Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3240 cluster # 3240       Sequences # 2       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3240#0 length = 1374 sequences # 2  
consensusID : consensus_3240#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1374
fasta sequence 
                              [TAGGCCGGACACTTGCACATTCAACACTCTGGTGGCCGTGCATTGTAGGGAAGGCCGGATCGAGGATGCTATGAAGGTGTTTAATCAGATGGTGGAGCTCCGTGTGAGACGTGATTCTGCAAGCTATAGCATGGTCATCCGGGTGTTGTGTGAGAATGGGGAATTTGGGCAGGCTGAGGAGCTTGTGGATGAGCTCTTGGAGAAGGAGGTGCTCAAGAAGAGAGGGGGTTGCACGCCGCTCATTGCAGCGTACAACCCGGTTTTTGTGTACTTGTGTGAGCATGGGAAGACAAAGAAGGCAAGGATGCTGTTTGGGCAGCTGCTGGACCGGAGGAGCAAGGTCGATGTTCCTGCATTCAAGACATTGATCCTTGGGCATTGCAGAGAGGGTGATTTCGAAGAAGGGTATGCATTGCTGCTCTCAATGTTGAAGCGGGATCTTGTCCCTGATGATGAATGCTACATTGCCGTGATTGAAGGGTTTTCACAGAGGGGAAGGATGAAGTTTGCATGGGAAGCCTTGCACAGGATGTTGAATAGCGGTCTTCGGCCAAGCACAAGTACTTTTCACTCGGTTCTTTTGGGGCTTTTGAACAAAGATGGTTGTGCAAAAGAAGCAGCTGATTTGATTGAGATAATGCTAGAGAGGAAGATTCGCCAAAATGTTGATCTTTCGACAAATTTGGTAGATACATTGTTCAGGAACAACCTAAATGACCGTGCTTACAAGATTGTTACATCTCTATATGACCATGGCTATTACATCAAGATGGAAAAGTTAATCGCAAATCTTTGCGAGGAAAAGAAGTTCATAGAAGCTGCAGATTTTACTTTGTTTAGCTTGGAGAAGTCTCAGAATTTTGGTGTAGCCATTCCAAGCATGGTTCTGGATGGTCTTTGCATGACTGGTAGAGCTTCAGAAGCATTCCGGCTGTTCTATGAACTCATTGAGAACAGAAGTGCTTTGGCTTCTGTCGCTGCACCTCGTAGTTTAGTTGCACTTCATCATGCACTGGAGGAATCCGGGAAAATGAAGGAAGCTGATTTTATTGCTAGACAGATGAGACGTGCAAGTGCCAGAATAAGGGAAAGAATGTAGTGGGTTGCTTTGTCCCAAGGAGCATTTCAATCGCATGCCCTTTGCTTCTCCAAACAGGATGGACTAATAAGTGTGAACTTAAAAGAACGAACAGGATGCAGAAACTGTGCCTGATCCACTGCCCCATAAGAAATGGATCAACCAACTGTATGATGTTAGAATGCAGATTAATTCAGCAGATATCCTTTTTTTTTCAGGGAAACTATGGCGGGTGGATTAGCACCGGCCTGAACATTTATTGATAAATAAAGAGATAGTTACAAATAAAGATAATT]

[+] EMBL AK109567             [TAGGCCGGACACTTGCACATTCAACACTCTGGTGGCCGTGCATTGTAGGGAAGGCCGGATCGAGGATGCTATGAAGGTGTTTAATCAGATGGTGGAGCTCCGTGTGAGACGTGATTCTGCAAGCTATAGCATGGTCATCCGGGTGTTGTGTGAGAATGGGGAATTTGGGCAGGCTGAGGAGCTTGTGGATGAGCTCTTGGAGAAGGAGGTGCTCAAGAAGAGAGGGGGTTGCACGCCGCTCATTGCAGCGTACAACCCGGTTTTTGTGTACTTGTGTGAGCATGGGAAGACAAAGAAGGCAAGGATGCTGTTTGGGCAGCTGCTGGACCGGAGGAGCAAGGTCGATGTTCCTGCATTCAAGACATTGATCCTTGGGCATTGCAGAGAGGGTGATTTCGAAGAAGGGTATGCATTGCTGCTCTCAATGTTGAAGCGGGATCTTGTCCCTGATGATGAATGCTACATTGCCGTGATTGAAGGGTTTTCACAGAGGGGAAGGATGAAGTTTGCATGGGAAGCCTTGCACAGGATGTTGAATAGCGGTCTTCGGCCAAGCACAAGTACTTTTCACTCGGTTCTTTTGGGGCTTTTGAACAAAGATGGTTGTGCAAAAGAAGCAGCTGATTTGATTGAGATAATGCTAGAGAGGAAGATTCGCCAAAATGTTGATCTTTCGACAAATTTGGTAGATACATTGTTCAGGAACAACCTAAATGACCGTGCTTACAAGATTGTTACATCTCTATATGACCATGGCTATTACATCAAGATGGAAAAGTTAATCGCAAATCTTTGCGAGGAAAAGAAGTTCATAGAAGCTGCAGATTTTACTTTGTTTAGCTTGGAGAAGTCTCAGAATTTTGGTGTAGCCATTCCAAGCATGGTTCTGGATGGTCTTTGCATGACTGGTAGAGCTTCAGAAGCATTCCGGCTGTTCTATGAACTCATTGAGAACAGAAGTGCTTTGGCTTCTGTCGCTGCACCTCGTAGTTTAGTTGCACTTCATCATGCACTGGAGGAATCCGGGAAAATGAAGGAAGCTGATTTTATTGCTAGACAGATGAGACGTGCAAGTGCCAGAATAAGGGAAAGAATGTAGTGGGTTGCTTTGTCCCAAGGAGCATTTCAATCGCATGCCCTTTGCTTCTCCAAACAGGATGGACTAATAAGTGTGAACTTAAAAGAACGAACAGGATGCAGAAACTGTGCCTGATCCACTGCCCCATAAGAAATGGATCAACCAACTGTATGATGTTAGAATGCAGATTAATTCAGCAGATATCCTTTTTTTTTCAGGGAAACTATGGCGGGTGGATTAGCACCGGCCTGAACATTTATTGATAAATAAAGAGATAGTTACAAATAAAGATAATT]
[+] EMBL CA766277             [                                                                                                                                                                                                                                                            CAACCCGGTTTTTGTGTACTTGTGTGAGCATGGGAAGACAAAGAAGGCAAGGATGCTGTTTGGGCAGCTGCTGGACCGGAGGAGCAAGGTCGATGTTCCTGCATTCAAGACATTGATCCTTGGGCATTGCAGAGAGGGTGATTTCGAAGAAGGGTATGCATTGCTGCTCTCAATGTTGAAGCGGGATCTTGTCCCTGATGATGAATGCTACATTGCCGTGATTGAAGGGTTTTCACAGAGGGGAAGGATGAAGTTTGCATGGGAAGCCTTGCACAGGATGTTGAATAGCGGTCTTCGGCCAAGCACAAGTACTTTTCACTCGGTTCTTTTGGGGCTTTTGAACAAAGATGGTTGTGCAAAAGAAGCAGCTGATTTGATTGAGATAATGCTAGAGAGGAAGATTCGCCAAAATGTTGATCTTTCGACAAATTTGGTAGATACATTGTTCAGGAACAACCTAAATGACCGTGCTTACAAGATTGTTACATCTCTATATGACCATGGCTATTACATCAAGATGGAAAAGTTAATCGCAAACCTTTGCGAGGAAAAGAAGTTCATAGAAGCTGCAGATTTTACTTTGTTTAGCTTGGAGAAGTCTCAGAATTTTGGTGTAGCCATTCCAAGCATGGTTCTGGATGGTCTTTGCATGACTGGTAGAGCTTCAGAAGCATTCCGGCTGNTCTATGAACTCATTGAGAACAGAAGTGCTTTGGCTTCTGTCGCTGCACCTCGTAGTTTAGTTGCACTTCATCATGCACTGGAG                                                                                                                                                                                                                                                                                                                                                                    ]




>consensus_3240#0
TAGGCCGGACACTTGCACATTCAACACTCTGGTGGCCGTGCATTGTAGGGAAGGCCGGAT
CGAGGATGCTATGAAGGTGTTTAATCAGATGGTGGAGCTCCGTGTGAGACGTGATTCTGC
AAGCTATAGCATGGTCATCCGGGTGTTGTGTGAGAATGGGGAATTTGGGCAGGCTGAGGA
GCTTGTGGATGAGCTCTTGGAGAAGGAGGTGCTCAAGAAGAGAGGGGGTTGCACGCCGCT
CATTGCAGCGTACAACCCGGTTTTTGTGTACTTGTGTGAGCATGGGAAGACAAAGAAGGC
AAGGATGCTGTTTGGGCAGCTGCTGGACCGGAGGAGCAAGGTCGATGTTCCTGCATTCAA
GACATTGATCCTTGGGCATTGCAGAGAGGGTGATTTCGAAGAAGGGTATGCATTGCTGCT
CTCAATGTTGAAGCGGGATCTTGTCCCTGATGATGAATGCTACATTGCCGTGATTGAAGG
GTTTTCACAGAGGGGAAGGATGAAGTTTGCATGGGAAGCCTTGCACAGGATGTTGAATAG
CGGTCTTCGGCCAAGCACAAGTACTTTTCACTCGGTTCTTTTGGGGCTTTTGAACAAAGA
TGGTTGTGCAAAAGAAGCAGCTGATTTGATTGAGATAATGCTAGAGAGGAAGATTCGCCA
AAATGTTGATCTTTCGACAAATTTGGTAGATACATTGTTCAGGAACAACCTAAATGACCG
TGCTTACAAGATTGTTACATCTCTATATGACCATGGCTATTACATCAAGATGGAAAAGTT
AATCGCAAATCTTTGCGAGGAAAAGAAGTTCATAGAAGCTGCAGATTTTACTTTGTTTAG
CTTGGAGAAGTCTCAGAATTTTGGTGTAGCCATTCCAAGCATGGTTCTGGATGGTCTTTG
CATGACTGGTAGAGCTTCAGAAGCATTCCGGCTGTTCTATGAACTCATTGAGAACAGAAG
TGCTTTGGCTTCTGTCGCTGCACCTCGTAGTTTAGTTGCACTTCATCATGCACTGGAGGA
ATCCGGGAAAATGAAGGAAGCTGATTTTATTGCTAGACAGATGAGACGTGCAAGTGCCAG
AATAAGGGAAAGAATGTAGTGGGTTGCTTTGTCCCAAGGAGCATTTCAATCGCATGCCCT
TTGCTTCTCCAAACAGGATGGACTAATAAGTGTGAACTTAAAAGAACGAACAGGATGCAG
AAACTGTGCCTGATCCACTGCCCCATAAGAAATGGATCAACCAACTGTATGATGTTAGAA
TGCAGATTAATTCAGCAGATATCCTTTTTTTTTCAGGGAAACTATGGCGGGTGGATTAGC
ACCGGCCTGAACATTTATTGATAAATAAAGAGATAGTTACAAATAAAGATAATT

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)