These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3227#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 719 fasta sequence [TCTCTCATTTTAATTTGTTAACCGATGTGTACTTTTAATATATTCGTGCGCTGATTGTGTGTTGCATAGGGTTTAAGCTATCTGAAAAGGGGGGATTTTTGGGGTAATAGAAACACCAAATTTTGGTGTGATAGAACGTTTTTATGGTTCTTGAGGGATATCAAAGAGTATCATACCTATTAGTCTTAATTTAAGGAATCTTTTGTATATATCTCCTCAATGACAATAAAAATATCTAACTAAATCGTACTATCAAAGAGGTATATATAGTGCCATCAGTGCATCATATTCTATCTTGTATGAAGCTGTTAAAAATTAATGAAGTAACAGAAACACCAAATTTTGGTGTGATAGAACGTTTTTATGGTTCTTGAGGGATATAAAAGAGTATCATACCTTTTAGTCTTAATTTAAGGAATCTTCTGCATATATCTCCTCAATGACAATAAAAACGTTCTATCACACCAAAATTTGGTGTGATAGAACGTTTTTATGGTTCTTGAGGGATATAAAAGAGTATCGTACCTTTTAGTCTTAATTTAAGGAATCTTCTGCATATATCTCCTCAATGACAATAAAAATATCTAATTAAATCGTACTTTCAAAGAGGTATTCATACCGCCATCAATGCATTATATTCCATCTTATATTAAGCTGTCAAAAATTAATGAAGTAGCAGTACGTACCCTAGCTCCAGGGCCAGCACATNCCAATGGTGG] [+] EMBL CA766175 [TCTCTCATTTTAATTTGTTAACCGATGTGTACTTTTAATATATTCGTGCGCTGATTGTGTGTTGCATAGGGTTTAAGCTATCTGAAAAGGGGGGATTTTTGGGGTAATAGAAACACCAAATTTTGGTGTGATAGAACGTTTTTATGGTTCTTGAGGGATATCAAAGAGTATCATACCTATTAGTCTTAATTTAAGGAATCTTTTGTATATATCTCCTCAATGACAATAAAAATATCTAACTAAATCGTACTATCAAAGAGGTATATATAGTGCCATCAGTGCATCATATTCTATCTTGTATGAAGCTGTTAAAAATTAATGAAGTAACAGAAACACCAAATTTTGGTGTGATAGAACGTTTTTATGGTTCTTGAGGGATATAAAAGAGTATCATACCTTTTAGTCTTAATTTAAGGAATCTTCTGCATATATCTCCTCAATGACAATAAAAACGTTCTATCACACCAAAATTTGGTGTGATAGAACGTTTTTATGGTTCTTGAGGGATATAAAAGAGTATCGTACCTTTTAGTCTTAATTTAAGGAATCTTCTGCATATATCTCCTCAATGACAATAAAAATATCTAATTAAATCGTACTTTCAAAGAGGTATTCATACCGCCATCAATGCATTATATTCCATCTTATATTAAGCTGTCAAAAATTAATGAAGTAGCAGTACGTACCCTAGCTCCAGGGCCAGCACATNCCAATGGTGG] consensusID : consensus_3227#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 417 fasta sequence [CAAGGGGGGATTTTTGGGGTAATAGAAACACCAAATTTTGGTGTGATAGAACGTTTTTATGGTTCTTGAGGGATATCAAAGAGTATCATACCTATTAGTCTTAATTTAAGGAATCTTTTGTATATATCTCCTCAATGACAATAAAAATATCTAACTAAATCGTACTATCAAAGAGGTATATATATGTGCCATCAGTGCATCATATTCTATCTTGTATGAAGCTGTTAAAAATTAATGAAGTAACAGAAACACCAAATTTTGGTGTGATAGAACGTTTTTATGGTTCTTGAGGGATATAAAAGAGTATCATACCTTTTAGTCTTAATTTAAGGAATCTTCTGCATATATCTCCTCAATGACAATAAAAATATCTAATTAAATCGTACTTTCAAAGAGGTATTCATACCGCCATCAATG] [+] EMBL CB096752 [CAAGGGGGGATTTTTGGGGTAATAGAAACACCAAATTTTGGTGTGATAGAACGTTTTTATGGTTCTTGAGGGATATCAAAGAGTATCATACCTATTAGTCTTAATTTAAGGAATCTTTTGTATATATCTCCTCAATGACAATAAAAATATCTAACTAAATCGTACTATCAAAGAGGTATATATATGTGCCATCAGTGCATCATATTCTATCTTGTATGAAGCTGTTAAAAATTAATGAAGTAACAGAAACACCAAATTTTGGTGTGATAGAACGTTTTTATGGTTCTTGAGGGATATAAAAGAGTATCATACCTTTTAGTCTTAATTTAAGGAATCTTCTGCATATATCTCCTCAATGACAATAAAAATATCTAATTAAATCGTACTTTCAAAGAGGTATTCATACCGCCATCAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3227#0 TCTCTCATTTTAATTTGTTAACCGATGTGTACTTTTAATATATTCGTGCGCTGATTGTGT 60 consensus_3227#1 ------------------------------------------------------------ consensus_3227#0 GTTGCATAGGGTTTAAGCTATCTGAAAAGGGGGGATTTTTGGGGTAATAGAAACACCAAA 120 consensus_3227#1 -------------------------CAAGGGGGGATTTTTGGGGTAATAGAAACACCAAA 35 ********************************** consensus_3227#0 TTTTGGTGTGATAGAACGTTTTTATGGTTCTTGAGGGATATCAAAGAGTATCATACCTAT 180 consensus_3227#1 TTTTGGTGTGATAGAACGTTTTTATGGTTCTTGAGGGATATCAAAGAGTATCATACCTAT 95 ************************************************************ consensus_3227#0 TAGTCTTAATTTAAGGAATCTTTTGTATATATCTCCTCAATGACAATAAAAATATCTAAC 240 consensus_3227#1 TAGTCTTAATTTAAGGAATCTTTTGTATATATCTCCTCAATGACAATAAAAATATCTAAC 155 ************************************************************ consensus_3227#0 TAAATCGTACTATCAAAGAGGTATATATA-GTGCCATCAGTGCATCATATTCTATCTTGT 299 consensus_3227#1 TAAATCGTACTATCAAAGAGGTATATATATGTGCCATCAGTGCATCATATTCTATCTTGT 215 ***************************** ****************************** consensus_3227#0 ATGAAGCTGTTAAAAATTAATGAAGTAACAGAAACACCAAATTTTGGTGTGATAGAACGT 359 consensus_3227#1 ATGAAGCTGTTAAAAATTAATGAAGTAACAGAAACACCAAATTTTGGTGTGATAGAACGT 275 ************************************************************ consensus_3227#0 TTTTATGGTTCTTGAGGGATATAAAAGAGTATCATACCTTTTAGTCTTAATTTAAGGAAT 419 consensus_3227#1 TTTTATGGTTCTTGAGGGATATAAAAGAGTATCATACCTTTTAGTCTTAATTTAAGGAAT 335 ************************************************************ consensus_3227#0 CTTCTGCATATATCTCCTCAATGACAATAAAAACGTTCTATCACACCAAAATTTGGTGTG 479 consensus_3227#1 CTTCTGCATATATCTCCTCAATGACAATAAAAATATCTAATTAAATCGTACTTT----CA 391 ********************************* * ** * * * * *** consensus_3227#0 ATAGAACGTTTTTATGGTTCTTGAGGGATATAAAAGAGTATCGTACCTTTTAGTCTTAAT 539 consensus_3227#1 AAGAGGTATTCATACCGCCATCAATG---------------------------------- 417 * ** ** * * * * consensus_3227#0 TTAAGGAATCTTCTGCATATATCTCCTCAATGACAATAAAAATATCTAATTAAATCGTAC 599 consensus_3227#1 ------------------------------------------------------------ consensus_3227#0 TTTCAAAGAGGTATTCATACCGCCATCAATGCATTATATTCCATCTTATATTAAGCTGTC 659 consensus_3227#1 ------------------------------------------------------------ consensus_3227#0 AAAAATTAATGAAGTAGCAGTACGTACCCTAGCTCCAGGGCCAGCACATNCCAATGGTGG 719 consensus_3227#1 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||