These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3205#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence [TTTTAAGGTTTTTTAAGCTTTATATCATCGTTTTCTGGCCTTTAAAAGCAAACTTGTGAAACAAAAAAAACATCAACTAACTTAATCATCACTCCCCCTACCATTCTTCTCTCAAAAAAAAGGGGAAAAAAAAACAAACGAACGAACAAGCAATCACTCACTAAAATATGTAGTCCTATCTCTCACCATTAATCTGTATATAATTGTACACTTAATCTGAGCTCGCTCAGAGGATGAAAGAACTCAATTATCCGCCGGAGAGGCAGCTGACGACGATGAATCCGATGATCTAAAAATTCTCCTTGGGGAAGACGAATTTGGTGGGGGTCTTGTGGGAAAAGTCCTGGGCGAGGCGGCGGAGCTCCGGGGTGAACGCCTGGTCGCCGCAAAAAAAGACGCCGACGCGCTGCCCCTGGTGGTTCACGGGGACGCGCTTGAACACGTCGCGCCAGCTCGGGCGCGCGAAGTGGGTGCGCACCCGCGTCCCGGACACCACGTCCACGCCGTTCTTGGCGTGGTGGAGCGCCTGGAGCATCGTCACCAGCGCCGACCGCGCGTCCCCCTCCTCGTACACGCTGGTGCAGTGGTTGTGGAGCTCGATCAACTCGCGCCCGGGGTCGCGGTCGGCCACCTCGTTCATCACGCCGCGGAACCACTCGAACGAGC] [+] EMBL CB653675 [TTTTAAGGTTTTTTAAGCTTTATATCATCGTTTTCTGGCCTTTAAAAGCAAACTTGTGAAACAAAAAAAACATCAACTAACTTAATCATCACTCCCCCTACCATTCTTCTCTCAAAAAAAAGGGGAAAAAAAAACAAACGAACGAACAAGCAATCACTCACTAAAATATGTAGTCCTATCTCTCACCATTAATCTGTATATAATTGTACACTTAATCTGAGCTCGCTCAGAGGATGAAAGAACTCAATTATCCGCCGGAGAGGCAGCTGACGACGATGAATCCGATGATCTAAAAATTCTCCTTGGGGAAGACGAATTTGGTGGGGGTCTTGTGGGAAAAGTCCTGGGCGAGGCGGCGGAGCTCCGGGGTGAACGCCTGGTCGCCGCAAAAAAAGACGCCGACGCGCTGCCCCTGGTGGTTCACGGGGACGCGCTTGAACACGTCGCGCCAGCTCGGGCGCGCGAAGTGGGTGCGCACCCGCGTCCCGGACACCACGTCCACGCCGTTCTTGGCGTGGTGGAGCGCCTGGAGCATCGTCACCAGCGCCGACCGCGCGTCCCCCTCCTCGTACACGCTGGTGCAGTGGTTGTGGAGCTCGATCAACTCGCGCCCGGGGTCGCGGTCGGCCACCTCGTTCATCACGCCGCGGAACCACTCGAACGAGC] consensusID : consensus_3205#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [AAAAAAGCACTTTGTGGTAAGCTTTATATCATCGTTTTCTGGTAATTTTGTACAAACTTGTGAAACAAAAAAAAACATCAACTAACTTAATCATCACTCCCCCTACCATTCTTCTACCTACACAGAAGGAAAAAAAAACAAACGAACGAACAACCAATCACTCACTAAAATATGTAGTCCTATCTCTCACCATTAATCTGTATATAATTGTACACTTAATCTGAGCTCGCTCAGAAGATGAACAACTCAATTATCCGCCGGAGAGGCAGCTGATGAATCCGAACCCGAATCCGACGATCTAGAAATTCTCCTTGTGGAAGACGAACTTGGTGGTGGTCTTGTGGGAGAAGTCCTGGGCGAGGCGGCGGAGCTCCGGCGTGAGCGCCTGGTCGCCGCAGAAGAAGACGCCG] [-] EMBL CA765988 [AAAAAAGCACTTTGTGGTAAGCTTTATATCATCGTTTTCTGGTAATTTTGTACAAACTTGTGAAACAAAAAAAAACATCAACTAACTTAATCATCACTCCCCCTACCATTCTTCTACCTACACAGAAGGAAAAAAAAACAAACGAACGAACAACCAATCACTCACTAAAATATGTAGTCCTATCTCTCACCATTAATCTGTATATAATTGTACACTTAATCTGAGCTCGCTCAGAAGATGAACAACTCAATTATCCGCCGGAGAGGCAGCTGATGAATCCGAACCCGAATCCGACGATCTAGAAATTCTCCTTGTGGAAGACGAACTTGGTGGTGGTCTTGTGGGAGAAGTCCTGGGCGAGGCGGCGGAGCTCCGGCGTGAGCGCCTGGTCGCCGCAGAAGAAGACGCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3205#0 TTTTAAGGTTTTT----TAAGCTTTATATCATCGTTTTCTGGCCTTTAAAAGCAAACTTG 56 consensus_3205#1 AAAAAAGCACTTTGTGGTAAGCTTTATATCATCGTTTTCTGGTAATTTTGTACAAACTTG 60 *** *** ************************* ** ******** consensus_3205#0 TGAAACAAAAAAAA-CATCAACTAACTTAATCATCACTCCCCCTACCATTCTTCTCTCAA 115 consensus_3205#1 TGAAACAAAAAAAAACATCAACTAACTTAATCATCACTCCCCCTACCATTCTTCTACCTA 120 ************** **************************************** * * consensus_3205#0 AAAAAAGGGGAAAAAAAAACAAACGAACGAACAAGCAATCACTCACTAAAATATGTAGTC 175 consensus_3205#1 CACAGAAGG-AAAAAAAAACAAACGAACGAACAACCAATCACTCACTAAAATATGTAGTC 179 * * * ** ************************ ************************* consensus_3205#0 CTATCTCTCACCATTAATCTGTATATAATTGTACACTTAATCTGAGCTCGCTCAGAGGAT 235 consensus_3205#1 CTATCTCTCACCATTAATCTGTATATAATTGTACACTTAATCTGAGCTCGCTCAGAAGAT 239 ******************************************************** *** consensus_3205#0 GAAAGAACTCAATTATCCGCCGGAGAGGCAGCTGACGA---CGA---TGAATCCGATGAT 289 consensus_3205#1 GAAC-AACTCAATTATCCGCCGGAGAGGCAGCTGATGAATCCGAACCCGAATCCGACGAT 298 *** ****************************** ** *** ******** *** consensus_3205#0 CTAAAAATTCTCCTTGGGGAAGACGAATTTGGTGGGGGTCTTGTGGGAAAAGTCCTGGGC 349 consensus_3205#1 CTAGAAATTCTCCTTGTGGAAGACGAACTTGGTGGTGGTCTTGTGGGAGAAGTCCTGGGC 358 *** ************ ********** ******* ************ *********** consensus_3205#0 GAGGCGGCGGAGCTCCGGGGTGAACGCCTGGTCGCCGCAAAAAAAGACGCCGACGCGCTG 409 consensus_3205#1 GAGGCGGCGGAGCTCCGGCGTGAGCGCCTGGTCGCCGCAGAAGAAGACGCCG-------- 410 ****************** **** *************** ** ********* consensus_3205#0 CCCCTGGTGGTTCACGGGGACGCGCTTGAACACGTCGCGCCAGCTCGGGCGCGCGAAGTG 469 consensus_3205#1 ------------------------------------------------------------ consensus_3205#0 GGTGCGCACCCGCGTCCCGGACACCACGTCCACGCCGTTCTTGGCGTGGTGGAGCGCCTG 529 consensus_3205#1 ------------------------------------------------------------ consensus_3205#0 GAGCATCGTCACCAGCGCCGACCGCGCGTCCCCCTCCTCGTACACGCTGGTGCAGTGGTT 589 consensus_3205#1 ------------------------------------------------------------ consensus_3205#0 GTGGAGCTCGATCAACTCGCGCCCGGGGTCGCGGTCGGCCACCTCGTTCATCACGCCGCG 649 consensus_3205#1 ------------------------------------------------------------ consensus_3205#0 GAACCACTCGAACGAGC 666 consensus_3205#1 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||