cluster # 3254

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Oryza sativa
cluster # 3254 cluster # 3254 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3254#0 length = 318 sequences # 1

consensus_3254#1 length = 276 sequences # 1

consensusID : consensus_3254#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 318
fasta sequence

                              [TCCAAATTCCACCACTTTTTATTGTTCTTTTCGTTTTCTTTTTTTTCTTTCATGGAATTATTGGTGTGGTTTTTGTGTTTACTTTTTTTTTTTGTTGTGCTGCTTTGTTTTGGGTCGCAGGAACTGGAGCCTCGGGAGATCAAGGATGTGCTACGATGCATTTTGCATACCATATTCTTCCACAGAACCTTGAGCCTTGTTCGGCCCAAAGACTTTGATTGTGATTTCTTTGAGATTACCTATGTGAGTATTTATCCTGTATAAAGGTCTTGAACTATTTAATGTACTGAATCTATTTTGGGTTTTCTATCTAATGTT]

[+] EMBL CF319316             [TCCAAATTCCACCACTTTTTATTGTTCTTTTCGTTTTCTTTTTTTTCTTTCATGGAATTATTGGTGTGGTTTTTGTGTTTACTTTTTTTTTTTGTTGTGCTGCTTTGTTTTGGGTCGCAGGAACTGGAGCCTCGGGAGATCAAGGATGTGCTACGATGCATTTTGCATACCATATTCTTCCACAGAACCTTGAGCCTTGTTCGGCCCAAAGACTTTGATTGTGATTTCTTTGAGATTACCTATGTGAGTATTTATCCTGTATAAAGGTCTTGAACTATTTAATGTACTGAATCTATTTTGGGTTTTCTATCTAATGTT]




>consensus_3254#0
TCCAAATTCCACCACTTTTTATTGTTCTTTTCGTTTTCTTTTTTTTCTTTCATGGAATTA
TTGGTGTGGTTTTTGTGTTTACTTTTTTTTTTTGTTGTGCTGCTTTGTTTTGGGTCGCAG
GAACTGGAGCCTCGGGAGATCAAGGATGTGCTACGATGCATTTTGCATACCATATTCTTC
CACAGAACCTTGAGCCTTGTTCGGCCCAAAGACTTTGATTGTGATTTCTTTGAGATTACC
TATGTGAGTATTTATCCTGTATAAAGGTCTTGAACTATTTAATGTACTGAATCTATTTTG
GGTTTTCTATCTAATGTT

consensusID : consensus_3254#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 276
fasta sequence

                              [AGCTGAAGGAGCTGGAACTGGAGCCTCGGGAGATCAAGGATGTGCTNAGATGCATTTTGCATACCATATTCTTCCNCAGAACCTTGAGCCTTGTTCGGCCCAAAGACTTTGANTGTNNTTTCTTTGAGATTACCTATGTNAGTATTTATCCTGTATAAAGGTCTTGAACTATTTAATGTANTGAATCNATTTGGGTTTTCTATCTAATGTTTGCTGGCACTAAGCACNTTTCATGGCTATCAAATGAAGTATGAAATTTATTACCTACTGCAAAAA]

[+] EMBL AU166922             [AGCTGAAGGAGCTGGAACTGGAGCCTCGGGAGATCAAGGATGTGCTNAGATGCATTTTGCATACCATATTCTTCCNCAGAACCTTGAGCCTTGTTCGGCCCAAAGACTTTGANTGTNNTTTCTTTGAGATTACCTATGTNAGTATTTATCCTGTATAAAGGTCTTGAACTATTTAATGTANTGAATCNATTTGGGTTTTCTATCTAATGTTTGCTGGCACTAAGCACNTTTCATGGCTATCAAATGAAGTATGAAATTTATTACCTACTGCAAAAA]




>consensus_3254#1
AGCTGAAGGAGCTGGAACTGGAGCCTCGGGAGATCAAGGATGTGCTNAGATGCATTTTGC
ATACCATATTCTTCCNCAGAACCTTGAGCCTTGTTCGGCCCAAAGACTTTGANTGTNNTT
TCTTTGAGATTACCTATGTNAGTATTTATCCTGTATAAAGGTCTTGAACTATTTAATGTA
NTGAATCNATTTGGGTTTTCTATCTAATGTTTGCTGGCACTAAGCACNTTTCATGGCTAT
CAAATGAAGTATGAAATTTATTACCTACTGCAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3254#0      TCCAAATTCCACCACTTTTTATTGTTCTTTTCGTTTTCTTTTTTTTCTTTCATGGAATTA 60
consensus_3254#1      ------------------------------------------------------------
                                                                                  

consensus_3254#0      TTGGTGTGGTTTTTGTGTTTACTTTTTTTTTTTGTTGTGCTGCTTTGTTTTGGGTCGCAG 120
consensus_3254#1      ----------------------------------------------AGCTGAAGGAGCTG 14
                                                                       *   *  ** *

consensus_3254#0      GAACTGGAGCCTCGGGAGATCAAGGATGTGCTACGATGCATTTTGCATACCATATTCTTC 180
consensus_3254#1      GAACTGGAGCCTCGGGAGATCAAGGATGTGCTNAGATGCATTTTGCATACCATATTCTTC 74
                      ********************************  **************************

consensus_3254#0      CACAGAACCTTGAGCCTTGTTCGGCCCAAAGACTTTGATTGTGATTTCTTTGAGATTACC 240
consensus_3254#1      CNCAGAACCTTGAGCCTTGTTCGGCCCAAAGACTTTGANTGTNNTTTCTTTGAGATTACC 134
                      * ************************************ ***  ****************

consensus_3254#0      TATGTGAGTATTTATCCTGTATAAAGGTCTTGAACTATTTAATGTACTGAATCTATTTTG 300
consensus_3254#1      TATGTNAGTATTTATCCTGTATAAAGGTCTTGAACTATTTAATGTANTGAATCNATTT-G 193
                      ***** **************************************** ****** **** *

consensus_3254#0      GGTTTTCTATCTAATGTT------------------------------------------ 318
consensus_3254#1      GGTTTTCTATCTAATGTTTGCTGGCACTAAGCACNTTTCATGGCTATCAAATGAAGTATG 253
                      ******************                                          

consensus_3254#0      -----------------------
consensus_3254#1      AAATTTATTACCTACTGCAAAAA 276