cluster # 3239

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Oryza sativa
cluster # 3239 cluster # 3239 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3239#0 length = 685 sequences # 1

consensus_3239#1 length = 429 sequences # 1

consensusID : consensus_3239#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 685
fasta sequence

                              [TTTTTTTTTTTTTTGGAACTCTGCAAGGATCTTTTTTTTCTTTTTGTTTCTCATTCATTTCGAGAATAACTTATCTTGATTTCACAGGGATGACAGGTATAGATACCAACGAATTTACAGACTATCGGTATACAAAACAAATGAGTACCGTTACAAAAAGAAAAATGTGAGGGGAAAAAATGAATTATACCTATATGGCACATTGGCCGCGATTATGTACACCGCAGCATCATCCCTTTATTGAATATATAGTCTTTGGGCTACTCAAATAACTTTGAAGGCTTCATCTCTGTACCCTGGCAATAAAACCTCGGCCTGGAAAGCTTAGCTACCAGGCCTCTCTGCAGCACGCACTTGTCCGATCAGTCCAATGGCACCTCGCGGTTCCATGACGATGCATGACGAGTTAGCTGACCATGCCTCTAGTGTTGAAACTGAATTCTGTTCTCAAGTGTTCTTGGACAATAGTTTTAACAGTATGTAGCCATGTAGGGGGGAAAGAATAAGCTCATATCTCATGCCAGCTGTCCCGGCCATTGGTACCTAATAAAGGGCTTTTGAGCCACCACAAGGTTTGTCATCACTAGCTTTTGGCAAGAGCCAAATACGGGCTTCCCCACCTTAAACTGGGGTTACCACAGAATGTTCGAGCTCCCCAAAACAGGCCCCCCTCCGCGGATTATTA]

[+] EMBL CA761720             [TTTTTTTTTTTTTTGGAACTCTGCAAGGATCTTTTTTTTCTTTTTGTTTCTCATTCATTTCGAGAATAACTTATCTTGATTTCACAGGGATGACAGGTATAGATACCAACGAATTTACAGACTATCGGTATACAAAACAAATGAGTACCGTTACAAAAAGAAAAATGTGAGGGGAAAAAATGAATTATACCTATATGGCACATTGGCCGCGATTATGTACACCGCAGCATCATCCCTTTATTGAATATATAGTCTTTGGGCTACTCAAATAACTTTGAAGGCTTCATCTCTGTACCCTGGCAATAAAACCTCGGCCTGGAAAGCTTAGCTACCAGGCCTCTCTGCAGCACGCACTTGTCCGATCAGTCCAATGGCACCTCGCGGTTCCATGACGATGCATGACGAGTTAGCTGACCATGCCTCTAGTGTTGAAACTGAATTCTGTTCTCAAGTGTTCTTGGACAATAGTTTTAACAGTATGTAGCCATGTAGGGGGGAAAGAATAAGCTCATATCTCATGCCAGCTGTCCCGGCCATTGGTACCTAATAAAGGGCTTTTGAGCCACCACAAGGTTTGTCATCACTAGCTTTTGGCAAGAGCCAAATACGGGCTTCCCCACCTTAAACTGGGGTTACCACAGAATGTTCGAGCTCCCCAAAACAGGCCCCCCTCCGCGGATTATTA]




>consensus_3239#0
TTTTTTTTTTTTTTGGAACTCTGCAAGGATCTTTTTTTTCTTTTTGTTTCTCATTCATTT
CGAGAATAACTTATCTTGATTTCACAGGGATGACAGGTATAGATACCAACGAATTTACAG
ACTATCGGTATACAAAACAAATGAGTACCGTTACAAAAAGAAAAATGTGAGGGGAAAAAA
TGAATTATACCTATATGGCACATTGGCCGCGATTATGTACACCGCAGCATCATCCCTTTA
TTGAATATATAGTCTTTGGGCTACTCAAATAACTTTGAAGGCTTCATCTCTGTACCCTGG
CAATAAAACCTCGGCCTGGAAAGCTTAGCTACCAGGCCTCTCTGCAGCACGCACTTGTCC
GATCAGTCCAATGGCACCTCGCGGTTCCATGACGATGCATGACGAGTTAGCTGACCATGC
CTCTAGTGTTGAAACTGAATTCTGTTCTCAAGTGTTCTTGGACAATAGTTTTAACAGTAT
GTAGCCATGTAGGGGGGAAAGAATAAGCTCATATCTCATGCCAGCTGTCCCGGCCATTGG
TACCTAATAAAGGGCTTTTGAGCCACCACAAGGTTTGTCATCACTAGCTTTTGGCAAGAG
CCAAATACGGGCTTCCCCACCTTAAACTGGGGTTACCACAGAATGTTCGAGCTCCCCAAA
ACAGGCCCCCCTCCGCGGATTATTA

consensusID : consensus_3239#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 429
fasta sequence

                              [TTATGTACACCGCAGCATCATCCCTTTATTGAATATATAGTCTTTGTGCTACTCAAATAACTTTGAAGGCTTCATCTCTGTACCCTGGCAATAAAACCTCGGCCTGGAAAGCTTAGCTACCAGGCCTCTCTGCAGCACGCACTTGTCCGATCAGTCCAATGGCACCTTGCGGTTCCATGACGATGCATGACGAGTTAGCTGACCATGCCTCTAGTGTTGAAACTGAATTCTGTTCTCAACTGTTCTTGGACAATAGTTTTAACAGTATGTAGCCATGTAGGTGGTAAAGAATAAGTTCATATCTCATGTCAGCTGTCCTGTTCATTGTTTTCTAATAAATGGCTTCTGACAGACCAGAAGTTTTTCATCACTAGCTATGTCAAGATCCAAAATACGGGCATCCCACCTGAGCTGTGTTACAACAGATCT]

[-] EMBL AU166798             [TTATGTACACCGCAGCATCATCCCTTTATTGAATATATAGTCTTTGTGCTACTCAAATAACTTTGAAGGCTTCATCTCTGTACCCTGGCAATAAAACCTCGGCCTGGAAAGCTTAGCTACCAGGCCTCTCTGCAGCACGCACTTGTCCGATCAGTCCAATGGCACCTTGCGGTTCCATGACGATGCATGACGAGTTAGCTGACCATGCCTCTAGTGTTGAAACTGAATTCTGTTCTCAACTGTTCTTGGACAATAGTTTTAACAGTATGTAGCCATGTAGGTGGTAAAGAATAAGTTCATATCTCATGTCAGCTGTCCTGTTCATTGTTTTCTAATAAATGGCTTCTGACAGACCAGAAGTTTTTCATCACTAGCTATGTCAAGATCCAAAATACGGGCATCCCACCTGAGCTGTGTTACAACAGATCT]




>consensus_3239#1
TTATGTACACCGCAGCATCATCCCTTTATTGAATATATAGTCTTTGTGCTACTCAAATAA
CTTTGAAGGCTTCATCTCTGTACCCTGGCAATAAAACCTCGGCCTGGAAAGCTTAGCTAC
CAGGCCTCTCTGCAGCACGCACTTGTCCGATCAGTCCAATGGCACCTTGCGGTTCCATGA
CGATGCATGACGAGTTAGCTGACCATGCCTCTAGTGTTGAAACTGAATTCTGTTCTCAAC
TGTTCTTGGACAATAGTTTTAACAGTATGTAGCCATGTAGGTGGTAAAGAATAAGTTCAT
ATCTCATGTCAGCTGTCCTGTTCATTGTTTTCTAATAAATGGCTTCTGACAGACCAGAAG
TTTTTCATCACTAGCTATGTCAAGATCCAAAATACGGGCATCCCACCTGAGCTGTGTTAC
AACAGATCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3239#0      TTTTTTTTTTTTTTGGAACTCTGCAAGGATCTTTTTTTTCTTTTTGTTTCTCATTCATTT 60
consensus_3239#1      ------------------------------------------------------------
                                                                                  

consensus_3239#0      CGAGAATAACTTATCTTGATTTCACAGGGATGACAGGTATAGATACCAACGAATTTACAG 120
consensus_3239#1      ------------------------------------------------------------
                                                                                  

consensus_3239#0      ACTATCGGTATACAAAACAAATGAGTACCGTTACAAAAAGAAAAATGTGAGGGGAAAAAA 180
consensus_3239#1      ------------------------------------------------------------
                                                                                  

consensus_3239#0      TGAATTATACCTATATGGCACATTGGCCGCGATTATGTACACCGCAGCATCATCCCTTTA 240
consensus_3239#1      --------------------------------TTATGTACACCGCAGCATCATCCCTTTA 28
                                                      ****************************

consensus_3239#0      TTGAATATATAGTCTTTGGGCTACTCAAATAACTTTGAAGGCTTCATCTCTGTACCCTGG 300
consensus_3239#1      TTGAATATATAGTCTTTGTGCTACTCAAATAACTTTGAAGGCTTCATCTCTGTACCCTGG 88
                      ****************** *****************************************

consensus_3239#0      CAATAAAACCTCGGCCTGGAAAGCTTAGCTACCAGGCCTCTCTGCAGCACGCACTTGTCC 360
consensus_3239#1      CAATAAAACCTCGGCCTGGAAAGCTTAGCTACCAGGCCTCTCTGCAGCACGCACTTGTCC 148
                      ************************************************************

consensus_3239#0      GATCAGTCCAATGGCACCTCGCGGTTCCATGACGATGCATGACGAGTTAGCTGACCATGC 420
consensus_3239#1      GATCAGTCCAATGGCACCTTGCGGTTCCATGACGATGCATGACGAGTTAGCTGACCATGC 208
                      ******************* ****************************************

consensus_3239#0      CTCTAGTGTTGAAACTGAATTCTGTTCTCAAGTGTTCTTGGACAATAGTTTTAACAGTAT 480
consensus_3239#1      CTCTAGTGTTGAAACTGAATTCTGTTCTCAACTGTTCTTGGACAATAGTTTTAACAGTAT 268
                      ******************************* ****************************

consensus_3239#0      GTAGCCATGTAGGGGGGAAAGAATAAGCTCATATCTCATGCCAGCTGTCCCGGCCATTGG 540
consensus_3239#1      GTAGCCATGTAGGTGGTAAAGAATAAGTTCATATCTCATGTCAGCTGTCCTGTTCATTGT 328
                      ************* ** ********** ************ ********* *  ***** 

consensus_3239#0      TACCTAATAAAGGGCTTTTGAGCCACCACAAGGTTTGTCATCACTAGCTTTTGGCAAGAG 600
consensus_3239#1      TTTCTAATAAATGGCTTCTGACAGACCAGAAG-TTTTTCATCACTAGCTAT-GTCAAGAT 386
                      *  ******** ***** ***   **** *** *** ************ * * ***** 

consensus_3239#0      CCAAA-TACGGGCTTCCCCACCTTAAACTGGGGTTACCACAGAATGTTCGAGCTCCCCAA 659
consensus_3239#1      CCAAAATACGGGCATCCCA--CCTGAGCTGTG-TTACAACAGATCT-------------- 429
                      ***** ******* ****   * * * *** * **** *****                 

consensus_3239#0      AACAGGCCCCCCTCCGCGGATTATTA 685
consensus_3239#1      --------------------------