These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3210#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 726 fasta sequence [TCTCTTCCTCGTCTTCTTCTCCGGCGAGCTCGACGGGCCGCGCCGCCGCATCGGCCGCAGTCGACGGGATGGACGGGCAGGGGGCGTGGAGGGGTGGGGCTTCTGCTTCCTCCAGGATATCGTACAAGAACGCCACCGTCGCGGTGTGCGCAATCAACCTCCTCGCGTGCGCTCTCCTCTTCCGCAACTACTACTCGTCCTGGCCGCGCATCGCCGGCGACCACCAGTTCGATTCTGCTCAGCTACGGTTTATATGGGAGTCGGAAGAGTTACGTCGTGCTATGGAGCCTGTGGATTTGATCAGGAGAGTGAAGGAAATCGAACAAGAAGCTTATGGTGAGCATGGCATGATGACACAAGAAGATGCCAAGCAGGCAGCTGCTGTTGATGCATCAAAAAGGTTGCAAGATTTAAGGGCAGGGAATGATGGTAGCAGCCAAAAAGCTCTTGAGGAATGGCGCAAACGGAAGATGGAGCGTGCGAGGCAGCGGGCGATTGAAAAGAACGGGACCTCATCAGCTGCGAAAACGCGATGAATTGGGAGGTAGCTATTGCTGCACATCACCTTTGGGGGTGTCCTGGAGCTGCTGCTGTACGTGGGGTGGTCTCCTGGTGTCTGTAAAATTTCTTGTACATCGTGTTGTTGTTGTTGTCTAGATCCATTTTTTATTCTTCTGTTTCTCTAGTAAAAGACCAACTGGGTAGAAAAAAAAATTAAAGCTCATC] [+] EMBL AK059572 [TCTCTTCCTCGTCTTCTTCTCCGGCGAGCTCGACGGGCCGCGCCGCCGCATCGGCCGCAGTCGACGGGATGGACGGGCAGGGGGCGTGGAGGGGTGGGGCTTCTGCTTCCTCCAGGATATCGTACAAGAACGCCACCGTCGCGGTGTGCGCAATCAACCTCCTCGCGTGCGCTCTCCTCTTCCGCAACTACTACTCGTCCTGGCCGCGCATCGCCGGCGACCACCAGTTCGATTCTGCTCAGCTACGGTTTATATGGGAGTCGGAAGAGTTACGTCGTGCTATGGAGCCTGTGGATTTGATCAGGAGAGTGAAGGAAATCGAACAAGAAGCTTATGGTGAGCATGGCATGATGACACAAGAAGATGCCAAGCAGGCAGCTGCTGTTGATGCATCAAAAAGGTTGCAAGATTTAAGGGCAGGGAATGATGGTAGCAGCCAAAAAGCTCTTGAGGAATGGCGCAAACGGAAGATGGAGCGTGCGAGGCAGCGGGCGATTGAAAAGAACGGGACCTCATCAGCTGCGAAAACGCGATGAATTGGGAGGTAGCTATTGCTGCACATCACCTTTGGGGGTGTCCTGGAGCTGCTGCTGTACGTGGGGTGGTCTCCTGGTGTCTGTAAAATTTCTTGTACATCGTGTTGTTGTTGTTGTCTAGATCCATTTTTTATTCTTCTGTTTCTCTAGTAAAAGACCAACTGGGTAGAAAAAAAAATTAAAGCTCATC] consensusID : consensus_3210#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 498 fasta sequence [ATGGGAATCCACGAAGAATTACTCGTGCCTATGGAACCTGTGGATTTGATCCAGGAGATGAAGGAAATTGAACACGGAATCTTATGGTGACCACTGGCACTGATGACACAAGAAGATGCCACACAGACAGCTGCTTTGATGCATCCAAAAGCTGCAAGATTTAAGGGCAGGGAATGATGGTACCAGCCCAAAAGCTCTTGAGGAATGGCGCACAACGGAAGATGGAGCGTGCGAGGCAGCGGGCGATTGAAAAGAACGGGACCTCATCAGCTGCGAAAACGCGATGAATTGGGAGGTAGCTATTGCTGCACATCACCTTTGGGGGTGTCCTGGAGCTGCTGCTGTACGTATGGTGGTCTCCTGGTGTCTGTAAAATTTCTTGTACATCGTGTTGTTGTTGTTGTTGTTTAGATCCATTTTATTTTCTTCAATTTCTCAAGTAAAAGACACAACCGGGTAGAAAAATTAAAGCTCATATTTTTCGACCTCAAAAAAAAA] [+] EMBL BI801460 [ATGGGAATCCACGAAGAATTACTCGTGCCTATGGAACCTGTGGATTTGATCCAGGAGATGAAGGAAATTGAACACGGAATCTTATGGTGACCACTGGCACTGATGACACAAGAAGATGCCACACAGACAGCTGCTTTGATGCATCCAAAAGCTGCAAGATTTAAGGGCAGGGAATGATGGTACCAGCCCAAAAGCTCTTGAGGAATGGCGCACAACGGAAGATGGAGCGTGCGAGGCAGCGGGCGATTGAAAAGAACGGGACCTCATCAGCTGCGAAAACGCGATGAATTGGGAGGTAGCTATTGCTGCACATCACCTTTGGGGGTGTCCTGGAGCTGCTGCTGTACGTATGGTGGTCTCCTGGTGTCTGTAAAATTTCTTGTACATCGTGTTGTTGTTGTTGTTGTTTAGATCCATTTTATTTTCTTCAATTTCTCAAGTAAAAGACACAACCGGGTAGAAAAATTAAAGCTCATATTTTTCGACCTCAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3210#0 TCTCTTCCTCGTCTTCTTCTCCGGCGAGCTCGACGGGCCGCGCCGCCGCATCGGCCGCAG 60 consensus_3210#1 ------------------------------------------------------------ consensus_3210#0 TCGACGGGATGGACGGGCAGGGGGCGTGGAGGGGTGGGGCTTCTGCTTCCTCCAGGATAT 120 consensus_3210#1 ------------------------------------------------------------ consensus_3210#0 CGTACAAGAACGCCACCGTCGCGGTGTGCGCAATCAACCTCCTCGCGTGCGCTCTCCTCT 180 consensus_3210#1 ------------------------------------------------------------ consensus_3210#0 TCCGCAACTACTACTCGTCCTGGCCGCGCATCGCCGGCGACCACCAGTTCGATTCTGCTC 240 consensus_3210#1 ------------------------------------------------------------ consensus_3210#0 AGCTACGGTTTATATGGGAGTCG--GAAGAGTTACGTCGTGC-TATGGAGCCTGTGGATT 297 consensus_3210#1 -------------ATGGGAATCCACGAAGAATTAC-TCGTGCCTATGGAACCTGTGGATT 46 ****** ** ***** **** ****** ****** ********** consensus_3210#0 TGATCAGGAGAGTGAAGGAAATCGAACA-AGAAGCTTATGGTGAGCA-TGGCA-TGATGA 354 consensus_3210#1 TGATCCAGGAGATGAAGGAAATTGAACACGGAATCTTATGGTGACCACTGGCACTGATGA 106 ***** * ********** ***** *** ********** ** ***** ****** consensus_3210#0 CACAAGAAGATGCCAAGCAGGCAGCTGCTGTTGATGCATCAAAAAGGTTGCAAGATTTAA 414 consensus_3210#1 CACAAGAAGATGCCACACAGACAGCTGCT-TTGATGCATCCAAAAG-CTGCAAGATTTAA 164 *************** *** ******** ********** ***** ************ consensus_3210#0 GGGCAGGGAATGATGGTAGCAGCCAAAAAGCTCTTGAGGAATGGCGCA-AACGGAAGATG 473 consensus_3210#1 GGGCAGGGAATGATGGTACCAGCCCAAAAGCTCTTGAGGAATGGCGCACAACGGAAGATG 224 ****************** ***** *********************** *********** consensus_3210#0 GAGCGTGCGAGGCAGCGGGCGATTGAAAAGAACGGGACCTCATCAGCTGCGAAAACGCGA 533 consensus_3210#1 GAGCGTGCGAGGCAGCGGGCGATTGAAAAGAACGGGACCTCATCAGCTGCGAAAACGCGA 284 ************************************************************ consensus_3210#0 TGAATTGGGAGGTAGCTATTGCTGCACATCACCTTTGGGGGTGTCCTGGAGCTGCTGCTG 593 consensus_3210#1 TGAATTGGGAGGTAGCTATTGCTGCACATCACCTTTGGGGGTGTCCTGGAGCTGCTGCTG 344 ************************************************************ consensus_3210#0 TACGTGGGGTGGTCTCCTGGTGTCTGTAAAATTTCTTGTACATCGTGTTGTTGTTGTTGT 653 consensus_3210#1 TACGTATGGTGGTCTCCTGGTGTCTGTAAAATTTCTTGTACATCGTGTTGTTGTTGTTGT 404 ***** ***************************************************** consensus_3210#0 C---TAGATCCATTTTTTATTCTTCTGTTTCTCTAGTAAAAGAC-CAACTGGGTAGAAAA 709 consensus_3210#1 TGTTTAGATCCATTTTATTTTCTTCAATTTCTCAAGTAAAAGACACAACCGGGTAGAAAA 464 ************ * ****** ****** ********** **** ********** consensus_3210#0 A--AAAATTAAAGCTCATC--------------- 726 consensus_3210#1 ATTAAAGCTCATATTTTTCGACCTCAAAAAAAAA 498 * *** * * * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||