cluster # 3251

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Oryza sativa
cluster # 3251 cluster # 3251 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3251#0 length = 817 sequences # 1

consensus_3251#1 length = 717 sequences # 1

consensusID : consensus_3251#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 817
fasta sequence

                              [GGGGATATATTCATCAATTCTCTTAGCACTTTTTTGTATTACTTTTTCCTACTTGCCCTTCTGCTGGAAATGATGAATTTGACTCATTAAGAGGCACACTCAGCAGGATGAACATCAATCGAACTGATTTATCATTTTGAAGCTGCTGTGCACAACACACTATCAATTATTGAAGGATGCCAATGAAGAACTTAGTATCATTTTAATAGGGAAGAAACATTTGATGATAGGATAGAGTTGAAGACGACTTGACGTGGGTGGTGGGGGTGTACACCCATACCTCCCAGTCTCCCTCTCCGAAAATCGGATAGTTTGATTTTGCAGGCAGCCATTTGAACGCGGAAAGTTGCATGGGATGACAATGAATTTACCTTTCCATGCATACAGACAGAAGATTGGGTGCAAGAAAAGTGAAATACCCCATAGCATATTTGGTTGATTGAATAGTAGACAAATGGTTGGATCTTAGATGCTACTGGAAATGCACATCAGAACTCCATTGCGGTGATTGTTGAAGTGACGGATGGAGTACTATTATATGTTGCCGGAACCATAGGCATTTGTAACTGTTGGGAATTGACAGCCGGGTTAATCTGAGCCATTCAAATCTACTAATAACAGAGNTTATTCCCTGAAAAACTTGGGGTCAACTGAATCCCATGCTCAGCGAGCCGCGAGGTGAAGTGCTACATCGGCCATTCTCTTCCCTCTAGCAGTTGGNGATGATCACATTCGCTCAAAACCGGGGCTTCTTTGAAANAGTTGCAAATAGNTNAATTNCCCACGGTGATGAAGAATGANGCCGTTTGGCTANGGN]

[+] EMBL CA766324             [GGGGATATATTCATCAATTCTCTTAGCACTTTTTTGTATTACTTTTTCCTACTTGCCCTTCTGCTGGAAATGATGAATTTGACTCATTAAGAGGCACACTCAGCAGGATGAACATCAATCGAACTGATTTATCATTTTGAAGCTGCTGTGCACAACACACTATCAATTATTGAAGGATGCCAATGAAGAACTTAGTATCATTTTAATAGGGAAGAAACATTTGATGATAGGATAGAGTTGAAGACGACTTGACGTGGGTGGTGGGGGTGTACACCCATACCTCCCAGTCTCCCTCTCCGAAAATCGGATAGTTTGATTTTGCAGGCAGCCATTTGAACGCGGAAAGTTGCATGGGATGACAATGAATTTACCTTTCCATGCATACAGACAGAAGATTGGGTGCAAGAAAAGTGAAATACCCCATAGCATATTTGGTTGATTGAATAGTAGACAAATGGTTGGATCTTAGATGCTACTGGAAATGCACATCAGAACTCCATTGCGGTGATTGTTGAAGTGACGGATGGAGTACTATTATATGTTGCCGGAACCATAGGCATTTGTAACTGTTGGGAATTGACAGCCGGGTTAATCTGAGCCATTCAAATCTACTAATAACAGAGNTTATTCCCTGAAAAACTTGGGGTCAACTGAATCCCATGCTCAGCGAGCCGCGAGGTGAAGTGCTACATCGGCCATTCTCTTCCCTCTAGCAGTTGGNGATGATCACATTCGCTCAAAACCGGGGCTTCTTTGAAANAGTTGCAAATAGNTNAATTNCCCACGGTGATGAAGAATGANGCCGTTTGGCTANGGN]




>consensus_3251#0
GGGGATATATTCATCAATTCTCTTAGCACTTTTTTGTATTACTTTTTCCTACTTGCCCTT
CTGCTGGAAATGATGAATTTGACTCATTAAGAGGCACACTCAGCAGGATGAACATCAATC
GAACTGATTTATCATTTTGAAGCTGCTGTGCACAACACACTATCAATTATTGAAGGATGC
CAATGAAGAACTTAGTATCATTTTAATAGGGAAGAAACATTTGATGATAGGATAGAGTTG
AAGACGACTTGACGTGGGTGGTGGGGGTGTACACCCATACCTCCCAGTCTCCCTCTCCGA
AAATCGGATAGTTTGATTTTGCAGGCAGCCATTTGAACGCGGAAAGTTGCATGGGATGAC
AATGAATTTACCTTTCCATGCATACAGACAGAAGATTGGGTGCAAGAAAAGTGAAATACC
CCATAGCATATTTGGTTGATTGAATAGTAGACAAATGGTTGGATCTTAGATGCTACTGGA
AATGCACATCAGAACTCCATTGCGGTGATTGTTGAAGTGACGGATGGAGTACTATTATAT
GTTGCCGGAACCATAGGCATTTGTAACTGTTGGGAATTGACAGCCGGGTTAATCTGAGCC
ATTCAAATCTACTAATAACAGAGNTTATTCCCTGAAAAACTTGGGGTCAACTGAATCCCA
TGCTCAGCGAGCCGCGAGGTGAAGTGCTACATCGGCCATTCTCTTCCCTCTAGCAGTTGG
NGATGATCACATTCGCTCAAAACCGGGGCTTCTTTGAAANAGTTGCAAATAGNTNAATTN
CCCACGGTGATGAAGAATGANGCCGTTTGGCTANGGN

consensusID : consensus_3251#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 717
fasta sequence

                              [GCATACACACATAAGATTGGGTGCAAGAAAAGTGAAATACCCCATAGCATATTTGGGTGATTGAATAGTAGACAAATGGTTGGATCTTAGATGCTACTGGAAATGCACATCACAACTCCATTGCGGTGATTGTTGAGTTGAGTGCTTTAGATTCTGTAACAGCACTTGCTATTGTGTGGGTTGGCAAGGGTATTTCATGGGTTCTTCAATTTTGGCTTATTTGAATGGCCAGAGGCAAAATCTGAGTACTCCATTCATTTATTTAATTGAATCTTACTGCCCATTTCACTTATTTCTGTCAGTAACCAGTGACTACCTACTACTATCGGAACAGTAGCTCTCAAGATTTTGCCCTTTTATTTTTGTATATTTTGATTAGGAAAAAAATTGTGCACATATGCCATTCATTTATTTGAGCTCATTTCAGGAACTTGCTATTTGAAGCATGTTTTTGTTGGCTCTTCAAGTTTCTGTTTGAGTACCTCTGCATGTTTATTTTTTGCTTTTCTCTATAGCAGACATTTCTGGTGTGCTGAATTGCTTTTCTTCTCGCATATATTTGCAAATTTGTTCATTATCCTGTTCTTATGCCTAATAAATGACACCATGGCGGTGACCAAGTACTCAATTTTGTTCACAAGGTAGATGCTACCTTAGCTTATATTTAGTTATGTTATGGAACACTAAAGTGTGTGTGATGCTATGGTCCATAGCAGA]

[+] EMBL CB673659             [GCATACACACATAAGATTGGGTGCAAGAAAAGTGAAATACCCCATAGCATATTTGGGTGATTGAATAGTAGACAAATGGTTGGATCTTAGATGCTACTGGAAATGCACATCACAACTCCATTGCGGTGATTGTTGAGTTGAGTGCTTTAGATTCTGTAACAGCACTTGCTATTGTGTGGGTTGGCAAGGGTATTTCATGGGTTCTTCAATTTTGGCTTATTTGAATGGCCAGAGGCAAAATCTGAGTACTCCATTCATTTATTTAATTGAATCTTACTGCCCATTTCACTTATTTCTGTCAGTAACCAGTGACTACCTACTACTATCGGAACAGTAGCTCTCAAGATTTTGCCCTTTTATTTTTGTATATTTTGATTAGGAAAAAAATTGTGCACATATGCCATTCATTTATTTGAGCTCATTTCAGGAACTTGCTATTTGAAGCATGTTTTTGTTGGCTCTTCAAGTTTCTGTTTGAGTACCTCTGCATGTTTATTTTTTGCTTTTCTCTATAGCAGACATTTCTGGTGTGCTGAATTGCTTTTCTTCTCGCATATATTTGCAAATTTGTTCATTATCCTGTTCTTATGCCTAATAAATGACACCATGGCGGTGACCAAGTACTCAATTTTGTTCACAAGGTAGATGCTACCTTAGCTTATATTTAGTTATGTTATGGAACACTAAAGTGTGTGTGATGCTATGGTCCATAGCAGA]




>consensus_3251#1
GCATACACACATAAGATTGGGTGCAAGAAAAGTGAAATACCCCATAGCATATTTGGGTGA
TTGAATAGTAGACAAATGGTTGGATCTTAGATGCTACTGGAAATGCACATCACAACTCCA
TTGCGGTGATTGTTGAGTTGAGTGCTTTAGATTCTGTAACAGCACTTGCTATTGTGTGGG
TTGGCAAGGGTATTTCATGGGTTCTTCAATTTTGGCTTATTTGAATGGCCAGAGGCAAAA
TCTGAGTACTCCATTCATTTATTTAATTGAATCTTACTGCCCATTTCACTTATTTCTGTC
AGTAACCAGTGACTACCTACTACTATCGGAACAGTAGCTCTCAAGATTTTGCCCTTTTAT
TTTTGTATATTTTGATTAGGAAAAAAATTGTGCACATATGCCATTCATTTATTTGAGCTC
ATTTCAGGAACTTGCTATTTGAAGCATGTTTTTGTTGGCTCTTCAAGTTTCTGTTTGAGT
ACCTCTGCATGTTTATTTTTTGCTTTTCTCTATAGCAGACATTTCTGGTGTGCTGAATTG
CTTTTCTTCTCGCATATATTTGCAAATTTGTTCATTATCCTGTTCTTATGCCTAATAAAT
GACACCATGGCGGTGACCAAGTACTCAATTTTGTTCACAAGGTAGATGCTACCTTAGCTT
ATATTTAGTTATGTTATGGAACACTAAAGTGTGTGTGATGCTATGGTCCATAGCAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3251#0      GGGGATATATTCATCAATTCTCTTAGCACTTTTTTGTATTACTTTTTCCTACTTGCCCTT 60
consensus_3251#1      ----------------------------------------------GCATACACACA-TA 13
                                                                     * ***   *  * 

consensus_3251#0      CTGCTGGAAATGATGAATTTGACTCATTAAGAGGCACACTCAGCAGGATGAACATCAATC 120
consensus_3251#1      AGATTGGGTGCAAGAAAAGTGAAATACCCCATAGCATATTTGGGTGATTGAATAGTAGAC 73
                          ***     *  **  ***   *       *** * *  *  *  **** *  *  *

consensus_3251#0      GAACTGATTTATCATTTTGAAGCTGCTGTGCACAACACACTATCAATTATTGAAGGATGC 180
consensus_3251#1      AAATGGTTGGATC--TTAGATGCTACTGGAAATG-CACATCA-CAACTCCATTGCGGTG- 128
                       **  * *  ***  ** ** *** ***   *   ****  * *** *       * ** 

consensus_3251#0      CAATGAAGAACTTAGTATCATTTTAATAGGGAAGAAACATTTGATGATAGGATAGAGTTG 240
consensus_3251#1      -ATTGTTGAGTTGAGTGC--TTTAGATTCTGTAACAGCACTTGCTATTGTGT--GGGTTG 183
                       * **  **  * ***    ***  **   * *  * ** *** *  *  *   * ****

consensus_3251#0      AAGACGACTTGACGTGGGTGGTGGGGGTGTACACCCATACCTCCCAGTCTCCCTCTCCGA 300
consensus_3251#1      GCAAGGGTATTTCATGGGTTCTTCAATTTTG-GCTTAT----TTGAATGGCCAGAGGCAA 238
                         * *   *  * *****  *     * *   *  **       * *  **     * *

consensus_3251#0      AAATCGGATAGTTTGATTTTGCAGGCAGCC--ATTTGAACGCGGAAAGTTGCATGGGATG 358
consensus_3251#1      AATCTGAGTACTCCATTCATTTATTTAATTGAATCTTACTGCCCATT-TCACTTATTTCT 297
                      **   *  ** *    *  *  *   *     ** * *  **  *   *  * *      

consensus_3251#0      ACAATGAATTTACCTTTCCATGCATACAGACAGAAGATTGGGTGCAAGAAAAGTGAAATA 418
consensus_3251#1      GTCAGTAACCAGTGACTACCTAC-TACTATCGGAACAGTAGCTCTCAAGATTTTGCCCTT 356
                         *  **        * * * * ***   * *** * * * *   *  *   **   * 

consensus_3251#0      CC-CCATAGCATATTTGGTT----GATTGAATAGTAGACAAATGGT-----TGGATCTTA 468
consensus_3251#1      TTATTTTTGTATATTTTGATTAGGAAAAAAATTGTGCACATATGCCATTCATTTATTTGA 416
                            * * ****** * *     *   *** **  *** ***       *  ** * *

consensus_3251#0      GATGCTACTGGAAA--TGCACATCAGAACTCCATTGCGGTGATTGTTGAAGTGACGGATG 526
consensus_3251#1      GCTCATTTCAGGAACTTGCTATTTGAAGCATGTTTTTGTTGGCTCTTCAAGTTTCTGTTT 476
                      * *  *    * **  ***   *   * *    **  * **  * ** ****  * * * 

consensus_3251#0      GAGTACTATTATATGTTGCCGGAACCATAGGCATTTGTAACTGTTGGGAATTGACAGCCG 586
consensus_3251#1      GAGTACCTCTGCATGTT--------TAT---TTTTTGCTTTTCTCTATAGCAGACATTTC 525
                      ******   *  *****         **     ****    * *    *   ****    

consensus_3251#0      GGTTAATCTGAGCCATTCAAATCTACTAATAACAGAGNTTATTCCCTGAAAAACTTGGGG 646
consensus_3251#1      TGGTGTGCTGAATTGCTT-----TTCTTCTCGCATATATT------TGCAAATTTGTTCA 574
                       * *   ****     *      * **  *  ** *  **      ** ***  *     

consensus_3251#0      TCAACTGAATCCCATGCTCAGCGAGCCGCGAGGTGAAGTGCTACATCGGCCATTCTCTTC 706
consensus_3251#1      TTATCCTGTTCTTATGCCTAATAAATGACACCATG--GCGGTG-ACCAAGTACTCAATTT 631
                      * * *    **  ****  *   *    *    **  * * *  * *    * **  ** 

consensus_3251#0      CCTCTAGCAGTTGGNGATGATCACATTCGCTCAAAACCGGGGCTTCTTTGAAANAGTTGC 766
consensus_3251#1      TGTTCACAAGGT--AGATG-CTACCTTAGCTTATATTTAGTTATGTTATGGAACACT--A 686
                        *  *  ** *   ****   ** ** *** * *    *   *  * ** ** * *   

consensus_3251#0      AAATAGNTNAATTNCCCACGGTGATGAAGAATGANGCCGTTTGGCTANGGN 817
consensus_3251#1      AAGTGTGTGTGATGCTATGGTCCATAGCAGA-------------------- 717
                      ** *   *    * *    *   **     *