These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3245#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1088 fasta sequence [CGCTCACACTCCGCTCATCACTTCACATCTCTCGCCATGTTGTCCACAGCTGCTCGTCCCGCCTTCAGGGCTGGCGCTGCCGCCATGCGCTCGGCGCCCGTCTCCGCCCCTCTCGTCGCTCAGTCCGCCAACTATGCCACTCTCCGTGAGATCGAGGGCCGTCTCAAGTCCATCCGCAACATCGAGAAGATCACCAAGACCATGAAGATTGTCGCCTCCACCAAGCTCACCCGCGCCCAGAGGGCCATGAACGAGTCCATCACCTACGGAAAGACCTCGCAGAAGACCTTCGAGGAGGCCGGCACCGTCCCTGCGGAGGGCGAGGGCAAGAAGTCCCTGCTCGTCATCTGCTCTTCCGACAAGGGTCTCTGTGGTGGTATCCACTCTGGTCTGTCGCGTTACGTCCGCAAGCAGCTCACCACCGACGGCCTGCCCAGCGACATCGACATTGCCGTCATCGGCGAGAAGTGCAAGGCCCAGATGAGCAGGAGCAACCCCAAGAACATGGTTCTCAGCTTCTCTGGTGTCGGCAAGGCCGTCCCGACTTTCGCCGACGCGACCTCCATCGCCGACCAGCTCTGCCTCTTGAACACCCAGTACGACAGCATCAAGATCCTGTACAACAAGTTCATCAACGCTACCAGCTACGAGCCCACCATCATTGAGGCTTTCTCCGAGGAGGCCATCAAGGAGTCTGCCAACTTCTCTTCCTTCGAGATCGACGAGGCTGTCCTCCCCAGCCTCCGCGAGTACGCTCTTGCCAACTCCCTCTTCTGGGCTCTTGCCGAGGGCCACGCCTGCGAGCAGTCCGCCCGCCGCAACGCCATGGACAACGCCTCGAAGAACGCCGGTGAGATGATCACCAAGTTCCAGATTCTCTTCAACCGTACTCGCCAGGCCGTCATTACCGGTGAGCTCGTCGAGATTATCACTGGTGCCGCCGCCTCCGAGGAGTAGACGTAATCCACGAACAACGGAAGATGTCGGAGCATATGATGTGCAGTTGTATTGAGGAAGAGAGGAGCGAGAAATGTATGTATATAGAGCTGGGATTGAGAAGTGCTCCTGCAATCAATGCTACAGTAGTT] [+] EMBL AK108313 [CGCTCACACTCCGCTCATCACTTCACATCTCTCGCCATGTTGTCCACAGCTGCTCGTCCCGCCTTCAGGGCTGGCGCTGCCGCCATGCGCTCGGCGCCCGTCTCCGCCCCTCTCGTCGCTCAGTCCGCCAACTATGCCACTCTCCGTGAGATCGAGGGCCGTCTCAAGTCCATCCGCAACATCGAGAAGATCACCAAGACCATGAAGATTGTCGCCTCCACCAAGCTCACCCGCGCCCAGAGGGCCATGAACGAGTCCATCACCTACGGAAAGACCTCGCAGAAGACCTTCGAGGAGGCCGGCACCGTCCCTGCGGAGGGCGAGGGCAAGAAGTCCCTGCTCGTCATCTGCTCTTCCGACAAGGGTCTCTGTGGTGGTATCCACTCTGGTCTGTCGCGTTACGTCCGCAAGCAGCTCACCACCGACGGCCTGCCCAGCGACATCGACATTGCCGTCATCGGCGAGAAGTGCAAGGCCCAGATGAGCAGGAGCAACCCCAAGAACATGGTTCTCAGCTTCTCTGGTGTCGGCAAGGCCGTCCCGACTTTCGCCGACGCGACCTCCATCGCCGACCAGCTCTGCCTCTTGAACACCCAGTACGACAGCATCAAGATCCTGTACAACAAGTTCATCAACGCTACCAGCTACGAGCCCACCATCATTGAGGCTTTCTCCGAGGAGGCCATCAAGGAGTCTGCCAACTTCTCTTCCTTCGAGATCGACGAGGCTGTCCTCCCCAGCCTCCGCGAGTACGCTCTTGCCAACTCCCTCTTCTGGGCTCTTGCCGAGGGCCACGCCTGCGAGCAGTCCGCCCGCCGCAACGCCATGGACAACGCCTCGAAGAACGCCGGTGAGATGATCACCAAGTTCCAGATTCTCTTCAACCGTACTCGCCAGGCCGTCATTACCGGTGAGCTCGTCGAGATTATCACTGGTGCCGCCGCCTCCGAGGAGTAGACGTAATCCACGAACAACGGAAGATGTCGGAGCATATGATGTGCAGTTGTATTGAGGAAGAGAGGAGCGAGAAATGTATGTATATAGAGCTGGGATTGAGAAGTGCTCCTGCAATCAATGCTACAGTAGTT] consensusID : consensus_3245#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 860 fasta sequence [GATCCGCAACATCGAGAAAATTACCAAGACGATGAAGATCGTCGCCTCCACCAAGCTCACCCGCGCCCAGAGGGCCATGACCGAGTCCCGCAACTACGGTCAGACCTCCAACACCGTCTTCGAGCAGGCTGAGACGAAGCCCACCGAGGGCGAGGGCAAGAAGACGCTCGTCGTGGTCTGCAGCTCCGACAAGGGTCTCTGCGGTGGTATCCACTCCGGTCTCTCCAGGGCGGTGCGCAAGTTCCTCCTCGAGCAACCCGAGGCCGACCTTGCCATCATCGGCGAGAAGTGCAAGGCCCAGCTCAGCCGTTCCAACGGCAAGAACGTCGTCCTCAGCTTCGCCGGTGTCGGAAAGGACGTCCCTACCTTCGCCGATGCTTCCGCCATCGCCGACATGATCACCACCCTCCCGACCGAGTACTCCTCCATCAAGATCCTCTACAACAAGTTCCTCAACGCCCAGAGCTACGAGGCCACCCCCATCGAGGCTTTCTCCGAGGAGGCCATCCAGCAGTCGCCCAACTTCTCTGCTTTCGAGATCGACGACGAGGTTCTTGGCAACCTCCGTGAGTACGCGCTCGCCAACTCGCTCTACTGGGCTCTGGCCGAGGGTCACGCATGCGAGCAGTCTGCCCGACGAAACGCCATGGACAACGCCTCCAAGAACGCCGGCGACATGATCAACAAGTTCCAGATTCTCTTCAACCGTACCCGTCAAGCCGTCATTACTGGCGAACTCGTTGAAATCATTACTGGTGCGGCTGCTTCCGAGAGCTAGAGGATGCTGTGAGATGTTAGACTATTTACCCAAAACGTCGGCTCGGCTATCCGCCATGAGTTAGGCTGTGTAGAATAAAGCT] [+] EMBL AK109020 [GATCCGCAACATCGAGAAAATTACCAAGACGATGAAGATCGTCGCCTCCACCAAGCTCACCCGCGCCCAGAGGGCCATGACCGAGTCCCGCAACTACGGTCAGACCTCCAACACCGTCTTCGAGCAGGCTGAGACGAAGCCCACCGAGGGCGAGGGCAAGAAGACGCTCGTCGTGGTCTGCAGCTCCGACAAGGGTCTCTGCGGTGGTATCCACTCCGGTCTCTCCAGGGCGGTGCGCAAGTTCCTCCTCGAGCAACCCGAGGCCGACCTTGCCATCATCGGCGAGAAGTGCAAGGCCCAGCTCAGCCGTTCCAACGGCAAGAACGTCGTCCTCAGCTTCGCCGGTGTCGGAAAGGACGTCCCTACCTTCGCCGATGCTTCCGCCATCGCCGACATGATCACCACCCTCCCGACCGAGTACTCCTCCATCAAGATCCTCTACAACAAGTTCCTCAACGCCCAGAGCTACGAGGCCACCCCCATCGAGGCTTTCTCCGAGGAGGCCATCCAGCAGTCGCCCAACTTCTCTGCTTTCGAGATCGACGACGAGGTTCTTGGCAACCTCCGTGAGTACGCGCTCGCCAACTCGCTCTACTGGGCTCTGGCCGAGGGTCACGCATGCGAGCAGTCTGCCCGACGAAACGCCATGGACAACGCCTCCAAGAACGCCGGCGACATGATCAACAAGTTCCAGATTCTCTTCAACCGTACCCGTCAAGCCGTCATTACTGGCGAACTCGTTGAAATCATTACTGGTGCGGCTGCTTCCGAGAGCTAGAGGATGCTGTGAGATGTTAGACTATTTACCCAAAACGTCGGCTCGGCTATCCGCCATGAGTTAGGCTGTGTAGAATAAAGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3245#0 CGCTCACACTCCGCTCATCACTTCACATCTCTCGCCATGTTGTCCACAGCTGCTCGTCCC 60 consensus_3245#1 ------------------------------------------------------------ consensus_3245#0 GCCTTCAGGGCTGGCGCTGCCGCCATGCGCTCGGCGCCCGTCTCCGCCCCTCTCGTCGCT 120 consensus_3245#1 ------------------------------------------------------------ consensus_3245#0 CAGTCCGCCAACTATGCCACTCTCCGTGAGATCGAGGGCCGTCTCAAGTCCATCCGCAAC 180 consensus_3245#1 --------------------------------------------------GATCCGCAAC 10 ********* consensus_3245#0 ATCGAGAAGATCACCAAGACCATGAAGATTGTCGCCTCCACCAAGCTCACCCGCGCCCAG 240 consensus_3245#1 ATCGAGAAAATTACCAAGACGATGAAGATCGTCGCCTCCACCAAGCTCACCCGCGCCCAG 70 ******** ** ******** ******** ****************************** consensus_3245#0 AGGGCCATGAACGAGTCCATCACCTACGGAAAGACCTCGCAGAAGACCTTCGAGGAGGCC 300 consensus_3245#1 AGGGCCATGACCGAGTCCCGCAACTACGGTCAGACCTCCAACACCGTCTTCGAGCAGGCT 130 ********** ******* ** ****** ******* * * ******* **** consensus_3245#0 GGCACCGTCCCTGCGGAGGGCGAGGGCAAGAAGTCCCTGCTCGTCATCTGCTCTTCCGAC 360 consensus_3245#1 GAGACGAAGCCCACCGAGGGCGAGGGCAAGAAGACGCTCGTCGTGGTCTGCAGCTCCGAC 190 * ** ** * ****************** * ** **** ***** ****** consensus_3245#0 AAGGGTCTCTGTGGTGGTATCCACTCTGGTCTGTCGCGTTACGTCCGCAAGCAGCTCACC 420 consensus_3245#1 AAGGGTCTCTGCGGTGGTATCCACTCCGGTCTCTCCAGGGCGGTGCGCAAGTTCCT--CC 248 *********** ************** ***** ** * ** ****** ** ** consensus_3245#0 ACCGACGGCCTGCCCAGCGACATCGACATTGCCGTCATCGGCGAGAAGTGCAAGGCCCAG 480 consensus_3245#1 TCGAGCAACC-------CGAGGCCGACCTTGCCATCATCGGCGAGAAGTGCAAGGCCCAG 301 * * ** *** **** ***** ************************** consensus_3245#0 ATGAGCAGGAGCAACCCCAAGAACATGGTTCTCAGCTTCTCTGGTGTCGGCAAGGCCGTC 540 consensus_3245#1 CTCAGCCGTTCCAACGGCAAGAACGTCGTCCTCAGCTTCGCCGGTGTCGGAAAGGACGTC 361 * *** * **** ******* * ** ********* * ******** **** **** consensus_3245#0 CCGACTTTCGCCGACGCGACCTCCATCGCCGACCAGCTCTGCCTCTTGAACACCCAGTAC 600 consensus_3245#1 CCTACCTTCGCCGATGCTTCCGCCATCGCCGACATGATCACCACCCTCCCGACCGAGTAC 421 ** ** ******** ** ** *********** * ** * * * *** ***** consensus_3245#0 GACAGCATCAAGATCCTGTACAACAAGTTCATCAACGCTACCAGCTACGAGCCCACCATC 660 consensus_3245#1 TCCTCCATCAAGATCCTCTACAACAAGTTCCTCAACGCCCAGAGCTACGAGGCCACCCCC 481 * ************ ************ ******* ********* ***** * consensus_3245#0 ATTGAGGCTTTCTCCGAGGAGGCCATCAAGGAGTCTGCCAACTTCTCTTCCTTCGAGATC 720 consensus_3245#1 ATCGAGGCTTTCTCCGAGGAGGCCATCCAGCAGTCGCCCAACTTCTCTGCTTTCGAGATC 541 ** ************************ ** **** *********** * ********* consensus_3245#0 GACGAGGCTGTCCTCCCCAGCCTCCGCGAGTACGCTCTTGCCAACTCCCTCTTCTGGGCT 780 consensus_3245#1 GACGACGAGGTTCTTGGCAACCTCCGTGAGTACGCGCTCGCCAACTCGCTCTACTGGGCT 601 ***** * ** ** ** ****** ******** ** ******** **** ******* consensus_3245#0 CTTGCCGAGGGCCACGCCTGCGAGCAGTCCGCCCGCCGCAACGCCATGGACAACGCCTCG 840 consensus_3245#1 CTGGCCGAGGGTCACGCATGCGAGCAGTCTGCCCGACGAAACGCCATGGACAACGCCTCC 661 ** ******** ***** *********** ***** ** ******************** consensus_3245#0 AAGAACGCCGGTGAGATGATCACCAAGTTCCAGATTCTCTTCAACCGTACTCGCCAGGCC 900 consensus_3245#1 AAGAACGCCGGCGACATGATCAACAAGTTCCAGATTCTCTTCAACCGTACCCGTCAAGCC 721 *********** ** ******* *************************** ** ** *** consensus_3245#0 GTCATTACCGGTGAGCTCGTCGAGATTATCACTGGTGCCGCCGCCTCCGAGGAGTAGACG 960 consensus_3245#1 GTCATTACTGGCGAACTCGTTGAAATCATTACTGGTGCGGCTGCTTCCGAGAGCTAGA-- 779 ******** ** ** ***** ** ** ** ******** ** ** ****** **** consensus_3245#0 TAATCCACGAACAACGGAAGATGTCGGAGCATATGATGTGCAGTTGTATTGAGGAAGAGA 1020 consensus_3245#1 --------GGATGCTGTGAGATGTTAGACTATTTAC----CCAAAACGTCGGCTCGGCTA 827 * * * ****** ** ** * * * * * * consensus_3245#0 GGAGCGAGAAATGTATGTATATAGAGCTGGGATTGAGAAGTGCTCCTGCAATCAATGCTA 1080 consensus_3245#1 TCCGCCATGAGTTAGGCTGTGTAGAATAAAGCT--------------------------- 860 ** * * * * * **** * * consensus_3245#0 CAGTAGTT 1088 consensus_3245#1 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||