGATCTAGTTCTTCTTGAGTTCTT
CCTCATCAAGAAGAGGAAGCAGCTCGCATGCCCATCTCCCCTCTCCTCGCCCACCTCGCT
CCGTCCTCGGTTGCTCCGGCGGCATTTGGTGCCCGTCCGGCGCGGCGGCGCTTCGTTGGT
AAATCCGAATTCGCGTCTCCAAGCTCTGCTATCTTTTTGTGCTTTGGGTTGTTCATCTCG
TGCAAGGTAGGAGTTGTTAGGGTTAAGCTAGAGAAATGGTTTGCTAGCTAATGATTTTTA
CTTGTACTTATGATTCAGCATGTTTCTGAACCTTTGGGTTTTATGACTGGAGCAGAGAGT
GAAGAGTAATCTGGACTAGTTTTTTTTAAAACTGTGTGCACTTGCCGTGTTGTTCGCTGC
AGCCTACAGCATAGTTTCAGCTCAAATGACTTGAATTATACAGTACATAGAAAGATGAAG
GAATTGGAACATTTGTTAATCTGTGTTACTCATAATATTGTGGAGCTTCTATTGAATGCA
TTACAGTAGAAAAAAAAAAGGTCAACTATGATATTTATGTTGCAGGAAAGTGTCTGATGT
TTTTATAGTTTGAAACTGCTGCTAGCTGAAAGGAAAACAGGCATGGGCAATAGAAGTTTT
GACTTGAGTTGTTCTTTGAGAAAAGAGGAGGAAAATGGCACAAATTTGTCGCCATTTGTC
CGCAAACTTTTTAAAGAGTGGGATGACCGCAAGGCAAGGGGTTTGTTTCACCATGACATC
AGTTCCTGCGAGACAAAGGTACTACCTGGTGAACACAATTTTGTGGCGACATTAATAGAA
GGACGTGACCAGAAGAAGCGGCCTACTCAATTTGGAATGAACCAAGTCCTGCAGCCTTTT
GATAGCGTGAAATTCAATTTCACTAAAGTTAGCCCAGAGGAAGTGATCTTCACATTCAAA
GAATCTCAGAATGACTCTGTAAAGTACTTCGACAATGTTCCTCATGCTGTTGCAGCTTCT
CCTACTGCCATTTTGATCAATGTTAGTGAGTGCTACACCCCTCTAACAGTTATGCCTAAA
TCCTAATCCAATATGGTGCACACATGATCTGTTTTTGCCATTGTTTGTTTGATAGGTGAG
TCCAATTGGCTACTGCCATGTGCTTCTGATCCCTCGAATCCAGGATTGCTTACCGCAAAG
GGTTGATAAAGAGAGCTTCCTACTTGCCATGTATGTTGCAAGTGAAGCAAAGGATCCATT
CTTCAGAGTTGGTTACAACAGTCTGGGTGGTTTCGCAACTATCAATCATCTCCACTTCCA
GGCGTACTATCTGAAAGTGCAATATCCAGTCGAGAAGGCACTGACGGAGAAGCTTACGAC
TCTGGGGAATGGTGTCAGCATTATTCAGCTGGTTCAGTATCCAGTTAGTGGTTTTGTATT
TGAAGGAGGGGCATGCCTGGAGGATTTGTCCGATGTTGTTTCAAAAGTCTGCATCTTCTT
GCAAGAGAATAATAAACCTTTCAATGCCCTCATCTCTGAATCTGGCAAGAGAGTGTTCCT
GCTACCACAGTGCTACGCCGAGAAGCAGGCCCTCGGGAGAGTGAGCCAAGAATTCCTCGA
CATGAGAATAAACCCAGCAGTCTGGGAGC

consensusID : consensus_3195#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 374
fasta sequence

                              [TTCATCGTCTTTGCTTGCTCGGATAATCAATCACCAATCCAGCGGGCGGCCGGCCACTGGCTTGTGGTTTGGTTTTGGGGGAGAGATTGAGATTTTGCTTACTTTGAGTGAGATCTAGTTCTTCTTGAGTTCTTCCTCATCAAGAAGAGGAAGCAGCTCGCATGCCCATCTCCCCTCTCCTCGCCCACCTCGCTCCGTCCTCGGTTGCTCCGGCGGCATTTGGTGCCCGTCCGGCGCGGCGGCGCTTCGTTGGAAAGTGTCTGATGTTTTTATAGTTTGAAACTGCTGCTAGCTGAAAGGAAAACAGGCATGGGCAATAGAAGTTTTGACTTGAGTTGTTCTTTGAGAAAAGAGGAGGAAAATGGCACAAATTT]

[+] EMBL AU069750             [TTCATCGTCTTTGCTTGCTCGGATAATCAATCACCAATCCAGCGGGCGGCCGGCCACTGGCTTGTGGTTTGGTTTTGGGGGAGAGATTGAGATTTTGCTTACTTTGAGTGAGATCTAGTTCTTCTTGAGTTCTTCCTCATCAAGAAGAGGAAGCAGCTCGCATGCCCATCTCCCCTCTCCTCGCCCACCTCGCTCCGTCCTCGGTTGCTCCGGCGGCATTTGGTGCCCGTCCGGCGCGGCGGCGCTTCGTTGGAAAGTGTCTGATGTTTTTATAGTTTGAAACTGCTGCTAGCTGAAAGGAAAACAGGCATGGGCAATAGAAGTTTTGACTTGAGTTGTTCTTTGAGAAAAGAGGAGGAAAATGGCACAAATTT]




>consensus_3195#1
TTCATCGTCTTTGCTTGCTCGGATAATCAATCACCAATCCAGCGGGCGGCCGGCCACTGG
CTTGTGGTTTGGTTTTGGGGGAGAGATTGAGATTTTGCTTACTTTGAGTGAGATCTAGTT
CTTCTTGAGTTCTTCCTCATCAAGAAGAGGAAGCAGCTCGCATGCCCATCTCCCCTCTCC
TCGCCCACCTCGCTCCGTCCTCGGTTGCTCCGGCGGCATTTGGTGCCCGTCCGGCGCGGC
GGCGCTTCGTTGGAAAGTGTCTGATGTTTTTATAGTTTGAAACTGCTGCTAGCTGAAAGG
AAAACAGGCATGGGCAATAGAAGTTTTGACTTGAGTTGTTCTTTGAGAAAAGAGGAGGAA
AATGGCACAAATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3195#0      ATGGGTGCTCAAGTTCATGGCTGATCTGAGAGAAATGTTCGTGGACCTAAGAAGTAGCTC 60
consensus_3195#1      ------------------------------------------------------------
                                                                                  

consensus_3195#0      TATGATCCAGTGTTCATCGATCCTCCATGTGAGATTCGCGTGAGAGTTCATCGTCTTTGC 120
consensus_3195#1      ----------------------------------------------TTCATCGTCTTTGC 14
                                                                    **************

consensus_3195#0      TTGCTCGGATAATCAATCACCAATCCAGCGGGCGGCCGGCCACTGGCTTGTGGTTTGGTT 180
consensus_3195#1      TTGCTCGGATAATCAATCACCAATCCAGCGGGCGGCCGGCCACTGGCTTGTGGTTTGGTT 74
                      ************************************************************

consensus_3195#0      TTGGGGGAGAGATTGAGATTTTGCTTACTTTGAGTGAGATCTAGTTCTTCTTGAGTTCTT 240
consensus_3195#1      TTGGGGGAGAGATTGAGATTTTGCTTACTTTGAGTGAGATCTAGTTCTTCTTGAGTTCTT 134
                      ************************************************************

consensus_3195#0      CCTCATCAAGAAGAGGAAGCAGCTCGCATGCCCATCTCCCCTCTCCTCGCCCACCTCGCT 300
consensus_3195#1      CCTCATCAAGAAGAGGAAGCAGCTCGCATGCCCATCTCCCCTCTCCTCGCCCACCTCGCT 194
                      ************************************************************

consensus_3195#0      CCGTCCTCGGTTGCTCCGGCGGCATTTGGTGCCCGTCCGGCGCGGCGGCGCTTCGTTGGT 360
consensus_3195#1      CCGTCCTCGGTTGCTCCGGCGGCATTTGGTGCCCGTCCGGCGCGGCGGCGCTTCGTTGGA 254
                      *********************************************************** 

consensus_3195#0      AAATCCGAATTCGCGTCTCCAAGCTCTGCTATCTTTTTGTGCTTTGGGTTGTTCAT-CTC 419
consensus_3195#1      AAGTGT---CTGATGTTTTTATAGTTTGAAACTGCTGCTAGCTGAAAGGAAAACAGGCAT 311
                      ** *      *   ** *  *   * **  *    *    ***    *     **  *  

consensus_3195#0      GTGCAAGGTAGGAGTTG-TTAGGGTTAAGCTA-GAGAAATGGTTTGCTAGCTAATGATTT 477
consensus_3195#1      GGGCAATAGAAGTTTTGACTTGAGTTGTTCTTTGAGAAAAGA---GGAGGAAAATGGCAC 368
                      * ****   * *  ***  * * ***   **  ****** *    *   *  ****    

consensus_3195#0      TTACTTGTACTTATGATTCAGCATGTTTCTGAACCTTTGGGTTTTATGACTGGAGCAGAG 537
consensus_3195#1      AAATTT------------------------------------------------------ 374
                        * **                                                      

consensus_3195#0      AGTGAAGAGTAATCTGGACTAGTTTTTTTTAAAACTGTGTGCACTTGCCGTGTTGTTCGC 597
consensus_3195#1      ------------------------------------------------------------
                                                                                  

consensus_3195#0      TGCAGCCTACAGCATAGTTTCAGCTCAAATGACTTGAATTATACAGTACATAGAAAGATG 657
consensus_3195#1      ------------------------------------------------------------
                                                                                  

consensus_3195#0      AAGGAATTGGAACATTTGTTAATCTGTGTTACTCATAATATTGTGGAGCTTCTATTGAAT 717
consensus_3195#1      ------------------------------------------------------------
                                                                                  

consensus_3195#0      GCATTACAGTAGAAAAAAAAAAGGTCAACTATGATATTTATGTTGCAGGAAAGTGTCTGA 777
consensus_3195#1      ------------------------------------------------------------
                                                                                  

consensus_3195#0      TGTTTTTATAGTTTGAAACTGCTGCTAGCTGAAAGGAAAACAGGCATGGGCAATAGAAGT 837
consensus_3195#1      ------------------------------------------------------------
                                                                                  

consensus_3195#0      TTTGACTTGAGTTGTTCTTTGAGAAAAGAGGAGGAAAATGGCACAAATTTGTCGCCATTT 897
consensus_3195#1      ------------------------------------------------------------
                                                                                  

consensus_3195#0      GTCCGCAAACTTTTTAAAGAGTGGGATGACCGCAAGGCAAGGGGTTTGTTTCACCATGAC 957
consensus_3195#1      ------------------------------------------------------------
                                                                                  

consensus_3195#0      ATCAGTTCCTGCGAGACAAAGGTACTACCTGGTGAACACAATTTTGTGGCGACATTAATA 1017
consensus_3195#1      ------------------------------------------------------------
                                                                                  

consensus_3195#0      GAAGGACGTGACCAGAAGAAGCGGCCTACTCAATTTGGAATGAACCAAGTCCTGCAGCCT 1077
consensus_3195#1      ------------------------------------------------------------
                                                                                  

consensus_3195#0      TTTGATAGCGTGAAATTCAATTTCACTAAAGTTAGCCCAGAGGAAGTGATCTTCACATTC 1137
consensus_3195#1      ------------------------------------------------------------
                                                                                  

consensus_3195#0      AAAGAATCTCAGAATGACTCTGTAAAGTACTTCGACAATGTTCCTCATGCTGTTGCAGCT 1197
consensus_3195#1      ------------------------------------------------------------
                                                                                  

consensus_3195#0      TCTCCTACTGCCATTTTGATCAATGTTAGTGAGTGCTACACCCCTCTAACAGTTATGCCT 1257
consensus_3195#1      ------------------------------------------------------------
                                                                                  

consensus_3195#0      AAATCCTAATCCAATATGGTGCACACATGATCTGTTTTTGCCATTGTTTGTTTGATAGGT 1317
consensus_3195#1      ------------------------------------------------------------
                                                                                  

consensus_3195#0      GAGTCCAATTGGCTACTGCCATGTGCTTCTGATCCCTCGAATCCAGGATTGCTTACCGCA 1377
consensus_3195#1      ------------------------------------------------------------
                                                                                  

consensus_3195#0      AAGGGTTGATAAAGAGAGCTTCCTACTTGCCATGTATGTTGCAAGTGAAGCAAAGGATCC 1437
consensus_3195#1      ------------------------------------------------------------
                                                                                  

consensus_3195#0      ATTCTTCAGAGTTGGTTACAACAGTCTGGGTGGTTTCGCAACTATCAATCATCTCCACTT 1497
consensus_3195#1      ------------------------------------------------------------
                                                                                  

consensus_3195#0      CCAGGCGTACTATCTGAAAGTGCAATATCCAGTCGAGAAGGCACTGACGGAGAAGCTTAC 1557
consensus_3195#1      ------------------------------------------------------------
                                                                                  

consensus_3195#0      GACTCTGGGGAATGGTGTCAGCATTATTCAGCTGGTTCAGTATCCAGTTAGTGGTTTTGT 1617
consensus_3195#1      ------------------------------------------------------------
                                                                                  

consensus_3195#0      ATTTGAAGGAGGGGCATGCCTGGAGGATTTGTCCGATGTTGTTTCAAAAGTCTGCATCTT 1677
consensus_3195#1      ------------------------------------------------------------
                                                                                  

consensus_3195#0      CTTGCAAGAGAATAATAAACCTTTCAATGCCCTCATCTCTGAATCTGGCAAGAGAGTGTT 1737
consensus_3195#1      ------------------------------------------------------------
                                                                                  

consensus_3195#0      CCTGCTACCACAGTGCTACGCCGAGAAGCAGGCCCTCGGGAGAGTGAGCCAAGAATTCCT 1797
consensus_3195#1      ------------------------------------------------------------
                                                                                  

consensus_3195#0      CGACATGAGAATAAACCCAGCAGTCTGGGAGC 1829
consensus_3195#1      --------------------------------