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Oryza sativa
cluster # 3245 cluster # 3245       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3245#0 length = 1088 sequences # 1  
consensus_3245#1 length = 860 sequences # 1  

consensusID : consensus_3245#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1088
fasta sequence
                              [CGCTCACACTCCGCTCATCACTTCACATCTCTCGCCATGTTGTCCACAGCTGCTCGTCCCGCCTTCAGGGCTGGCGCTGCCGCCATGCGCTCGGCGCCCGTCTCCGCCCCTCTCGTCGCTCAGTCCGCCAACTATGCCACTCTCCGTGAGATCGAGGGCCGTCTCAAGTCCATCCGCAACATCGAGAAGATCACCAAGACCATGAAGATTGTCGCCTCCACCAAGCTCACCCGCGCCCAGAGGGCCATGAACGAGTCCATCACCTACGGAAAGACCTCGCAGAAGACCTTCGAGGAGGCCGGCACCGTCCCTGCGGAGGGCGAGGGCAAGAAGTCCCTGCTCGTCATCTGCTCTTCCGACAAGGGTCTCTGTGGTGGTATCCACTCTGGTCTGTCGCGTTACGTCCGCAAGCAGCTCACCACCGACGGCCTGCCCAGCGACATCGACATTGCCGTCATCGGCGAGAAGTGCAAGGCCCAGATGAGCAGGAGCAACCCCAAGAACATGGTTCTCAGCTTCTCTGGTGTCGGCAAGGCCGTCCCGACTTTCGCCGACGCGACCTCCATCGCCGACCAGCTCTGCCTCTTGAACACCCAGTACGACAGCATCAAGATCCTGTACAACAAGTTCATCAACGCTACCAGCTACGAGCCCACCATCATTGAGGCTTTCTCCGAGGAGGCCATCAAGGAGTCTGCCAACTTCTCTTCCTTCGAGATCGACGAGGCTGTCCTCCCCAGCCTCCGCGAGTACGCTCTTGCCAACTCCCTCTTCTGGGCTCTTGCCGAGGGCCACGCCTGCGAGCAGTCCGCCCGCCGCAACGCCATGGACAACGCCTCGAAGAACGCCGGTGAGATGATCACCAAGTTCCAGATTCTCTTCAACCGTACTCGCCAGGCCGTCATTACCGGTGAGCTCGTCGAGATTATCACTGGTGCCGCCGCCTCCGAGGAGTAGACGTAATCCACGAACAACGGAAGATGTCGGAGCATATGATGTGCAGTTGTATTGAGGAAGAGAGGAGCGAGAAATGTATGTATATAGAGCTGGGATTGAGAAGTGCTCCTGCAATCAATGCTACAGTAGTT]

[+] EMBL AK108313             [CGCTCACACTCCGCTCATCACTTCACATCTCTCGCCATGTTGTCCACAGCTGCTCGTCCCGCCTTCAGGGCTGGCGCTGCCGCCATGCGCTCGGCGCCCGTCTCCGCCCCTCTCGTCGCTCAGTCCGCCAACTATGCCACTCTCCGTGAGATCGAGGGCCGTCTCAAGTCCATCCGCAACATCGAGAAGATCACCAAGACCATGAAGATTGTCGCCTCCACCAAGCTCACCCGCGCCCAGAGGGCCATGAACGAGTCCATCACCTACGGAAAGACCTCGCAGAAGACCTTCGAGGAGGCCGGCACCGTCCCTGCGGAGGGCGAGGGCAAGAAGTCCCTGCTCGTCATCTGCTCTTCCGACAAGGGTCTCTGTGGTGGTATCCACTCTGGTCTGTCGCGTTACGTCCGCAAGCAGCTCACCACCGACGGCCTGCCCAGCGACATCGACATTGCCGTCATCGGCGAGAAGTGCAAGGCCCAGATGAGCAGGAGCAACCCCAAGAACATGGTTCTCAGCTTCTCTGGTGTCGGCAAGGCCGTCCCGACTTTCGCCGACGCGACCTCCATCGCCGACCAGCTCTGCCTCTTGAACACCCAGTACGACAGCATCAAGATCCTGTACAACAAGTTCATCAACGCTACCAGCTACGAGCCCACCATCATTGAGGCTTTCTCCGAGGAGGCCATCAAGGAGTCTGCCAACTTCTCTTCCTTCGAGATCGACGAGGCTGTCCTCCCCAGCCTCCGCGAGTACGCTCTTGCCAACTCCCTCTTCTGGGCTCTTGCCGAGGGCCACGCCTGCGAGCAGTCCGCCCGCCGCAACGCCATGGACAACGCCTCGAAGAACGCCGGTGAGATGATCACCAAGTTCCAGATTCTCTTCAACCGTACTCGCCAGGCCGTCATTACCGGTGAGCTCGTCGAGATTATCACTGGTGCCGCCGCCTCCGAGGAGTAGACGTAATCCACGAACAACGGAAGATGTCGGAGCATATGATGTGCAGTTGTATTGAGGAAGAGAGGAGCGAGAAATGTATGTATATAGAGCTGGGATTGAGAAGTGCTCCTGCAATCAATGCTACAGTAGTT]


>consensus_3245#0 CGCTCACACTCCGCTCATCACTTCACATCTCTCGCCATGTTGTCCACAGCTGCTCGTCCC GCCTTCAGGGCTGGCGCTGCCGCCATGCGCTCGGCGCCCGTCTCCGCCCCTCTCGTCGCT CAGTCCGCCAACTATGCCACTCTCCGTGAGATCGAGGGCCGTCTCAAGTCCATCCGCAAC ATCGAGAAGATCACCAAGACCATGAAGATTGTCGCCTCCACCAAGCTCACCCGCGCCCAG AGGGCCATGAACGAGTCCATCACCTACGGAAAGACCTCGCAGAAGACCTTCGAGGAGGCC GGCACCGTCCCTGCGGAGGGCGAGGGCAAGAAGTCCCTGCTCGTCATCTGCTCTTCCGAC AAGGGTCTCTGTGGTGGTATCCACTCTGGTCTGTCGCGTTACGTCCGCAAGCAGCTCACC ACCGACGGCCTGCCCAGCGACATCGACATTGCCGTCATCGGCGAGAAGTGCAAGGCCCAG ATGAGCAGGAGCAACCCCAAGAACATGGTTCTCAGCTTCTCTGGTGTCGGCAAGGCCGTC CCGACTTTCGCCGACGCGACCTCCATCGCCGACCAGCTCTGCCTCTTGAACACCCAGTAC GACAGCATCAAGATCCTGTACAACAAGTTCATCAACGCTACCAGCTACGAGCCCACCATC ATTGAGGCTTTCTCCGAGGAGGCCATCAAGGAGTCTGCCAACTTCTCTTCCTTCGAGATC GACGAGGCTGTCCTCCCCAGCCTCCGCGAGTACGCTCTTGCCAACTCCCTCTTCTGGGCT CTTGCCGAGGGCCACGCCTGCGAGCAGTCCGCCCGCCGCAACGCCATGGACAACGCCTCG AAGAACGCCGGTGAGATGATCACCAAGTTCCAGATTCTCTTCAACCGTACTCGCCAGGCC GTCATTACCGGTGAGCTCGTCGAGATTATCACTGGTGCCGCCGCCTCCGAGGAGTAGACG TAATCCACGAACAACGGAAGATGTCGGAGCATATGATGTGCAGTTGTATTGAGGAAGAGA GGAGCGAGAAATGTATGTATATAGAGCTGGGATTGAGAAGTGCTCCTGCAATCAATGCTA CAGTAGTT



consensusID : consensus_3245#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 860
fasta sequence
                              [GATCCGCAACATCGAGAAAATTACCAAGACGATGAAGATCGTCGCCTCCACCAAGCTCACCCGCGCCCAGAGGGCCATGACCGAGTCCCGCAACTACGGTCAGACCTCCAACACCGTCTTCGAGCAGGCTGAGACGAAGCCCACCGAGGGCGAGGGCAAGAAGACGCTCGTCGTGGTCTGCAGCTCCGACAAGGGTCTCTGCGGTGGTATCCACTCCGGTCTCTCCAGGGCGGTGCGCAAGTTCCTCCTCGAGCAACCCGAGGCCGACCTTGCCATCATCGGCGAGAAGTGCAAGGCCCAGCTCAGCCGTTCCAACGGCAAGAACGTCGTCCTCAGCTTCGCCGGTGTCGGAAAGGACGTCCCTACCTTCGCCGATGCTTCCGCCATCGCCGACATGATCACCACCCTCCCGACCGAGTACTCCTCCATCAAGATCCTCTACAACAAGTTCCTCAACGCCCAGAGCTACGAGGCCACCCCCATCGAGGCTTTCTCCGAGGAGGCCATCCAGCAGTCGCCCAACTTCTCTGCTTTCGAGATCGACGACGAGGTTCTTGGCAACCTCCGTGAGTACGCGCTCGCCAACTCGCTCTACTGGGCTCTGGCCGAGGGTCACGCATGCGAGCAGTCTGCCCGACGAAACGCCATGGACAACGCCTCCAAGAACGCCGGCGACATGATCAACAAGTTCCAGATTCTCTTCAACCGTACCCGTCAAGCCGTCATTACTGGCGAACTCGTTGAAATCATTACTGGTGCGGCTGCTTCCGAGAGCTAGAGGATGCTGTGAGATGTTAGACTATTTACCCAAAACGTCGGCTCGGCTATCCGCCATGAGTTAGGCTGTGTAGAATAAAGCT]

[+] EMBL AK109020             [GATCCGCAACATCGAGAAAATTACCAAGACGATGAAGATCGTCGCCTCCACCAAGCTCACCCGCGCCCAGAGGGCCATGACCGAGTCCCGCAACTACGGTCAGACCTCCAACACCGTCTTCGAGCAGGCTGAGACGAAGCCCACCGAGGGCGAGGGCAAGAAGACGCTCGTCGTGGTCTGCAGCTCCGACAAGGGTCTCTGCGGTGGTATCCACTCCGGTCTCTCCAGGGCGGTGCGCAAGTTCCTCCTCGAGCAACCCGAGGCCGACCTTGCCATCATCGGCGAGAAGTGCAAGGCCCAGCTCAGCCGTTCCAACGGCAAGAACGTCGTCCTCAGCTTCGCCGGTGTCGGAAAGGACGTCCCTACCTTCGCCGATGCTTCCGCCATCGCCGACATGATCACCACCCTCCCGACCGAGTACTCCTCCATCAAGATCCTCTACAACAAGTTCCTCAACGCCCAGAGCTACGAGGCCACCCCCATCGAGGCTTTCTCCGAGGAGGCCATCCAGCAGTCGCCCAACTTCTCTGCTTTCGAGATCGACGACGAGGTTCTTGGCAACCTCCGTGAGTACGCGCTCGCCAACTCGCTCTACTGGGCTCTGGCCGAGGGTCACGCATGCGAGCAGTCTGCCCGACGAAACGCCATGGACAACGCCTCCAAGAACGCCGGCGACATGATCAACAAGTTCCAGATTCTCTTCAACCGTACCCGTCAAGCCGTCATTACTGGCGAACTCGTTGAAATCATTACTGGTGCGGCTGCTTCCGAGAGCTAGAGGATGCTGTGAGATGTTAGACTATTTACCCAAAACGTCGGCTCGGCTATCCGCCATGAGTTAGGCTGTGTAGAATAAAGCT]


>consensus_3245#1 GATCCGCAACATCGAGAAAATTACCAAGACGATGAAGATCGTCGCCTCCACCAAGCTCAC CCGCGCCCAGAGGGCCATGACCGAGTCCCGCAACTACGGTCAGACCTCCAACACCGTCTT CGAGCAGGCTGAGACGAAGCCCACCGAGGGCGAGGGCAAGAAGACGCTCGTCGTGGTCTG CAGCTCCGACAAGGGTCTCTGCGGTGGTATCCACTCCGGTCTCTCCAGGGCGGTGCGCAA GTTCCTCCTCGAGCAACCCGAGGCCGACCTTGCCATCATCGGCGAGAAGTGCAAGGCCCA GCTCAGCCGTTCCAACGGCAAGAACGTCGTCCTCAGCTTCGCCGGTGTCGGAAAGGACGT CCCTACCTTCGCCGATGCTTCCGCCATCGCCGACATGATCACCACCCTCCCGACCGAGTA CTCCTCCATCAAGATCCTCTACAACAAGTTCCTCAACGCCCAGAGCTACGAGGCCACCCC CATCGAGGCTTTCTCCGAGGAGGCCATCCAGCAGTCGCCCAACTTCTCTGCTTTCGAGAT CGACGACGAGGTTCTTGGCAACCTCCGTGAGTACGCGCTCGCCAACTCGCTCTACTGGGC TCTGGCCGAGGGTCACGCATGCGAGCAGTCTGCCCGACGAAACGCCATGGACAACGCCTC CAAGAACGCCGGCGACATGATCAACAAGTTCCAGATTCTCTTCAACCGTACCCGTCAAGC CGTCATTACTGGCGAACTCGTTGAAATCATTACTGGTGCGGCTGCTTCCGAGAGCTAGAG GATGCTGTGAGATGTTAGACTATTTACCCAAAACGTCGGCTCGGCTATCCGCCATGAGTT AGGCTGTGTAGAATAAAGCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3245#0      CGCTCACACTCCGCTCATCACTTCACATCTCTCGCCATGTTGTCCACAGCTGCTCGTCCC 60
consensus_3245#1      ------------------------------------------------------------
                                                                                  

consensus_3245#0      GCCTTCAGGGCTGGCGCTGCCGCCATGCGCTCGGCGCCCGTCTCCGCCCCTCTCGTCGCT 120
consensus_3245#1      ------------------------------------------------------------
                                                                                  

consensus_3245#0      CAGTCCGCCAACTATGCCACTCTCCGTGAGATCGAGGGCCGTCTCAAGTCCATCCGCAAC 180
consensus_3245#1      --------------------------------------------------GATCCGCAAC 10
                                                                         *********

consensus_3245#0      ATCGAGAAGATCACCAAGACCATGAAGATTGTCGCCTCCACCAAGCTCACCCGCGCCCAG 240
consensus_3245#1      ATCGAGAAAATTACCAAGACGATGAAGATCGTCGCCTCCACCAAGCTCACCCGCGCCCAG 70
                      ******** ** ******** ******** ******************************

consensus_3245#0      AGGGCCATGAACGAGTCCATCACCTACGGAAAGACCTCGCAGAAGACCTTCGAGGAGGCC 300
consensus_3245#1      AGGGCCATGACCGAGTCCCGCAACTACGGTCAGACCTCCAACACCGTCTTCGAGCAGGCT 130
                      ********** *******  ** ******  *******  * *    ******* **** 

consensus_3245#0      GGCACCGTCCCTGCGGAGGGCGAGGGCAAGAAGTCCCTGCTCGTCATCTGCTCTTCCGAC 360
consensus_3245#1      GAGACGAAGCCCACCGAGGGCGAGGGCAAGAAGACGCTCGTCGTGGTCTGCAGCTCCGAC 190
                      *  **    **  * ****************** * **  ****  *****   ******

consensus_3245#0      AAGGGTCTCTGTGGTGGTATCCACTCTGGTCTGTCGCGTTACGTCCGCAAGCAGCTCACC 420
consensus_3245#1      AAGGGTCTCTGCGGTGGTATCCACTCCGGTCTCTCCAGGGCGGTGCGCAAGTTCCT--CC 248
                      *********** ************** ***** **  *    ** ******   **  **

consensus_3245#0      ACCGACGGCCTGCCCAGCGACATCGACATTGCCGTCATCGGCGAGAAGTGCAAGGCCCAG 480
consensus_3245#1      TCGAGCAACC-------CGAGGCCGACCTTGCCATCATCGGCGAGAAGTGCAAGGCCCAG 301
                       *   *  **       ***   **** ***** **************************

consensus_3245#0      ATGAGCAGGAGCAACCCCAAGAACATGGTTCTCAGCTTCTCTGGTGTCGGCAAGGCCGTC 540
consensus_3245#1      CTCAGCCGTTCCAACGGCAAGAACGTCGTCCTCAGCTTCGCCGGTGTCGGAAAGGACGTC 361
                       * *** *   ****  ******* * ** ********* * ******** **** ****

consensus_3245#0      CCGACTTTCGCCGACGCGACCTCCATCGCCGACCAGCTCTGCCTCTTGAACACCCAGTAC 600
consensus_3245#1      CCTACCTTCGCCGATGCTTCCGCCATCGCCGACATGATCACCACCCTCCCGACCGAGTAC 421
                      ** ** ******** **  ** ***********  * **  *  * *    *** *****

consensus_3245#0      GACAGCATCAAGATCCTGTACAACAAGTTCATCAACGCTACCAGCTACGAGCCCACCATC 660
consensus_3245#1      TCCTCCATCAAGATCCTCTACAACAAGTTCCTCAACGCCCAGAGCTACGAGGCCACCCCC 481
                        *  ************ ************ *******    ********* *****  *

consensus_3245#0      ATTGAGGCTTTCTCCGAGGAGGCCATCAAGGAGTCTGCCAACTTCTCTTCCTTCGAGATC 720
consensus_3245#1      ATCGAGGCTTTCTCCGAGGAGGCCATCCAGCAGTCGCCCAACTTCTCTGCTTTCGAGATC 541
                      ** ************************ ** ****  *********** * *********

consensus_3245#0      GACGAGGCTGTCCTCCCCAGCCTCCGCGAGTACGCTCTTGCCAACTCCCTCTTCTGGGCT 780
consensus_3245#1      GACGACGAGGTTCTTGGCAACCTCCGTGAGTACGCGCTCGCCAACTCGCTCTACTGGGCT 601
                      ***** *  ** **   ** ****** ******** ** ******** **** *******

consensus_3245#0      CTTGCCGAGGGCCACGCCTGCGAGCAGTCCGCCCGCCGCAACGCCATGGACAACGCCTCG 840
consensus_3245#1      CTGGCCGAGGGTCACGCATGCGAGCAGTCTGCCCGACGAAACGCCATGGACAACGCCTCC 661
                      ** ******** ***** *********** ***** ** ******************** 

consensus_3245#0      AAGAACGCCGGTGAGATGATCACCAAGTTCCAGATTCTCTTCAACCGTACTCGCCAGGCC 900
consensus_3245#1      AAGAACGCCGGCGACATGATCAACAAGTTCCAGATTCTCTTCAACCGTACCCGTCAAGCC 721
                      *********** ** ******* *************************** ** ** ***

consensus_3245#0      GTCATTACCGGTGAGCTCGTCGAGATTATCACTGGTGCCGCCGCCTCCGAGGAGTAGACG 960
consensus_3245#1      GTCATTACTGGCGAACTCGTTGAAATCATTACTGGTGCGGCTGCTTCCGAGAGCTAGA-- 779
                      ******** ** ** ***** ** ** ** ******** ** ** ******   ****  

consensus_3245#0      TAATCCACGAACAACGGAAGATGTCGGAGCATATGATGTGCAGTTGTATTGAGGAAGAGA 1020
consensus_3245#1      --------GGATGCTGTGAGATGTTAGACTATTTAC----CCAAAACGTCGGCTCGGCTA 827
                              * *    *  ******  **  ** *      *       * *     *  *

consensus_3245#0      GGAGCGAGAAATGTATGTATATAGAGCTGGGATTGAGAAGTGCTCCTGCAATCAATGCTA 1080
consensus_3245#1      TCCGCCATGAGTTAGGCTGTGTAGAATAAAGCT--------------------------- 860
                         ** *  * *     * * ****     * *                           

consensus_3245#0      CAGTAGTT 1088
consensus_3245#1      --------
                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)