cluster # 3210

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3210 cluster # 3210 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3210#0 length = 726 sequences # 1

consensus_3210#1 length = 498 sequences # 1

consensusID : consensus_3210#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 726
fasta sequence

                              [TCTCTTCCTCGTCTTCTTCTCCGGCGAGCTCGACGGGCCGCGCCGCCGCATCGGCCGCAGTCGACGGGATGGACGGGCAGGGGGCGTGGAGGGGTGGGGCTTCTGCTTCCTCCAGGATATCGTACAAGAACGCCACCGTCGCGGTGTGCGCAATCAACCTCCTCGCGTGCGCTCTCCTCTTCCGCAACTACTACTCGTCCTGGCCGCGCATCGCCGGCGACCACCAGTTCGATTCTGCTCAGCTACGGTTTATATGGGAGTCGGAAGAGTTACGTCGTGCTATGGAGCCTGTGGATTTGATCAGGAGAGTGAAGGAAATCGAACAAGAAGCTTATGGTGAGCATGGCATGATGACACAAGAAGATGCCAAGCAGGCAGCTGCTGTTGATGCATCAAAAAGGTTGCAAGATTTAAGGGCAGGGAATGATGGTAGCAGCCAAAAAGCTCTTGAGGAATGGCGCAAACGGAAGATGGAGCGTGCGAGGCAGCGGGCGATTGAAAAGAACGGGACCTCATCAGCTGCGAAAACGCGATGAATTGGGAGGTAGCTATTGCTGCACATCACCTTTGGGGGTGTCCTGGAGCTGCTGCTGTACGTGGGGTGGTCTCCTGGTGTCTGTAAAATTTCTTGTACATCGTGTTGTTGTTGTTGTCTAGATCCATTTTTTATTCTTCTGTTTCTCTAGTAAAAGACCAACTGGGTAGAAAAAAAAATTAAAGCTCATC]

[+] EMBL AK059572             [TCTCTTCCTCGTCTTCTTCTCCGGCGAGCTCGACGGGCCGCGCCGCCGCATCGGCCGCAGTCGACGGGATGGACGGGCAGGGGGCGTGGAGGGGTGGGGCTTCTGCTTCCTCCAGGATATCGTACAAGAACGCCACCGTCGCGGTGTGCGCAATCAACCTCCTCGCGTGCGCTCTCCTCTTCCGCAACTACTACTCGTCCTGGCCGCGCATCGCCGGCGACCACCAGTTCGATTCTGCTCAGCTACGGTTTATATGGGAGTCGGAAGAGTTACGTCGTGCTATGGAGCCTGTGGATTTGATCAGGAGAGTGAAGGAAATCGAACAAGAAGCTTATGGTGAGCATGGCATGATGACACAAGAAGATGCCAAGCAGGCAGCTGCTGTTGATGCATCAAAAAGGTTGCAAGATTTAAGGGCAGGGAATGATGGTAGCAGCCAAAAAGCTCTTGAGGAATGGCGCAAACGGAAGATGGAGCGTGCGAGGCAGCGGGCGATTGAAAAGAACGGGACCTCATCAGCTGCGAAAACGCGATGAATTGGGAGGTAGCTATTGCTGCACATCACCTTTGGGGGTGTCCTGGAGCTGCTGCTGTACGTGGGGTGGTCTCCTGGTGTCTGTAAAATTTCTTGTACATCGTGTTGTTGTTGTTGTCTAGATCCATTTTTTATTCTTCTGTTTCTCTAGTAAAAGACCAACTGGGTAGAAAAAAAAATTAAAGCTCATC]




>consensus_3210#0
TCTCTTCCTCGTCTTCTTCTCCGGCGAGCTCGACGGGCCGCGCCGCCGCATCGGCCGCAG
TCGACGGGATGGACGGGCAGGGGGCGTGGAGGGGTGGGGCTTCTGCTTCCTCCAGGATAT
CGTACAAGAACGCCACCGTCGCGGTGTGCGCAATCAACCTCCTCGCGTGCGCTCTCCTCT
TCCGCAACTACTACTCGTCCTGGCCGCGCATCGCCGGCGACCACCAGTTCGATTCTGCTC
AGCTACGGTTTATATGGGAGTCGGAAGAGTTACGTCGTGCTATGGAGCCTGTGGATTTGA
TCAGGAGAGTGAAGGAAATCGAACAAGAAGCTTATGGTGAGCATGGCATGATGACACAAG
AAGATGCCAAGCAGGCAGCTGCTGTTGATGCATCAAAAAGGTTGCAAGATTTAAGGGCAG
GGAATGATGGTAGCAGCCAAAAAGCTCTTGAGGAATGGCGCAAACGGAAGATGGAGCGTG
CGAGGCAGCGGGCGATTGAAAAGAACGGGACCTCATCAGCTGCGAAAACGCGATGAATTG
GGAGGTAGCTATTGCTGCACATCACCTTTGGGGGTGTCCTGGAGCTGCTGCTGTACGTGG
GGTGGTCTCCTGGTGTCTGTAAAATTTCTTGTACATCGTGTTGTTGTTGTTGTCTAGATC
CATTTTTTATTCTTCTGTTTCTCTAGTAAAAGACCAACTGGGTAGAAAAAAAAATTAAAG
CTCATC

consensusID : consensus_3210#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 498
fasta sequence

                              [ATGGGAATCCACGAAGAATTACTCGTGCCTATGGAACCTGTGGATTTGATCCAGGAGATGAAGGAAATTGAACACGGAATCTTATGGTGACCACTGGCACTGATGACACAAGAAGATGCCACACAGACAGCTGCTTTGATGCATCCAAAAGCTGCAAGATTTAAGGGCAGGGAATGATGGTACCAGCCCAAAAGCTCTTGAGGAATGGCGCACAACGGAAGATGGAGCGTGCGAGGCAGCGGGCGATTGAAAAGAACGGGACCTCATCAGCTGCGAAAACGCGATGAATTGGGAGGTAGCTATTGCTGCACATCACCTTTGGGGGTGTCCTGGAGCTGCTGCTGTACGTATGGTGGTCTCCTGGTGTCTGTAAAATTTCTTGTACATCGTGTTGTTGTTGTTGTTGTTTAGATCCATTTTATTTTCTTCAATTTCTCAAGTAAAAGACACAACCGGGTAGAAAAATTAAAGCTCATATTTTTCGACCTCAAAAAAAAA]

[+] EMBL BI801460             [ATGGGAATCCACGAAGAATTACTCGTGCCTATGGAACCTGTGGATTTGATCCAGGAGATGAAGGAAATTGAACACGGAATCTTATGGTGACCACTGGCACTGATGACACAAGAAGATGCCACACAGACAGCTGCTTTGATGCATCCAAAAGCTGCAAGATTTAAGGGCAGGGAATGATGGTACCAGCCCAAAAGCTCTTGAGGAATGGCGCACAACGGAAGATGGAGCGTGCGAGGCAGCGGGCGATTGAAAAGAACGGGACCTCATCAGCTGCGAAAACGCGATGAATTGGGAGGTAGCTATTGCTGCACATCACCTTTGGGGGTGTCCTGGAGCTGCTGCTGTACGTATGGTGGTCTCCTGGTGTCTGTAAAATTTCTTGTACATCGTGTTGTTGTTGTTGTTGTTTAGATCCATTTTATTTTCTTCAATTTCTCAAGTAAAAGACACAACCGGGTAGAAAAATTAAAGCTCATATTTTTCGACCTCAAAAAAAAA]




>consensus_3210#1
ATGGGAATCCACGAAGAATTACTCGTGCCTATGGAACCTGTGGATTTGATCCAGGAGATG
AAGGAAATTGAACACGGAATCTTATGGTGACCACTGGCACTGATGACACAAGAAGATGCC
ACACAGACAGCTGCTTTGATGCATCCAAAAGCTGCAAGATTTAAGGGCAGGGAATGATGG
TACCAGCCCAAAAGCTCTTGAGGAATGGCGCACAACGGAAGATGGAGCGTGCGAGGCAGC
GGGCGATTGAAAAGAACGGGACCTCATCAGCTGCGAAAACGCGATGAATTGGGAGGTAGC
TATTGCTGCACATCACCTTTGGGGGTGTCCTGGAGCTGCTGCTGTACGTATGGTGGTCTC
CTGGTGTCTGTAAAATTTCTTGTACATCGTGTTGTTGTTGTTGTTGTTTAGATCCATTTT
ATTTTCTTCAATTTCTCAAGTAAAAGACACAACCGGGTAGAAAAATTAAAGCTCATATTT
TTCGACCTCAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3210#0      TCTCTTCCTCGTCTTCTTCTCCGGCGAGCTCGACGGGCCGCGCCGCCGCATCGGCCGCAG 60
consensus_3210#1      ------------------------------------------------------------
                                                                                  

consensus_3210#0      TCGACGGGATGGACGGGCAGGGGGCGTGGAGGGGTGGGGCTTCTGCTTCCTCCAGGATAT 120
consensus_3210#1      ------------------------------------------------------------
                                                                                  

consensus_3210#0      CGTACAAGAACGCCACCGTCGCGGTGTGCGCAATCAACCTCCTCGCGTGCGCTCTCCTCT 180
consensus_3210#1      ------------------------------------------------------------
                                                                                  

consensus_3210#0      TCCGCAACTACTACTCGTCCTGGCCGCGCATCGCCGGCGACCACCAGTTCGATTCTGCTC 240
consensus_3210#1      ------------------------------------------------------------
                                                                                  

consensus_3210#0      AGCTACGGTTTATATGGGAGTCG--GAAGAGTTACGTCGTGC-TATGGAGCCTGTGGATT 297
consensus_3210#1      -------------ATGGGAATCCACGAAGAATTAC-TCGTGCCTATGGAACCTGTGGATT 46
                                   ****** **   ***** **** ****** ****** **********

consensus_3210#0      TGATCAGGAGAGTGAAGGAAATCGAACA-AGAAGCTTATGGTGAGCA-TGGCA-TGATGA 354
consensus_3210#1      TGATCCAGGAGATGAAGGAAATTGAACACGGAATCTTATGGTGACCACTGGCACTGATGA 106
                      *****  *    ********** *****  *** ********** ** ***** ******

consensus_3210#0      CACAAGAAGATGCCAAGCAGGCAGCTGCTGTTGATGCATCAAAAAGGTTGCAAGATTTAA 414
consensus_3210#1      CACAAGAAGATGCCACACAGACAGCTGCT-TTGATGCATCCAAAAG-CTGCAAGATTTAA 164
                      ***************  *** ******** ********** *****  ************

consensus_3210#0      GGGCAGGGAATGATGGTAGCAGCCAAAAAGCTCTTGAGGAATGGCGCA-AACGGAAGATG 473
consensus_3210#1      GGGCAGGGAATGATGGTACCAGCCCAAAAGCTCTTGAGGAATGGCGCACAACGGAAGATG 224
                      ****************** ***** *********************** ***********

consensus_3210#0      GAGCGTGCGAGGCAGCGGGCGATTGAAAAGAACGGGACCTCATCAGCTGCGAAAACGCGA 533
consensus_3210#1      GAGCGTGCGAGGCAGCGGGCGATTGAAAAGAACGGGACCTCATCAGCTGCGAAAACGCGA 284
                      ************************************************************

consensus_3210#0      TGAATTGGGAGGTAGCTATTGCTGCACATCACCTTTGGGGGTGTCCTGGAGCTGCTGCTG 593
consensus_3210#1      TGAATTGGGAGGTAGCTATTGCTGCACATCACCTTTGGGGGTGTCCTGGAGCTGCTGCTG 344
                      ************************************************************

consensus_3210#0      TACGTGGGGTGGTCTCCTGGTGTCTGTAAAATTTCTTGTACATCGTGTTGTTGTTGTTGT 653
consensus_3210#1      TACGTATGGTGGTCTCCTGGTGTCTGTAAAATTTCTTGTACATCGTGTTGTTGTTGTTGT 404
                      *****  *****************************************************

consensus_3210#0      C---TAGATCCATTTTTTATTCTTCTGTTTCTCTAGTAAAAGAC-CAACTGGGTAGAAAA 709
consensus_3210#1      TGTTTAGATCCATTTTATTTTCTTCAATTTCTCAAGTAAAAGACACAACCGGGTAGAAAA 464
                          ************ * ******  ****** ********** **** **********

consensus_3210#0      A--AAAATTAAAGCTCATC--------------- 726
consensus_3210#1      ATTAAAGCTCATATTTTTCGACCTCAAAAAAAAA 498
                      *  ***  * *   *  **