These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_321#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTCACAAAAATGGCCCAAATCATAACACCAACCGCATCGTTAAGGTACTTGTATGGCCAAAAAACAACACAAATAACTGACGACGGCCACTCATTTTTACTCAAATAAAAGGGCTCCAAAGTTATACATGACAGTCTTTGTTTTATCAGCCCAGGGTTGACTAAAAGGACATTTTTATGCTAAGTTGCCATAAATTTTTAGCAATCGAAAGTTTTTTCAAACAAAGGACATGGGCCAATTTTTTAAGCTAGCAAAGGAATCTTTAATCATTCTGTTCTTTGGGAGGATTTTTAAAATGGAACTATTCGTTGATTTTGTACTAAACAAACAATGAACCGTAGCAAATTTGGACAATTATGCAGGGAATACATAACATCTGCCAACAGGGAAAATTTTATCTCATCAATCGGGGGAATTCCCAGATAATAATACCATATACCAGGTTACCACCTCTTTTTGACTTCTAAGGGAAAAACTCAAATGTCGGTAACCAGTCTTAAAAGCAGGATGGTAAAAATTCTGCTCAGTGTTACAAAACGTACGATAATACTCAAAATAGCCTCCATTGATGGAATTCAGGCATGACCTTCGGAGTGTTAGCCTCTACAACATTGGCCAGAAACTCATCGTTTTTTTAACCATATTTGCTTTCAGGGTATGATTTGCAT] [+] EMBL CA760430 [TTTTTTTTTTTTTTTTTTTTTTTTTTCACAAAAATGGCCCAAATCATAACACCAACCGCATCGTTAAGGTACTTGTATGGCCAAAAAACAACACAAATAACTGACGACGGCCACTCATTTTTACTCAAATAAAAGGGCTCCAAAGTTATACATGACAGTCTTTGTTTTATCAGCCCAGGGTTGACTAAAAGGACATTTTTATGCTAAGTTGCCATAAATTTTTAGCAATCGAAAGTTTTTTCAAACAAAGGACATGGGCCAATTTTTTAAGCTAGCAAAGGAATCTTTAATCATTCTGTTCTTTGGGAGGATTTTTAAAATGGAACTATTCGTTGATTTTGTACTAAACAAACAATGAACCGTAGCAAATTTGGACAATTATGCAGGGAATACATAACATCTGCCAACAGGGAAAATTTTATCTCATCAATCGGGGGAATTCCCAGATAATAATACCATATACCAGGTTACCACCTCTTTTTGACTTCTAAGGGAAAAACTCAAATGTCGGTAACCAGTCTTAAAAGCAGGATGGTAAAAATTCTGCTCAGTGTTACAAAACGTACGATAATACTCAAAATAGCCTCCATTGATGGAATTCAGGCATGACCTTCGGAGTGTTAGCCTCTACAACATTGGCCAGAAACTCATCGTTTTTTTAACCATATTTGCTTTCAGGGTATGATTTGCAT] consensusID : consensus_321#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence [TTTTTTTTTTTTTAAATAAAAATTATCATCTGATTATTATTATTATTATTATTATAACACGAATTCAGGTACACTTTCAGCCATAAACAACACAAATGACCGACTACATCCACTCATTCTAGTTCACATAGATGGTCCAGATCATAACACCAACCGCATCGCTCAGGTACATGTATAGCCAAGAAACAACACAAATGACTGACGACGGCCACTCATTTCTACTCAAATCATAGTGCTCCAAAGCTATACATGACAGTCTCTGTTCTATCAGTCCAAGGTTGACTAAAATGACAATTTTATGCTAAGTTGCCATAAATTTTTAGCAATCGTAAGTTCTTTCATACTAATGACATGTGCCAATTTTCTAAGCTAGCAAAGGAATCTCTAATCATTCTGTTCTCTGGGAGGATTTTTCAGATGGGACTATTCGTTGATATTGTACTAAACAGACNATGAAACATAGCATATCTGGACGATTATGCAGGGAATACATAACATCTGCCAACATGGTAAATTCTATCTCATCAATCGTGTGAATTCCCAGATGATAATACCATATACCAAGTTACCAACTCTTCTTGACTTCTCATGGAGAAACTCATATGTCGGGGACCAGTCTTAGGAGCATGAGGGGGAAAATTCTGCTCAAGGGTACNAAACGTACGATAATACTCAAAAA] [+] EMBL CA761306 [TTTTTTTTTTTTTAAATAAAAATTATCATCTGATTATTATTATTATTATTATTATAACACGAATTCAGGTACACTTTCAGCCATAAACAACACAAATGACCGACTACATCCACTCATTCTAGTTCACATAGATGGTCCAGATCATAACACCAACCGCATCGCTCAGGTACATGTATAGCCAAGAAACAACACAAATGACTGACGACGGCCACTCATTTCTACTCAAATCATAGTGCTCCAAAGCTATACATGACAGTCTCTGTTCTATCAGTCCAAGGTTGACTAAAATGACAATTTTATGCTAAGTTGCCATAAATTTTTAGCAATCGTAAGTTCTTTCATACTAATGACATGTGCCAATTTTCTAAGCTAGCAAAGGAATCTCTAATCATTCTGTTCTCTGGGAGGATTTTTCAGATGGGACTATTCGTTGATATTGTACTAAACAGACNATGAAACATAGCATATCTGGACGATTATGCAGGGAATACATAACATCTGCCAACATGGTAAATTCTATCTCATCAATCGTGTGAATTCCCAGATGATAATACCATATACCAAGTTACCAACTCTTCTTGACTTCTCATGGAGAAACTCATATGTCGGGGACCAGTCTTAGGAGCATGAGGGGGAAAATTCTGCTCAAGGGTACNAAACGTACGATAATACTCAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_321#0 ------------------------------------------------------------ consensus_321#1 TTTTTTTTTTTTTAAATAAAAATTATCATCTGATTATTATTATTATTATTATTATAACAC 60 consensus_321#0 --------------------------------------TTTTTTTTTTTTTTTTTTTTTT 22 consensus_321#1 GAATTCAGGTACACTTTCAGCCATAAACAACACAAATGACCGACTACATCCACTCATTCT 120 * * * ** * consensus_321#0 TTTTCACAAAAATGGCCCAAATCATAACACCAACCGCATCGTTAAGGTACTTGTATGGCC 82 consensus_321#1 AGTTCACATAGATGGTCCAGATCATAACACCAACCGCATCGCTCAGGTACATGTATAGCC 180 ****** * **** *** ********************* * ****** ***** *** consensus_321#0 AAAAAACAACACAAATAACTGACGACGGCCACTCATTTTTACTCAAATAAAAGGGCTCCA 142 consensus_321#1 AAGAAACAACACAAATGACTGACGACGGCCACTCATTTCTACTCAAATCATAGTGCTCCA 240 ** ************* ********************* ********* * ** ****** consensus_321#0 AAGTTATACATGACAGTCTTTGTTTTATCAGCCCAGGGTTGACTAAAAGGACATTTTTAT 202 consensus_321#1 AAGCTATACATGACAGTCTCTGTTCTATCAGTCCAAGGTTGACTAAAATGACAATTTTAT 300 *** *************** **** ****** *** ************ **** ****** consensus_321#0 GCTAAGTTGCCATAAATTTTTAGCAATCGAAAGTTTTTTCAAACAAAGGACATGGGCCAA 262 consensus_321#1 GCTAAGTTGCCATAAATTTTTAGCAATCGTAAGTTCTTTCATACTAATGACATGTGCCAA 360 ***************************** ***** ***** ** ** ****** ***** consensus_321#0 TTTTTTAAGCTAGCAAAGGAATCTTTAATCATTCTGTTCTTTGGGAGGATTTTTAAAATG 322 consensus_321#1 TTTTCTAAGCTAGCAAAGGAATCTCTAATCATTCTGTTCTCTGGGAGGATTTTTCAGATG 420 **** ******************* *************** ************* * *** consensus_321#0 GAACTATTCGTTGATTTTGTACTAAACAAACAATGAACCGTAGCAAATTTGGACAATTAT 382 consensus_321#1 GGACTATTCGTTGATATTGTACTAAACAGACNATGAAACATAGCATATCTGGACGATTAT 480 * ************* ************ ** ***** * ***** ** ***** ***** consensus_321#0 GCAGGGAATACATAACATCTGCCAACAGGGAAAATTTTATCTCATCAATCGGGGGAATTC 442 consensus_321#1 GCAGGGAATACATAACATCTGCCAACATGGTAAATTCTATCTCATCAATCGTGTGAATTC 540 *************************** ** ***** ************** * ****** consensus_321#0 CCAGATAATAATACCATATACCAGGTTACCACCTCTTTTTGACTTCTAAGGGAAAAACTC 502 consensus_321#1 CCAGATGATAATACCATATACCAAGTTACCAACTCTTCTTGACTTCTCATGGAGAAACTC 600 ****** **************** ******* ***** ********* * *** ****** consensus_321#0 AAATGTCGGTAACCAGTCTTAAAAGCAGGATGGTAAAAATTCTGCTCAGTGTTACAAAAC 562 consensus_321#1 ATATGTCGGGGACCAGTCTTAGGAGCATGAGGGGGAAAATTCTGCTCAAGGGTACNAAAC 660 * ******* ********** **** ** ** ************* * *** **** consensus_321#0 GTACGATAATACTCAAAATAGCCTCCATTGATGGAATTCAGGCATGACCTTCGGAGTGTT 622 consensus_321#1 GTACGATAATACTCAAAAA----------------------------------------- 679 ****************** consensus_321#0 AGCCTCTACAACATTGGCCAGAAACTCATCGTTTTTTTAACCATATTTGCTTTCAGGGTA 682 consensus_321#1 ------------------------------------------------------------ consensus_321#0 TGATTTGCAT 692 consensus_321#1 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||