These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3219#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1540 fasta sequence [GATTTTACTTGCGTCAGCTCCGGCTACCGTGGTCAATGTGCACAATATTTCATTTGGTCCTCACCTCAGCCCTGTAGGCATGCAGGCAGCAGGCCTTCAGTTACTGCATCCCTTCGGAATCGTTAAATGAACAGTATTCAAGCAGCCGCAGGAGTATGTGTCCGGTGTCCCACTGACACCGATAAGCAGCGACAACGTCGACACTCAACATATCCCATCCCTTCCTTATCCCAACGACCTGCACGCTGCATTTTCATCACTAGCATCAGTGTATTCAAACCTGCAGCTTACACTGAAGAGTGAAGACTGAACTCCACAGATATGTTGGCCGAGGGAAGGCAAGTCTACTTGCCGCCGCCGCCGCCGTCCAAGCTTCCTCGTCTCTCCGGCACCGATCCAACCGACGGCGTGGTGACGATGGCAGCGCCGTCGCCGCTGGTTCTTGGGCTGGGTCTCGGTCTGGGCGGCAGCGGCAGCGACAGCAGTGGGAGCGACGCGGAAGCGTCTGCGGCCACCGTGCGGGAGGCGCGGCCGCCGTCGGCGCTGACGTTCATGCAGCGGCAGGAGCTGGAGCAGCAGGTGCTCATCTACCGCTACTTCGCCGCCGGCGCGCCTGTGCCGGTTCACCTCGTGCTGCCCATATGGAAGAGCATCGCCGCCGCCTCCTCGTTCGGCCCGCAAAGCTTTCCCTCCCTGACGGGCCTGGGGAGCCTGTGCTTCGACTACAGGAGCAGCATGGAGCCGGAGCCGGGGCGGTGCCGGCGCACGGACGGCAAGAAGTGGCGGTGCTCGCGCGACGTGGTGCCGGGGCACAAGTATTGCGAGCGGCACGTCCACCGTGGCCACGGCCGTTCAAGAAAGCCTATGGAAGCCTCTGCAGCAGTCGCTCCCACATATCTCCCGGTCCGGCCGGCACTCCACACCGTCGCCACCCTCGCCACCAGCGCGCCATCGCTGTCGCACCTCGGTTTCTCCTCCGCCAGCAAAGTGCTCCTCGCCCACACCACCACCGGCACCACGCGCGCTACTTGATCTCATTGTTATCTCCGAGGATTATGCCGGTGCACTGTCTGTAACCTTTTTCTCGTAATCACGCCTCGGTTTGTTCCCAATGCATCGTCACGCATTGCTAGTTTGACAGTTTGCTACCGCTGCCTCTGTGTGTGCCTGTGCGTGTGGCAGCCGAGGTGTTTTTGTTTGGTTGGGTGGTGGGAGGCGCGCCCCGGTGCGGTGGTGGGCGTGGCCCCCGGCTACCTAGTGCTGGTTCCTGCGTGTGCCTGTCGAACCTGTGGAGCGTGGTCGGAAGTACGGTACGCACTGTCCGGTCTCATATGCCGGGGCAGAGGGGTTCGGTCCAGTGTGGTGCAGGCGTGCGGATTGGGATCACATGCAGTGGCTACTGCAACTTATGCAGTCCTAAAGACACCATTGAATTATAAATTAACGTCCTAGATCTTTCCTTGATACTGTTCACAAATAACAGTGAAAAGTTCCTTCCTGTAGCAGGTACTATAGCAATTACTGTTTAAAATAACTGTAG] [+] EMBL AK110934 [GATTTTACTTGCGTCAGCTCCGGCTACCGTGGTCAATGTGCACAATATTTCATTTGGTCCTCACCTCAGCCCTGTAGGCATGCAGGCAGCAGGCCTTCAGTTACTGCATCCCTTCGGAATCGTTAAATGAACAGTATTCAAGCAGCCGCAGGAGTATGTGTCCGGTGTCCCACTGACACCGATAAGCAGCGACAACGTCGACACTCAACATATCCCATCCCTTCCTTATCCCAACGACCTGCACGCTGCATTTTCATCACTAGCATCAGTGTATTCAAACCTGCAGCTTACACTGAAGAGTGAAGACTGAACTCCACAGATATGTTGGCCGAGGGAAGGCAAGTCTACTTGCCGCCGCCGCCGCCGTCCAAGCTTCCTCGTCTCTCCGGCACCGATCCAACCGACGGCGTGGTGACGATGGCAGCGCCGTCGCCGCTGGTTCTTGGGCTGGGTCTCGGTCTGGGCGGCAGCGGCAGCGACAGCAGTGGGAGCGACGCGGAAGCGTCTGCGGCCACCGTGCGGGAGGCGCGGCCGCCGTCGGCGCTGACGTTCATGCAGCGGCAGGAGCTGGAGCAGCAGGTGCTCATCTACCGCTACTTCGCCGCCGGCGCGCCTGTGCCGGTTCACCTCGTGCTGCCCATATGGAAGAGCATCGCCGCCGCCTCCTCGTTCGGCCCGCAAAGCTTTCCCTCCCTGACGGGCCTGGGGAGCCTGTGCTTCGACTACAGGAGCAGCATGGAGCCGGAGCCGGGGCGGTGCCGGCGCACGGACGGCAAGAAGTGGCGGTGCTCGCGCGACGTGGTGCCGGGGCACAAGTATTGCGAGCGGCACGTCCACCGTGGCCACGGCCGTTCAAGAAAGCCTATGGAAGCCTCTGCAGCAGTCGCTCCCACATATCTCCCGGTCCGGCCGGCACTCCACACCGTCGCCACCCTCGCCACCAGCGCGCCATCGCTGTCGCACCTCGGTTTCTCCTCCGCCAGCAAAGTGCTCCTCGCCCACACCACCACCGGCACCACGCGCGCTACTTGATCTCATTGTTATCTCCGAGGATTATGCCGGTGCACTGTCTGTAACCTTTTTCTCGTAATCACGCCTCGGTTTGTTCCCAATGCATCGTCACGCATTGCTAGTTTGACAGTTTGCTACCGCTGCCTCTGTGTGTGCCTGTGCGTGTGGCAGCCGAGGTGTTTTTGTTTGGTTGGGTGGTGGGAGGCGCGCCCCGGTGCGGTGGTGGGCGTGGCCCCCGGCTACCTAGTGCTGGTTCCTGCGTGTGCCTGTCGAACCTGTGGAGCGTGGTCGGAAGTACGGTACGCACTGTCCGGTCTCATATGCCGGGGCAGAGGGGTTCGGTCCAGTGTGGTGCAGGCGTGCGGATTGGGATCACATGCAGTGGCTACTGCAACTTATGCAGTCCTAAAGACACCATTGAATTATAAATTAACGTCCTAGATCTTTCCTTGATACTGTTCACAAATAACAGTGAAAAGTTCCTTCCTGTAGCAGGTACTATAGCAATTACTGTTTAAAATAACTGTAG] consensusID : consensus_3219#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 875 fasta sequence [CTGCCCCCCGTCTTCTTTCTTCATTCCTCTTCCCACCAAGAACCCCAAACCTTACCTCCATTGAGTTCGAAACCGAGGAGCGAGGAGCTACAAGCCGAGTTGTCAGAATGGATGAGGAGAAGGAAGCCGACTCGCCGCAGCCACCGTCCAAGCTGCCTCGCCTCTCCGGCGCTGACCCGAATGCCGGAGTGGTGACCATGGCAGCACCCCCGCCGCCGGTGGGTCTTGGGCTGGGGCTTGGACTCGGCGGCGACAGCCGCGGCGAGCGTGACGTGGAAGCGTCGGCGGCGGCGGCGCACAAGGCGACGGCGCTGACGTTCATGCAGCAGCAGGAGCTGGAGCACCAGGTGCTCATCTACCGCTACTTCGCCGCGGGCGCGCCCGTGCCGGTGCACCTCGTGCTCCCCATCTGGAAGAGCGTCGCGTCCTCCTCCTTCGGCCCGCACCGCTTCCCTTCCCTGGCAGTGATGGGGTTGGGGAACCTGTGCTTCGACTACCGGAGCAGCATGGAGCCGGACCCAGGGCGGTGCAGGCGCACGGACGGCAAGAAGTGGCGGTGCTCGCGCGACGTGGTGCCGGGGCACAAGTACTGCGAGCGGCACGTCCACCGCGGACGCGGCCGTTCAAGAAAGCCTGTGGAAGCCTCCGCGGCCGCCACCCCGGCGAACAACGGCGGCGGCGGTGGCATCGTCTTCTCCCCCACCAGCGTCCTCCTCGCCCACGGCACCGCGCGCGCCACCTGACCAGTGACCAGACCGGCGCCTGTTTGTTTGTTTGTCTCGGCGCATGGGAAAACCCAAATCCGCAGGGATTATGTCATGTCCTGTAACTCTTTTTTTCCTCGCAACTTTTGAAGCCAAAACAATTCTCACCGT] [+] EMBL AK108170 [CTGCCCCCCGTCTTCTTTCTTCATTCCTCTTCCCACCAAGAACCCCAAACCTTACCTCCATTGAGTTCGAAACCGAGGAGCGAGGAGCTACAAGCCGAGTTGTCAGAATGGATGAGGAGAAGGAAGCCGACTCGCCGCAGCCACCGTCCAAGCTGCCTCGCCTCTCCGGCGCTGACCCGAATGCCGGAGTGGTGACCATGGCAGCACCCCCGCCGCCGGTGGGTCTTGGGCTGGGGCTTGGACTCGGCGGCGACAGCCGCGGCGAGCGTGACGTGGAAGCGTCGGCGGCGGCGGCGCACAAGGCGACGGCGCTGACGTTCATGCAGCAGCAGGAGCTGGAGCACCAGGTGCTCATCTACCGCTACTTCGCCGCGGGCGCGCCCGTGCCGGTGCACCTCGTGCTCCCCATCTGGAAGAGCGTCGCGTCCTCCTCCTTCGGCCCGCACCGCTTCCCTTCCCTGGCAGTGATGGGGTTGGGGAACCTGTGCTTCGACTACCGGAGCAGCATGGAGCCGGACCCAGGGCGGTGCAGGCGCACGGACGGCAAGAAGTGGCGGTGCTCGCGCGACGTGGTGCCGGGGCACAAGTACTGCGAGCGGCACGTCCACCGCGGACGCGGCCGTTCAAGAAAGCCTGTGGAAGCCTCCGCGGCCGCCACCCCGGCGAACAACGGCGGCGGCGGTGGCATCGTCTTCTCCCCCACCAGCGTCCTCCTCGCCCACGGCACCGCGCGCGCCACCTGACCAGTGACCAGACCGGCGCCTGTTTGTTTGTTTGTCTCGGCGCATGGGAAAACCCAAATCCGCAGGGATTATGTCATGTCCTGTAACTCTTTTTTTCCTCGCAACTTTTGAAGCCAAAACAATTCTCACCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3219#0 GATTTTACTTGCGTCAGCTCCGGCTACCGTGGTCAATGTGCACAATATTTCATTTGGTCC 60 consensus_3219#1 ------------------------------------------------------------ consensus_3219#0 TCACCTCAGCCCTGTAGGCATGCAGGCAGCAGGCCTTCAGTTACTGCATCCCTTCGGAAT 120 consensus_3219#1 ------------------------------------------------------------ consensus_3219#0 CGTTAAATGAACAGTATTCAAGCAGCCGCAGGAGTATGTGTCCGGTGTCCCACTGACACC 180 consensus_3219#1 ------------------------------------------------------------ consensus_3219#0 GATAAGCAGCGACAACGTCGACACTCAACATATCCCATCCCTTCCTTATCCCAACGACCT 240 consensus_3219#1 -----------------------------CTGCCCCCCGTCTTCTTTCTTCATTCCTCTT 31 * *** **** ** * * * * * consensus_3219#0 GC-ACGCTGCATTTTCATCACTAGCATCAGTGTATTCAAACCTGCAGCTTACACTGAAGA 299 consensus_3219#1 CCCACCAAGAACCCCAAACCTTACCTCCATTGAGTTCGAAACCGAGG-----AGCGAGGA 86 * ** * * * * ** * ** ** *** ** * * * * ** ** consensus_3219#0 GTGAAGACTGAACTCCACAGATATGTTGGCCGAGGGAAGGCAAGTCTACTTGCCGCCGCC 359 consensus_3219#1 GCTACAAGCCGAGTTGTCAGAA----TGGATGAGGAGAAGGAAGCCGACT---CGCCGCA 139 * * * * * **** *** **** * * *** * *** ****** consensus_3219#0 GCCGCCGTCCAAGCTTCCTCGTCTCTCCGGCACCGATCCAACCGACGGCGTGGTGACGAT 419 consensus_3219#1 GCCACCGTCCAAGCTGCCTCGCCTCTCCGGCGCTGACCCGAATGCCGGAGTGGTGACCAT 199 *** *********** ***** ********* * ** ** * * *** ******** ** consensus_3219#0 GGCAGCGCCGTCGCCGCTGGT---TCTTGGGCTGGGTCTCGGTCTGGGCGGCAGCGGCAG 476 consensus_3219#1 GGCAGCACCCCCGCCGCCGGTGGGTCTTGGGCTGGGGCTTGGACTCGGCGGCGACAGCCG 259 ****** ** ****** *** ************ ** ** ** ****** * ** * consensus_3219#0 CGACAGCAGTGGGAGCGACGCGGAAGCGTCTGCGGCCACCGTGCGGGAGGCGCGGCCGCC 536 consensus_3219#1 CGGC------GAGCGTGACGTGGAAGCGTCGGCGGCGGCGGCGCACAAGGCGA------- 306 ** * * * * **** ********* ***** * * ** ***** consensus_3219#0 GTCGGCGCTGACGTTCATGCAGCGGCAGGAGCTGGAGCAGCAGGTGCTCATCTACCGCTA 596 consensus_3219#1 --CGGCGCTGACGTTCATGCAGCAGCAGGAGCTGGAGCACCAGGTGCTCATCTACCGCTA 364 ********************* *************** ******************** consensus_3219#0 CTTCGCCGCCGGCGCGCCTGTGCCGGTTCACCTCGTGCTGCCCATATGGAAGAGCATCGC 656 consensus_3219#1 CTTCGCCGCGGGCGCGCCCGTGCCGGTGCACCTCGTGCTCCCCATCTGGAAGAGCGTCGC 424 ********* ******** ******** *********** ***** ********* **** consensus_3219#0 CGCCGCCTCCTCGTTCGGCCCGCAAAGCTTTCCCTCCCTGAC------GGGCCTGGGGAG 710 consensus_3219#1 GT---CCTCCTCCTTCGGCCCGCACCGCTTCCCTTCCCTGGCAGTGATGGGGTTGGGGAA 481 ******* *********** **** ** ****** * *** ****** consensus_3219#0 CCTGTGCTTCGACTACAGGAGCAGCATGGAGCCGGAGCCGGGGCGGTGCCGGCGCACGGA 770 consensus_3219#1 CCTGTGCTTCGACTACCGGAGCAGCATGGAGCCGGACCCAGGGCGGTGCAGGCGCACGGA 541 **************** ******************* ** ********* ********** consensus_3219#0 CGGCAAGAAGTGGCGGTGCTCGCGCGACGTGGTGCCGGGGCACAAGTATTGCGAGCGGCA 830 consensus_3219#1 CGGCAAGAAGTGGCGGTGCTCGCGCGACGTGGTGCCGGGGCACAAGTACTGCGAGCGGCA 601 ************************************************ *********** consensus_3219#0 CGTCCACCGTGGCCACGGCCGTTCAAGAAAGCCTATGGAAGCCTCTGCAGCAGTCGCTCC 890 consensus_3219#1 CGTCCACCGCGGACGCGGCCGTTCAAGAAAGCCTGTGGAAGCCTCCGCGGCCGCCACCCC 661 ********* ** * ******************* ********** ** ** * * * ** consensus_3219#0 CACATATCTCCCGGTCCGGCCGGCACTCCACACCGTCGCCACCCTCGCCACCAGCGCGCC 950 consensus_3219#1 GGCGAA-----CAACGGCGGCGGCGGTG-GCATCGTCTTCTCCCCCACCAGC-GTCCTCC 714 * * * * **** * ** **** * *** * *** * * * ** consensus_3219#0 ATCGCTGTCGCACCTCGGTTTCTCCTCCGCCAGCAAAGTGCTCCTCGCCCACACCACCAC 1010 consensus_3219#1 TCGCCCACGGCACCGCGCGCGCCACCTGACCAGTGACCAGACCGGCGCCTGTTTGTTTGT 774 * ***** ** * * **** * * * **** consensus_3219#0 CGGCACCACGCGCGCTACTTGATCTCATTGTTATCTCCGAGGATTATGCCGGTGCACTGT 1070 consensus_3219#1 TTGTCTCG-GCGCATGGGAAAACCCAA-----ATCCGCAGGGATTATGTCA-TGTCCTGT 827 * * **** * * * *** * ******** * ** **** consensus_3219#0 CTGTAACCTTTTTCTCGTAATCACGCCTCGGTTTGTTCCCAATGCA-TCGTCACGCATTG 1129 consensus_3219#1 AACTCTTTTTTTCCTCGCAACT---------TTTGAAGCCAAAACAATTCTCAC-CGT-- 875 * **** **** ** **** **** ** * **** * * consensus_3219#0 CTAGTTTGACAGTTTGCTACCGCTGCCTCTGTGTGTGCCTGTGCGTGTGGCAGCCGAGGT 1189 consensus_3219#1 ------------------------------------------------------------ consensus_3219#0 GTTTTTGTTTGGTTGGGTGGTGGGAGGCGCGCCCCGGTGCGGTGGTGGGCGTGGCCCCCG 1249 consensus_3219#1 ------------------------------------------------------------ consensus_3219#0 GCTACCTAGTGCTGGTTCCTGCGTGTGCCTGTCGAACCTGTGGAGCGTGGTCGGAAGTAC 1309 consensus_3219#1 ------------------------------------------------------------ consensus_3219#0 GGTACGCACTGTCCGGTCTCATATGCCGGGGCAGAGGGGTTCGGTCCAGTGTGGTGCAGG 1369 consensus_3219#1 ------------------------------------------------------------ consensus_3219#0 CGTGCGGATTGGGATCACATGCAGTGGCTACTGCAACTTATGCAGTCCTAAAGACACCAT 1429 consensus_3219#1 ------------------------------------------------------------ consensus_3219#0 TGAATTATAAATTAACGTCCTAGATCTTTCCTTGATACTGTTCACAAATAACAGTGAAAA 1489 consensus_3219#1 ------------------------------------------------------------ consensus_3219#0 GTTCCTTCCTGTAGCAGGTACTATAGCAATTACTGTTTAAAATAACTGTAG 1540 consensus_3219#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||