These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3197#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence [AAAAAACGCGCAATCCCGGCGGCCATGACGCCGCTCGCCCGCCGCCTGCTGCACGCGAGCTCACCCGCCGCCGCCGGAGGCGAGCCGGGGGTGCTGGCCTGCCGCCTCGCCTCCCGCGCGGTGGTCCGCTTCGCGGGGCCAGAGGCGGGCCGCTTCCTCCGCTCGCTCCTCACCAACGACCTCCTCCTCTCGTCGTCGTCGCAGCAGAGGTACGCGCCCACGCCCAACGCGCCCGCGCGGGCGCCGCCGCCGGCGTACGCGGCGCTGCTGACGCCGCAGGGGAGGTTCCTCTACGACCTCTTCCTCTACCGCCCGCCCCCACCGTCGCAGCTGCTCGACCGCACGGGCTCCGCGCCGCTGACCGGGGAGAGGCCCAAGGGGAACCAGGAGGATGAGGGGGAGGACGAGCCCGGC] [+] EMBL AU166339 [AAAAAACGCGCAATCCCGGCGGCCATGACGCCGCTCGCCCGCCGCCTGCTGCACGCGAGCTCACCCGCCGCCGCCGGAGGCGAGCCGGGGGTGCTGGCCTGCCGCCTCGCCTCCCGCGCGGTGGTCCGCTTCGCGGGGCCAGAGGCGGGCCGCTTCCTCCGCTCGCTCCTCACCAACGACCTCCTCCTCTCGTCGTCGTCGCAGCAGAGGTACGCGCCCACGCCCAACGCGCCCGCGCGGGCGCCGCCGCCGGCGTACGCGGCGCTGCTGACGCCGCAGGGGAGGTTCCTCTACGACCTCTTCCTCTACCGCCCGCCCCCACCGTCGCAGCTGCTCGACCGCACGGGCTCCGCGCCGCTGACCGGGGAGAGGCCCAAGGGGAACCAGGAGGATGAGGGGGAGGACGAGCCCGGC] consensusID : consensus_3197#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 398 fasta sequence [GCAAAAAACGCGCAATCCCGGCGGCCATGACGCGCTCGCCCGCCGCCTGCTGCACGCGAGCTCACCCGCCGCCGCCGGAGAGNCCTGGGGGTGCTGGCCTGCCGCCTCGCCTCCCGCGCGGTGGTCCGCTTCGGTGTGCCAGAGGCGGGCCGCTTCCTCCGNTCGCTCCTCACCAACGACCTCCTCCTCTCGTCGTCGTCGCAGCAGAGGTACGCGNCCACGGCCAACGCGCCCGCGCGGGCGCTGNCGCCGGGTAACGCGGCGCTGCTGACGNCGCAGGGAGGTTCCTCTACGACCTCTTCCTCTACCGGCCGCCCCAACGTCGNAGTTGCTCGACCGAATGGCTNCGGGCCGTTGACCGNGGAGAGGCCCAAGGGGAAACAGGAGGGATTAGGGGG] [+] EMBL C28438 [GCAAAAAACGCGCAATCCCGGCGGCCATGACGCGCTCGCCCGCCGCCTGCTGCACGCGAGCTCACCCGCCGCCGCCGGAGAGNCCTGGGGGTGCTGGCCTGCCGCCTCGCCTCCCGCGCGGTGGTCCGCTTCGGTGTGCCAGAGGCGGGCCGCTTCCTCCGNTCGCTCCTCACCAACGACCTCCTCCTCTCGTCGTCGTCGCAGCAGAGGTACGCGNCCACGGCCAACGCGCCCGCGCGGGCGCTGNCGCCGGGTAACGCGGCGCTGCTGACGNCGCAGGGAGGTTCCTCTACGACCTCTTCCTCTACCGGCCGCCCCAACGTCGNAGTTGCTCGACCGAATGGCTNCGGGCCGTTGACCGNGGAGAGGCCCAAGGGGAAACAGGAGGGATTAGGGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3197#0 --AAAAAACGCGCAATCCCGGCGGCCATGACGCCGCTCGCCCGCCGCCTGCTGCACGCGA 58 consensus_3197#1 GCAAAAAACGCGCAATCCCGGCGGCCATGACGC-GCTCGCCCGCCGCCTGCTGCACGCGA 59 ******************************* ************************** consensus_3197#0 GCTCACCCGCCGCCGCCGGAGGCGAGCCGGGGGTGCTGGCCTGCCGCCTCGCCTCCCGCG 118 consensus_3197#1 GCTCACCCGCCGCCGCCGGAGA-GNCCTGGGGGTGCTGGCCTGCCGCCTCGCCTCCCGCG 118 ********************* * * ******************************** consensus_3197#0 CGGTGGTCCGCTTCGCGGGGCCAGAGGCGGGCCGCTTCCTCCGCTCGCTCCTCACCAACG 178 consensus_3197#1 CGGTGGTCCGCTTCGGTGTGCCAGAGGCGGGCCGCTTCCTCCGNTCGCTCCTCACCAACG 178 *************** * ************************ **************** consensus_3197#0 ACCTCCTCCTCTCGTCGTCGTCGCAGCAGAGGTACGCGCCCACGCCCAACGCGCCCGCGC 238 consensus_3197#1 ACCTCCTCCTCTCGTCGTCGTCGCAGCAGAGGTACGCGNCCACGGCCAACGCGCCCGCGC 238 ************************************** ***** *************** consensus_3197#0 GGGCGCCGCCGCCGGCGTACGCGGCGCTGCTGACGCCGCAGGGGAGGTTCCTCTACGACC 298 consensus_3197#1 GGGCGCTGNCGCCGGGTAACGCGGCGCTGCTGACGNCGCAGGG-AGGTTCCTCTACGACC 297 ****** * ****** ***************** ******* **************** consensus_3197#0 TCTTCCTCTACCGCCCGCCCCCACCGTCGCAGCTGCTCGACCGCACGGGCTCCGCGCCGC 358 consensus_3197#1 TCTTCCTCTACCGGCCGCCCCAAC-GTCGNAGTTGCTCGACCGAATGG-CTNCGGGCCGT 355 ************* ******* ** **** ** ********** * ** ** ** **** consensus_3197#0 TGACCGGGGAGAGGCCCAAGGGGAACCAGGAGG-ATGAGGGGGAGGACGAGCCCGGC 414 consensus_3197#1 TGACCGNGGAGAGGCCCAAGGGGAAACAGGAGGGATTAGGGGG-------------- 398 ****** ****************** ******* ** ****** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||