cluster # 3207

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Oryza sativa
cluster # 3207 cluster # 3207 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3207#0 length = 585 sequences # 1

consensus_3207#1 length = 535 sequences # 1

consensusID : consensus_3207#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 585
fasta sequence

                              [TCTTGCCAAGCACCCCATGNCACTGTGCTCAAACTAAATCGTGAGNCAACCACACACCAACCCCTGTGCGCACACTCTTCTTCGCTCAATTCTGGGACTCGCAACCTGGTCGATTCAATGAATCAACTCAAAGACCATCTGCTGCCCTGTTCAAGTTAGCACATGTTTTGGTCGTTGCACCTTTTGTGATGAAGCAAGCAAAATTTTACATCCACCATGTCTATCTGGAAGTTATCCTGATGATGGTGATGATCCGTCATTCATGACTACGATGTTACTGATGCCATTCTTATGTATGGTTCTGTTTAACCCATTCGTATCTATGATTTTGTTTCACCCCAAATTAGCCAAGACAAGGGCAAGTTTTGGTCTTAAGTGCTTGTTAAGAGGATGAGAAGCACTCCAGAACNCACGGAAGAAGTGCTGAAGAGGATCAGCTTTTGTAATTTGTTCTGCTGGAGTACCCTTTTGTGTCTGACACAAATGTTTTAAGTGGAGTCTGGTCTTTAGTTTATGCTGGATGTGACTAGATTACTTTTGGGTTTATCTGGATNCCGACTAGATTACTTTTGGTTAAAAAAAAAA]

[+] EMBL BM420463             [TCTTGCCAAGCACCCCATGNCACTGTGCTCAAACTAAATCGTGAGNCAACCACACACCAACCCCTGTGCGCACACTCTTCTTCGCTCAATTCTGGGACTCGCAACCTGGTCGATTCAATGAATCAACTCAAAGACCATCTGCTGCCCTGTTCAAGTTAGCACATGTTTTGGTCGTTGCACCTTTTGTGATGAAGCAAGCAAAATTTTACATCCACCATGTCTATCTGGAAGTTATCCTGATGATGGTGATGATCCGTCATTCATGACTACGATGTTACTGATGCCATTCTTATGTATGGTTCTGTTTAACCCATTCGTATCTATGATTTTGTTTCACCCCAAATTAGCCAAGACAAGGGCAAGTTTTGGTCTTAAGTGCTTGTTAAGAGGATGAGAAGCACTCCAGAACNCACGGAAGAAGTGCTGAAGAGGATCAGCTTTTGTAATTTGTTCTGCTGGAGTACCCTTTTGTGTCTGACACAAATGTTTTAAGTGGAGTCTGGTCTTTAGTTTATGCTGGATGTGACTAGATTACTTTTGGGTTTATCTGGATNCCGACTAGATTACTTTTGGTTAAAAAAAAAA]




>consensus_3207#0
TCTTGCCAAGCACCCCATGNCACTGTGCTCAAACTAAATCGTGAGNCAACCACACACCAA
CCCCTGTGCGCACACTCTTCTTCGCTCAATTCTGGGACTCGCAACCTGGTCGATTCAATG
AATCAACTCAAAGACCATCTGCTGCCCTGTTCAAGTTAGCACATGTTTTGGTCGTTGCAC
CTTTTGTGATGAAGCAAGCAAAATTTTACATCCACCATGTCTATCTGGAAGTTATCCTGA
TGATGGTGATGATCCGTCATTCATGACTACGATGTTACTGATGCCATTCTTATGTATGGT
TCTGTTTAACCCATTCGTATCTATGATTTTGTTTCACCCCAAATTAGCCAAGACAAGGGC
AAGTTTTGGTCTTAAGTGCTTGTTAAGAGGATGAGAAGCACTCCAGAACNCACGGAAGAA
GTGCTGAAGAGGATCAGCTTTTGTAATTTGTTCTGCTGGAGTACCCTTTTGTGTCTGACA
CAAATGTTTTAAGTGGAGTCTGGTCTTTAGTTTATGCTGGATGTGACTAGATTACTTTTG
GGTTTATCTGGATNCCGACTAGATTACTTTTGGTTAAAAAAAAAA

consensusID : consensus_3207#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 535
fasta sequence

                              [GTTCAAGTTAGCACATTTTTTGTTCTTCACCTTTTGTGATGAACAACAAATTTAACATCCACCATGTCTATCTGGAAGTTATCCTGATGATGGTGATGATGCCGTCATTCATGACTACGATGTTACTGATGCCATTCTTATGTATGGTTCTGTTTAACCCATTCGTATCTATGATTTTGTTTCACCCAAATTAGCAAAGACAAGGGCAAGTTTTGGTCTTAAGTGCTTGTTAAGAGGATGAGAAGCAACTGCAGAACTAACGGAAGAAGTGCCTGAAGAGGATCAGCTTTTGTAATTTGTTCTGCTGGAGTACCCTTTTGTGTCTGAACAAATGTTTTAGTGGAGGTCTGGTCTTTAGTTTATGCTGGATGTGACTAGATTACTTTTGGTTTATGCTGGATGTGACTAGATTACTTTTGGTTTATGCTGGATGTGACTAGATTACTCGTGGTGTTGGTAGGTATTTTTGTTCTTGTTTTCTTTTGCTGTTAATGTTTGCAGCCTGGAAGTGAAAGGGATCGTATTTCACTAAAAA]

[+] EMBL BI803490             [GTTCAAGTTAGCACATTTTTTGTTCTTCACCTTTTGTGATGAACAACAAATTTAACATCCACCATGTCTATCTGGAAGTTATCCTGATGATGGTGATGATGCCGTCATTCATGACTACGATGTTACTGATGCCATTCTTATGTATGGTTCTGTTTAACCCATTCGTATCTATGATTTTGTTTCACCCAAATTAGCAAAGACAAGGGCAAGTTTTGGTCTTAAGTGCTTGTTAAGAGGATGAGAAGCAACTGCAGAACTAACGGAAGAAGTGCCTGAAGAGGATCAGCTTTTGTAATTTGTTCTGCTGGAGTACCCTTTTGTGTCTGAACAAATGTTTTAGTGGAGGTCTGGTCTTTAGTTTATGCTGGATGTGACTAGATTACTTTTGGTTTATGCTGGATGTGACTAGATTACTTTTGGTTTATGCTGGATGTGACTAGATTACTCGTGGTGTTGGTAGGTATTTTTGTTCTTGTTTTCTTTTGCTGTTAATGTTTGCAGCCTGGAAGTGAAAGGGATCGTATTTCACTAAAAA]




>consensus_3207#1
GTTCAAGTTAGCACATTTTTTGTTCTTCACCTTTTGTGATGAACAACAAATTTAACATCC
ACCATGTCTATCTGGAAGTTATCCTGATGATGGTGATGATGCCGTCATTCATGACTACGA
TGTTACTGATGCCATTCTTATGTATGGTTCTGTTTAACCCATTCGTATCTATGATTTTGT
TTCACCCAAATTAGCAAAGACAAGGGCAAGTTTTGGTCTTAAGTGCTTGTTAAGAGGATG
AGAAGCAACTGCAGAACTAACGGAAGAAGTGCCTGAAGAGGATCAGCTTTTGTAATTTGT
TCTGCTGGAGTACCCTTTTGTGTCTGAACAAATGTTTTAGTGGAGGTCTGGTCTTTAGTT
TATGCTGGATGTGACTAGATTACTTTTGGTTTATGCTGGATGTGACTAGATTACTTTTGG
TTTATGCTGGATGTGACTAGATTACTCGTGGTGTTGGTAGGTATTTTTGTTCTTGTTTTC
TTTTGCTGTTAATGTTTGCAGCCTGGAAGTGAAAGGGATCGTATTTCACTAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3207#0      TCTTGCCAAGCACCCCATGNCACTGTGCTCAAACTAAATCGTGAGNCAACCACACACCAA 60
consensus_3207#1      ------------------------------------------------------------
                                                                                  

consensus_3207#0      CCCCTGTGCGCACACTCTTCTTCGCTCAATTCTGGGACTCGCAACCTGGTCGATTCAATG 120
consensus_3207#1      ------------------------------------------------------------
                                                                                  

consensus_3207#0      AATCAACTCAAAGACCATCTGCTGCCCTGTTCAAGTTAGCACATGTTTTGGTCGTTGCAC 180
consensus_3207#1      ----------------------------GTTCAAGTTAGCACATTTTTTGTTCTT--CAC 30
                                                  **************** ***** ** *  ***

consensus_3207#0      CTTTTGTGATGAAGCAAGCAAAATTTTACATCCACCATGTCTATCTGGAAGTTATCCTGA 240
consensus_3207#1      CTTTTGTGATGAA-CAAC--AAATTTAACATCCACCATGTCTATCTGGAAGTTATCCTGA 87
                      ************* ***   ****** *********************************

consensus_3207#0      TGATGGTGATGAT-CCGTCATTCATGACTACGATGTTACTGATGCCATTCTTATGTATGG 299
consensus_3207#1      TGATGGTGATGATGCCGTCATTCATGACTACGATGTTACTGATGCCATTCTTATGTATGG 147
                      ************* **********************************************

consensus_3207#0      TTCTGTTTAACCCATTCGTATCTATGATTTTGTTTCACCCCAAATTAGCCAAGACAAGGG 359
consensus_3207#1      TTCTGTTTAACCCATTCGTATCTATGATTTTGTTTCACCC-AAATTAGCAAAGACAAGGG 206
                      **************************************** ******** **********

consensus_3207#0      CAAGTTTTGGTCTTAAGTGCTTGTTAAGAGGATGAGAAGCA-CTCCAGAACNCACGGAAG 418
consensus_3207#1      CAAGTTTTGGTCTTAAGTGCTTGTTAAGAGGATGAGAAGCAACTGCAGAACTAACGGAAG 266
                      ***************************************** ** ******  *******

consensus_3207#0      AAGTGC-TGAAGAGGATCAGCTTTTGTAATTTGTTCTGCTGGAGTACCCTTTTGTGTCTG 477
consensus_3207#1      AAGTGCCTGAAGAGGATCAGCTTTTGTAATTTGTTCTGCTGGAGTACCCTTTTGTGTCTG 326
                      ****** *****************************************************

consensus_3207#0      ACACAAATGTTTTAAGTGGAGTCTGGTCTTTAGTTTATGCTGGATGTGACTAGATTACTT 537
consensus_3207#1      A-ACAAATGTTTTAGTGGAGGTCTGGTCTTTAGTTTATGCTGGATGTGACTAGATTACTT 385
                      * ************   *  ****************************************

consensus_3207#0      TTGGGTTTATCTGGATNCCGACTAGATTACTTTTGGTTAAAAAAAAAA------------ 585
consensus_3207#1      TTGGTTTATGCTGGATGT-GACTAGATTACTTTTGGTTTATGCTGGATGTGACTAGATTA 444
                      **** **   ******   ******************* *      *             

consensus_3207#0      ------------------------------------------------------------
consensus_3207#1      CTCGTGGTGTTGGTAGGTATTTTTGTTCTTGTTTTCTTTTGCTGTTAATGTTTGCAGCCT 504
                                                                                  

consensus_3207#0      -------------------------------
consensus_3207#1      GGAAGTGAAAGGGATCGTATTTCACTAAAAA 535