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Oryza sativa
cluster # 3214 cluster # 3214       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3214#0 length = 1153 sequences # 2  

consensusID : consensus_3214#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1153
fasta sequence
                              [CAGTCCAGTCCAGGGGATGATTCTGATACATCGATACAA-CAAGCTAGCATGGAGATGGACATCGGCGAGGGCGAGAGCTGCTGCGGCAGGCGAAAGCAGCAGCAGCAGCAGAATATTAGCAGCAGCAAGTCACGCAAGTGCTGCCCGCTGCGGCGGTCGCGGAAGGGGTGCATGAAGGGGAAGGGCGGGCCGGAGAACCAGCGTTGCCCCTTCCGCGGCGTCCGGCAGCGCACCTGGGGCAAGTGGGTGGCCGAGATCCGCGAGCCCAACCGCGGCGCCCGCCTCTGGCTCGGCACCTTCAACACCGCCCTCGACGCCGCCCGCGCCTACGACTCCGCCGCCAGGGCCCTCTACGGCGACTGCGCCCGCCTCAACCTACTCCTCGCCGCCGCCACCGCCGGTGCTCCTCCTGCTGCTGCTACCCCTTCCGTGGCCACGCCCTGCAGCACCAACGACGACTCCAACAACTCGTCTTCCACGACGCATCAGCAGCAGCTGACGACGATGCTGCAGCTGGACGACGACAACTACACGCTGCAGCCGTCGTCGTCAGATCAAGAGGACTTCGAGACGTACGTCACGCGGCTACCCAAGGCGGAGGACTTTGGGCTGGAGGGCTTCCAGGAGGTTCCACTCGACGTCCTCGACGAAGCCGGCGGTGGCATCAGCATCTGGGACCTCTCCATCTGCCCCGCCGATTTCATGGCCACCGCCGCCACCACCACCGCCAAATCATCTTA-----ATATTCATAATAATAATAATAATAATAATAATAATAATAATTAAAGACGACGACGACCTACCTACATCATATATCTATCTATCTAGCGCCCGCGCGCGGCTGCCTATATAGATATATGATGATCAGCTCCATCTCTCTCTAAAGTCTAAACATGCATGCTTGTCGTCGTCGTCGTCGTCATCATCGTCGTTACTTGTATATATACTCCACTACTTAGTACTAACTACTATAATTAGCTCTAGCGTACTGCTACTTTTATACGGCATGCAAGCGGCCGACATCCTGATCGATCAACTGTGAGCATGCTGTATGCATCGATCGATCTTAATTAGTTAGGCGAGCTGTGCTTGCTTATCGATCTTAATTATATCATCCGATCCCATATTATATAAGTAATACTAATTAATACTATA]

[+] EMBL AY339375             [CAGTCCAGTCCAGGGGATGATTCTGATACATCGATACAA CAAGCTAGCATGGAGATGGACATCGGCGAGGGCGAGAGCTGCTGCGGCAGGCGAAAGCAGCAGCAGCAGCAGAATATTAGCAGCAGCAAGTCACGCAAGTGCTGCCCGCTGCGGCGGTCGCGGAAGGGGTGCATGAAGGGGAAGGGCGGGCCGGAGAACCAGCGTTGCCCCTTCCGCGGCGTCCGGCAGCGCACCTGGGGCAAGTGGGTGGCCGAGATCCGCGAGCCCAACCGCGGCGCCCGCCTCTGGCTCGGCACCTTCAACACCGCCCTCGACGCCGCCCGCGCCTACGACTCCGCCGCCAGGGCCCTCTACGGCGACTGCGCCCGCCTCAACCTACTCCTCGCCGCCGCCACCGCCGGTGCTCCTCCTGCTGCTGCTACCCCTTCCGTGGCCACGCCCTGCAGCACCAACGACGACTCCAACAACTCGTCTTCCACGACGCATCAGCAGCAGCTGACGACGATGCTGCAGCTGGACGACGACAACTACACGCTGCAGCCGTCGTCGTCAGATCAAGAGGACTTCGAGACGTACGTCACGCGGCTACCCAAGGCGGAGGACTTTGGGCTGGAGGGCTTCCAGGAGGTTCCACTCGACGTCCTCGACGAAGCCGGCGGTGGCATCAGCATCTGGGACCTCTCCATCTGCCCCGCCGATTTCATGGCCACCGCCGCCACCACCACCGCCAAATCATCTTA     ATATTCATAATAATAATAATAATAATAATAATAATAATAATTAAA                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK108143             [                           ACATCGATACAATCAAGCTAGCATGGAGATGGACATCGGCGAGGGCGAGAGCTGCTGCGGCAGGCGAAAGCAGCAGCAGCAGCAGAATATTAGCAGCAGCAAGTCACGCAAGTGCTGCCCGCTGCGGCGGTCGCGGAAGGGGTGCATGAAGGGGAAGGGCGGGCCGGAGAACCAGCGTTGCCCCTTCCGCGGCGTCCGGCAGCGCACCTGGGGCAAGTGGGTGGCCGAGATCCGCGAGCCCAACCGCGGCGCCCGCCTCTGGCTCGGCACCTTCAACACCGCCCTCGACGCCGCCCGCGCCTACGACTCCGCCGCCAGGGCCCTCTACGGCGACTGCGCCCGCCTCAACCTACTCCTCGCCGCCGCCACCGCCGGTGCTCCTCCTGCTGCTGCTACCCCTTCCGTGGCCACGCCCTGCAGCACCAACGACGACTCCAACAACTCGTCTTCCACGACGCATCAGCAGCAGCTGACGACGATGCTGCAGCTGGACGACGACAACTACACGCTGCAGCCGTCGTCGTCAGATCAAGAGGACTTCGAGACGTACGTCACGCGGCTACCCAAGGCGGAGGACTTTGGGCTGGAGGGCTTCCAGGAGGTTCCACTCGACGTCCTCGACGAAGCCGGCGGTGGCATCAGCATCTGGGACCTCTCCATCTGCCCCGCCGATTTCATGGCCACCGCCGCCACCACCACCGCCAAATCATCTTAATTATATATTCATAATAATAATAATAATAATAATAATAATAATAATTAACGACGACGACGACCTACCTACATCATATATCTATCTATCTAGCGCCCGCGCGCGGCTGCCTATATAGATATATGATGATCAGCTCCATCTCTCTCTAAAGTCTAAACATGCATGCTTGTCGTCGTCGTCGTCGTCATCATCGTCGTTACTTGTATATATACTCCACTACTTAGTACTAACTACTATAATTAGCTCTAGCGTACTGCTACTTTTATACGGCATGCAAGCGGCCGACATCCTGATCGATCAACTGTGAGCATGCTGTATGCATCGATCGATCTTAATTAGTTAGGCGAGCTGTGCTTGCTTATCGATCTTAATTATATCATCCGATCCCATATTATATAAGTAATACTAATTAATACTATA]


>consensus_3214#0 CAGTCCAGTCCAGGGGATGATTCTGATACATCGATACAACAAGCTAGCATGGAGATGGAC ATCGGCGAGGGCGAGAGCTGCTGCGGCAGGCGAAAGCAGCAGCAGCAGCAGAATATTAGC AGCAGCAAGTCACGCAAGTGCTGCCCGCTGCGGCGGTCGCGGAAGGGGTGCATGAAGGGG AAGGGCGGGCCGGAGAACCAGCGTTGCCCCTTCCGCGGCGTCCGGCAGCGCACCTGGGGC AAGTGGGTGGCCGAGATCCGCGAGCCCAACCGCGGCGCCCGCCTCTGGCTCGGCACCTTC AACACCGCCCTCGACGCCGCCCGCGCCTACGACTCCGCCGCCAGGGCCCTCTACGGCGAC TGCGCCCGCCTCAACCTACTCCTCGCCGCCGCCACCGCCGGTGCTCCTCCTGCTGCTGCT ACCCCTTCCGTGGCCACGCCCTGCAGCACCAACGACGACTCCAACAACTCGTCTTCCACG ACGCATCAGCAGCAGCTGACGACGATGCTGCAGCTGGACGACGACAACTACACGCTGCAG CCGTCGTCGTCAGATCAAGAGGACTTCGAGACGTACGTCACGCGGCTACCCAAGGCGGAG GACTTTGGGCTGGAGGGCTTCCAGGAGGTTCCACTCGACGTCCTCGACGAAGCCGGCGGT GGCATCAGCATCTGGGACCTCTCCATCTGCCCCGCCGATTTCATGGCCACCGCCGCCACC ACCACCGCCAAATCATCTTAATATTCATAATAATAATAATAATAATAATAATAATAATAA TTAAAGACGACGACGACCTACCTACATCATATATCTATCTATCTAGCGCCCGCGCGCGGC TGCCTATATAGATATATGATGATCAGCTCCATCTCTCTCTAAAGTCTAAACATGCATGCT TGTCGTCGTCGTCGTCGTCATCATCGTCGTTACTTGTATATATACTCCACTACTTAGTAC TAACTACTATAATTAGCTCTAGCGTACTGCTACTTTTATACGGCATGCAAGCGGCCGACA TCCTGATCGATCAACTGTGAGCATGCTGTATGCATCGATCGATCTTAATTAGTTAGGCGA GCTGTGCTTGCTTATCGATCTTAATTATATCATCCGATCCCATATTATATAAGTAATACT AATTAATACTATA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)