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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3216#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1854 fasta sequence
[TTGACGGCATCTCATCCAGGAGCCCAGGTCGGCGCCGCCGCACACGCGTGGCGGCCTCGCCGGCGACTCGGCTGCTCAGAGCGGCGCGAAGAAAGGCCGCGCTGGAGTCTGCAGCCGCTGCGTGTGGCAGAGTAGAGACCAGCCAGGGAGAGCGCAGCTGTCAGCAACCTATACCAGCCAGTGAGCTTGCTCGCGCCGTTCGCCGGGGCGGGGGAAGAGAACCATCTGGCGACAAAGCACAGGAAGCATGTCACTGGTTAACCGGCCGCTCCCTGCACTGTATGGAATTTGCACGGCCTCGGCGAAGACCAGAGCTTGGTGGCTCTGCAGAGATGGCAATCTCCCATCAACAAGTCGAATTTCTTGCACAGAGCCATCGAATGGGGGTTCTGTCATGGAGTTGGAGGTAATGGACCGCAATGAGCAGACATACCATGAGAATTCTTCTGCTTCTGAGGATGAGGACGATGATGAGGAAGAGGCTGTAGAGTGGAGCAAAGATGAGCTTGATGCCATCTCGGCACTCTTTGACCGGCCGATGCGCCAGAAGCCACCAAAGCCGCCAAACCCGGTGAGGCAGCGACCTCTCCCGCTGCCACTGCCTCACAAGACACGACTGCCCAATGCTCCTGCACCAAAGCAGCATATCAGGCTGGCAGCAAGGGCTGCACTTTCTTCACGCTCTTCATTCAGTGACCAGGTGTGCAAGAACCCGGAGGTCCTCATTGGGATTGCCCGGGAGATTGCAGCGCTGCCACCGGAGTCTGACGTGTCCATTGTGCTCGATCGGTGGGTTCGGTTCCTCCGGAAAGGATCCTTGTCAATGACCATTCGGGAGCTTGGGCACATGGGGCTCCCAGAGAGGGCATTGCAGACACTTTGCTAGGCTCAGAGGCAGACTGTCGTGCCACTCTTCCCCGACGACCGGATTCTCGCTTCGACAATTGAGGTCTTGGCACGCTTCGACCAGCTGAAGATGGAGGATGCGCTAGAGCAGTGCGTCCCTTCAGCGAGCCGTGCTGTTCTTGAAGCCATGGTCAGTGGGTTCATCAGGGCAGGTAAAGTAGGCCTTGCCCGAAAACTCCTCGAGTTCGCCACGATCAACAAGAGGACACTGAGCCCGAGCGTCCACGTGAAGCTGATGCTGGAGGCCGTCCGTACGCCTGAGGGCTACGGGCTCGCCGCGGCGCTGCTGGACGAGCTCGGCGAGAGGCCGGAGCTGCACGTTCGGCAGCAGGACTGCACGGCCGTGATGAAGGTGTGCGTGAAGCTCCGGCGGTACGCCGCCGTGGAGAGCCTGTTCGGCTGGTTCAGGGACACCGGCGGGAGGCCCACGGTGGTGATGTACACGGCGGTGATCCACAGCCGGTGCCGCGACGGGCGGCACCGGGAGGCGCTGTCCCTGGCGTGGGAGATGGAGCGGCACGCCGGCGGCCTCCTCGACCTGCCGGCGTACCGGGTGCTGGTGAAGCTGTGCGTGGCGTTGCGCGACCACGAGAGGGGCGTCCGGTACTTGGCGAGGATGAAGGACGCCGGGTTCGTCCCGACCGGCGACATGTACGGCGGCCTGATCGGAGGCTACGCGGCGGAGGGGAGGATGGGCAGGTGCCGGAGGCTGATCAGGGAGGCGGAGTTGGCCGGCGTGAAGCTGGAGAGGAGGCTGCTTTCGCGCTTGTCTGAGATGGGGGTTGAGCATTCTCAGCTCTGAAAGAAAGAAACTGATCTTGCTGTTGGCATCTGACTAGCATGGACATTGCACAGAAATTGAACTGTAAAATTAGGCTCTGCGTAATTGCCTTTAACCTGTAGTAACAGAACATTACATTATGAATATATTTGTTTTGTTGTTGGCTT]
[+] EMBL AK068524 [TTGACGGCATCTCATCCAGGAGCCCAGGTCGGCGCCGCCGCACACGCGTGGCGGCCTCGCCGGCGACTCGGCTGCTCAGAGCGGCGCGAAGAAAGGCCGCGCTGGAGTCTGCAGCCGCTGCGTGTGGCAGAGTAGAGACCAGCCAGGGAGAGCGCAGCTGTCAGCAACCTATACCAGCCAGTGAGCTTGCTCGCGCCGTTCGCCGGGGCGGGGGAAGAGAACCATCTGGCGACAAAGCACAGGAAGCATGTCACTGGTTAACCGGCCGCTCCCTGCACTGTATGGAATTTGCACGGCCTCGGCGAAGACCAGAGCTTGGTGGCTCTGCAGAGATGGCAATCTCCCATCAACAAGTCGAATTTCTTGCACAGAGCCATCGAATGGGGGTTCTGTCATGGAGTTGGAGGTAATGGACCGCAATGAGCAGACATACCATGAGAATTCTTCTGCTTCTGAGGATGAGGACGATGATGAGGAAGAGGCTGTAGAGTGGAGCAAAGATGAGCTTGATGCCATCTCGGCACTCTTTGACCGGCCGATGCGCCAGAAGCCACCAAAGCCGCCAAACCCGGTGAGGCAGCGACCTCTCCCGCTGCCACTGCCTCACAAGACACGACTGCCCAATGCTCCTGCACCAAAGCAGCATATCAGGCTGGCAGCAAGGGCTGCACTTTCTTCACGCTCTTCATTCAGTGACCAGGTGTGCAAGAACCCGGAGGTCCTCATTGGGATTGCCCGGGAGATTGCAGCGCTGCCACCGGAGTCTGACGTGTCCATTGTGCTCGATCGGTGGGTTCGGTTCCTCCGGAAAGGATCCTTGTCAATGACCATTCGGGAGCTTGGGCACATGGGGCTCCCAGAGAGGGCATTGCAGACACTTTGCTAGGCTCAGAGGCAGACTGTCGTGCCACTCTTCCCCGACGACCGGATTCTCGCTTCGACAATTGAGGTCTTGGCACGCTTCGACCAGCTGAAGATGGAGGATGCGCTAGAGCAGTGCGTCCCTTCAGCGAGCCGTGCTGTTCTTGAAGCCATGGTCAGTGGGTTCATCAGGGCAGGTAAAGTAGGCCTTGCCCGAAAACTCCTCGAGTTCGCCACGATCAACAAGAGGACACTGAGCCCGAGCGTCCACGTGAAGCTGATGCTGGAGGCCGTCCGTACGCCTGAGGGCTACGGGCTCGCCGCGGCGCTGCTGGACGAGCTCGGCGAGAGGCCGGAGCTGCACGTTCGGCAGCAGGACTGCACGGCCGTGATGAAGGTGTGCGTGAAGCTCCGGCGGTACGCCGCCGTGGAGAGCCTGTTCGGCTGGTTCAGGGACACCGGCGGGAGGCCCACGGTGGTGATGTACACGGCGGTGATCCACAGCCGGTGCCGCGACGGGCGGCACCGGGAGGCGCTGTCCCTGGCGTGGGAGATGGAGCGGCACGCCGGCGGCCTCCTCGACCTGCCGGCGTACCGGGTGCTGGTGAAGCTGTGCGTGGCGTTGCGCGACCACGAGAGGGGCGTCCGGTACTTGGCGAGGATGAAGGACGCCGGGTTCGTCCCGACCGGCGACATGTACGGCGGCCTGATCGGAGGCTACGCGGCGGAGGGGAGGATGGGCAGGTGCCGGAGGCTGATCAGGGAGGCGGAGTTGGCCGGCGTGAAGCTGGAGAGGAGGCTGCTTTCGCGCTTGTCTGAGATGGGGGTTGAGCATTCTCAGCTCTGAAAGAAAGAAACTGATCTTGCTGTTGGCATCTGACTAGCATGGACATTGCACAGAAATTGAACTGTAAAATTAGGCTCTGCGTAATTGCCTTTAACCTGTAGTAACAGAACATTACATTATGAATATATTTGTTTTGTTGTTGGCTT]
consensusID : consensus_3216#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 773 fasta sequence
[TGCTTATTATACATGCTGACTTGCANCCTTTTGCTTTATCATGCTACTATCTGGAATCAATATTGTTCTAAGTACCANCATTTTGCCTAATCTTAAAACAGGAAGCATGTCACTGGTTAACCGGCCGCTCCCTGCACTGTATGGAATTTGCACGGCCTCGGCGTAGACCAGAGCTTGGTGGCTCTGCAGAGATGGCAATCTCCCATCAACAAGTCGAATTTCTTGCACAGAGCCATCGAATGGGGGTTCTGCCATGGAGTTGGAGGTAATGGACCGCAATGAGCAGACATACCATGAGAATTCTTCTGCTTCTGAGGATGAGGACGATGATGAGGAAGAGGCTGTAGAGTGGAGCAAAGATGAGCTTGATGCCATCTCGGCACTCTTTGACCGGCCGATGCGCCAGAAGCCACCAAAGCCGCCAAACCCGGTGAGGCAGCGACCTCTCCCGCTGCCACTGCCTCACAAGACACGACTGCCCAATGCTCCTGCACCAAAGCAGCATATCAGGCTGGCAGCAAGGGCTGCACTTTCTTCACGCTCTTCATTCAGTGACCAGGTGTGCAAGAACCCGGAGGTCCTCATTGGGATTGCCCGGGAGATTGCAGCGCTGCCACCGGAGTCNTGACGTGTCCATTGTGCTCGATCGGTGGGTTCGGTTCCTCCGGAAAGGATCCTTGTCAATGACCATCCGGGAGCTTGGGCACATGGGGCTCCCAGAGAGGGCATTGCAGACACTTTGCTGGGCTCAGAGGCAGACTGTCGTGCCACTC]
[-] EMBL CA766092 [TGCTTATTATACATGCTGACTTGCANCCTTTTGCTTTATCATGCTACTATCTGGAATCAATATTGTTCTAAGTACCANCATTTTGCCTAATCTTAAAACAGGAAGCATGTCACTGGTTAACCGGCCGCTCCCTGCACTGTATGGAATTTGCACGGCCTCGGCGTAGACCAGAGCTTGGTGGCTCTGCAGAGATGGCAATCTCCCATCAACAAGTCGAATTTCTTGCACAGAGCCATCGAATGGGGGTTCTGCCATGGAGTTGGAGGTAATGGACCGCAATGAGCAGACATACCATGAGAATTCTTCTGCTTCTGAGGATGAGGACGATGATGAGGAAGAGGCTGTAGAGTGGAGCAAAGATGAGCTTGATGCCATCTCGGCACTCTTTGACCGGCCGATGCGCCAGAAGCCACCAAAGCCGCCAAACCCGGTGAGGCAGCGACCTCTCCCGCTGCCACTGCCTCACAAGACACGACTGCCCAATGCTCCTGCACCAAAGCAGCATATCAGGCTGGCAGCAAGGGCTGCACTTTCTTCACGCTCTTCATTCAGTGACCAGGTGTGCAAGAACCCGGAGGTCCTCATTGGGATTGCCCGGGAGATTGCAGCGCTGCCACCGGAGTCNTGACGTGTCCATTGTGCTCGATCGGTGGGTTCGGTTCCTCCGGAAAGGATCCTTGTCAATGACCATCCGGGAGCTTGGGCACATGGGGCTCCCAGAGAGGGCATTGCAGACACTTTGCTGGGCTCAGAGGCAGACTGTCGTGCCACTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3216#0 TTGACGGCATCTCATCCAGGAGCCCAGGTCGGCGCCGCCGCACACGCGTGGCGGCCTCGC 60
consensus_3216#1 ------------------------------------------------------------
consensus_3216#0 CGGCGACTCGGCTGCTCAGAGCGGCGCGAAGAAAGGCCGCGCTGGAGTCTGCAGCCGCTG 120
consensus_3216#1 ------------------------------------------------------------
consensus_3216#0 CGTGTGGCAGAGTAGAGACCAGCCAGGGAGAGC-GCAGCTGTCAGCAACCTATACCAGCC 179
consensus_3216#1 ------------TGCTTATTATACATGCTGACTTGCANCCTTTTGC----TTTATCATGC 44
* * * ** * ** *** * * ** * ** ** *
consensus_3216#0 AGTGAGCTTGCTCGCGCCGTTCGCCGGGGCGGGGGAAGAGAACCATCTGGCGACAAAGCA 239
consensus_3216#1 TACTATCTGGAAT-CAATATTGTTCTAAGTACCANCA---TTTTGCCTAATCTTAAA--A 98
* ** * * ** * * * ** *** *
consensus_3216#0 CAGGAAGCATGTCACTGGTTAACCGGCCGCTCCCTGCACTGTATGGAATTTGCACGGCCT 299
consensus_3216#1 CAGGAAGCATGTCACTGGTTAACCGGCCGCTCCCTGCACTGTATGGAATTTGCACGGCCT 158
************************************************************
consensus_3216#0 CGGCGAAGACCAGAGCTTGGTGGCTCTGCAGAGATGGCAATCTCCCATCAACAAGTCGAA 359
consensus_3216#1 CGGCGTAGACCAGAGCTTGGTGGCTCTGCAGAGATGGCAATCTCCCATCAACAAGTCGAA 218
***** ******************************************************
consensus_3216#0 TTTCTTGCACAGAGCCATCGAATGGGGGTTCTGTCATGGAGTTGGAGGTAATGGACCGCA 419
consensus_3216#1 TTTCTTGCACAGAGCCATCGAATGGGGGTTCTGCCATGGAGTTGGAGGTAATGGACCGCA 278
********************************* **************************
consensus_3216#0 ATGAGCAGACATACCATGAGAATTCTTCTGCTTCTGAGGATGAGGACGATGATGAGGAAG 479
consensus_3216#1 ATGAGCAGACATACCATGAGAATTCTTCTGCTTCTGAGGATGAGGACGATGATGAGGAAG 338
************************************************************
consensus_3216#0 AGGCTGTAGAGTGGAGCAAAGATGAGCTTGATGCCATCTCGGCACTCTTTGACCGGCCGA 539
consensus_3216#1 AGGCTGTAGAGTGGAGCAAAGATGAGCTTGATGCCATCTCGGCACTCTTTGACCGGCCGA 398
************************************************************
consensus_3216#0 TGCGCCAGAAGCCACCAAAGCCGCCAAACCCGGTGAGGCAGCGACCTCTCCCGCTGCCAC 599
consensus_3216#1 TGCGCCAGAAGCCACCAAAGCCGCCAAACCCGGTGAGGCAGCGACCTCTCCCGCTGCCAC 458
************************************************************
consensus_3216#0 TGCCTCACAAGACACGACTGCCCAATGCTCCTGCACCAAAGCAGCATATCAGGCTGGCAG 659
consensus_3216#1 TGCCTCACAAGACACGACTGCCCAATGCTCCTGCACCAAAGCAGCATATCAGGCTGGCAG 518
************************************************************
consensus_3216#0 CAAGGGCTGCACTTTCTTCACGCTCTTCATTCAGTGACCAGGTGTGCAAGAACCCGGAGG 719
consensus_3216#1 CAAGGGCTGCACTTTCTTCACGCTCTTCATTCAGTGACCAGGTGTGCAAGAACCCGGAGG 578
************************************************************
consensus_3216#0 TCCTCATTGGGATTGCCCGGGAGATTGCAGCGCTGCCACCGGAGTCT-GACGTGTCCATT 778
consensus_3216#1 TCCTCATTGGGATTGCCCGGGAGATTGCAGCGCTGCCACCGGAGTCNTGACGTGTCCATT 638
********************************************** ************
consensus_3216#0 GTGCTCGATCGGTGGGTTCGGTTCCTCCGGAAAGGATCCTTGTCAATGACCATTCGGGAG 838
consensus_3216#1 GTGCTCGATCGGTGGGTTCGGTTCCTCCGGAAAGGATCCTTGTCAATGACCATCCGGGAG 698
***************************************************** ******
consensus_3216#0 CTTGGGCACATGGGGCTCCCAGAGAGGGCATTGCAGACACTTTGCTAGGCTCAGAGGCAG 898
consensus_3216#1 CTTGGGCACATGGGGCTCCCAGAGAGGGCATTGCAGACACTTTGCTGGGCTCAGAGGCAG 758
********************************************** *************
consensus_3216#0 ACTGTCGTGCCACTCTTCCCCGACGACCGGATTCTCGCTTCGACAATTGAGGTCTTGGCA 958
consensus_3216#1 ACTGTCGTGCCACTC--------------------------------------------- 773
***************
consensus_3216#0 CGCTTCGACCAGCTGAAGATGGAGGATGCGCTAGAGCAGTGCGTCCCTTCAGCGAGCCGT 1018
consensus_3216#1 ------------------------------------------------------------
consensus_3216#0 GCTGTTCTTGAAGCCATGGTCAGTGGGTTCATCAGGGCAGGTAAAGTAGGCCTTGCCCGA 1078
consensus_3216#1 ------------------------------------------------------------
consensus_3216#0 AAACTCCTCGAGTTCGCCACGATCAACAAGAGGACACTGAGCCCGAGCGTCCACGTGAAG 1138
consensus_3216#1 ------------------------------------------------------------
consensus_3216#0 CTGATGCTGGAGGCCGTCCGTACGCCTGAGGGCTACGGGCTCGCCGCGGCGCTGCTGGAC 1198
consensus_3216#1 ------------------------------------------------------------
consensus_3216#0 GAGCTCGGCGAGAGGCCGGAGCTGCACGTTCGGCAGCAGGACTGCACGGCCGTGATGAAG 1258
consensus_3216#1 ------------------------------------------------------------
consensus_3216#0 GTGTGCGTGAAGCTCCGGCGGTACGCCGCCGTGGAGAGCCTGTTCGGCTGGTTCAGGGAC 1318
consensus_3216#1 ------------------------------------------------------------
consensus_3216#0 ACCGGCGGGAGGCCCACGGTGGTGATGTACACGGCGGTGATCCACAGCCGGTGCCGCGAC 1378
consensus_3216#1 ------------------------------------------------------------
consensus_3216#0 GGGCGGCACCGGGAGGCGCTGTCCCTGGCGTGGGAGATGGAGCGGCACGCCGGCGGCCTC 1438
consensus_3216#1 ------------------------------------------------------------
consensus_3216#0 CTCGACCTGCCGGCGTACCGGGTGCTGGTGAAGCTGTGCGTGGCGTTGCGCGACCACGAG 1498
consensus_3216#1 ------------------------------------------------------------
consensus_3216#0 AGGGGCGTCCGGTACTTGGCGAGGATGAAGGACGCCGGGTTCGTCCCGACCGGCGACATG 1558
consensus_3216#1 ------------------------------------------------------------
consensus_3216#0 TACGGCGGCCTGATCGGAGGCTACGCGGCGGAGGGGAGGATGGGCAGGTGCCGGAGGCTG 1618
consensus_3216#1 ------------------------------------------------------------
consensus_3216#0 ATCAGGGAGGCGGAGTTGGCCGGCGTGAAGCTGGAGAGGAGGCTGCTTTCGCGCTTGTCT 1678
consensus_3216#1 ------------------------------------------------------------
consensus_3216#0 GAGATGGGGGTTGAGCATTCTCAGCTCTGAAAGAAAGAAACTGATCTTGCTGTTGGCATC 1738
consensus_3216#1 ------------------------------------------------------------
consensus_3216#0 TGACTAGCATGGACATTGCACAGAAATTGAACTGTAAAATTAGGCTCTGCGTAATTGCCT 1798
consensus_3216#1 ------------------------------------------------------------
consensus_3216#0 TTAACCTGTAGTAACAGAACATTACATTATGAATATATTTGTTTTGTTGTTGGCTT 1854
consensus_3216#1 --------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||