These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_327#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2133 fasta sequence [CCGGATCAATCCCCTTCTTCCTCCCGAGGCGAGGGTTTTGGCGAGGAGATCGAGCAGAGGATCTCTCTAGCCTCCCGCTCCGCCCAATCCACCGTAGCCGCGGCCCATTTCGTTGTCCGTCCAGCCGCGCGCCGCCGTGCCTTTTTCTTGGTTGCTGCGGTTCCAAGAAACCCCCGCCATGGCCTCCGATGGTAGTTTCTTCCGATACGGTGAGCGCCAGATAGCAGCTAAACCTGAAGATTGCCCAGCAATGTCATCAATGTTGTCATTGGAGGATCTCCCGGATGCATTGCTCGCAGAGATTGTAAAGAGGATTACCAACACAAGTGACCTGAAGTCCATTTCCCTTGTGTCAAAGCGTCTGTACACTATCGAGGCGGAGCAAAGAAGTTCTATCCGTGTTGGCTCTGACCTTTGTCCAGCGATAGATACCTTGTCAGCACTCTGTTCCCGATTCCCCAATTTGTTGGAAGTAGAGATGGACTACTCTGGTTGGAAATTTCACTGGAATCTGCTAGAAAAACATATTTTCTCATTGCACTTCCCTGTCCTGCGTGATCTCACCTTATACATTGATGATATTCGTATGGGTTGTCTAGCTTCTTGCAAAAATTTGATGTCCCTCAGGTTGAACTCTGTATCAGCGATAGGCTCATGTGGACTTCTCTCGGTGGCTGTTGGTTGCAAGAATTTAACTTCTCTCCACATTATTAAGTGCAACCATATTGTTGGCAGTGATAAGTGGCTGGAGTACATTGGCAGTGCTGGGTCACTGGAAGAACTTGTAGTGAAGAACTGCAAGAGAATCAGCCAGTATGATCTCCTAAAATTTGGCCCTGGATGGATGAAGCTCAAGAAGTTCGAGTTCAAGTTCAAGAGAAGTTTCAACACATATGAACCTCGTGACCCCTGTTATGTGGATAACTATCAGTATGGATATGATTTCTGCTGTGAAAGTTTGAGGGATGTCACTTTGGCTACGATTGTAACTAAACCAGAGATAGGACTTCGCTGTCTCCTGACAAAGTGCAAAGCATTAGAGAGACTCTGCCTTCACTATGTAATTGGCATAAGTGATCATGACATCATTACAATCTCCCAGAACTGCAGCAACCTTAGAAGCATCTCACTTTCTCAAGAGATGCTGCTCTGTGAAATACCTGGAGGCACAGGCGTAATGGCTAGGACACCACTGACTGATGACAGCCTCAATGCTCTAGCCCTGAGATCTCATATGCTTGAAGCTGTTGAGCTTATGTTTTATGGTTGTGCTCCTGATTGGCCATCTGAGATAGCCTTCACACAGGATGGCCTTGTGACACTCCTCCAGTCCTGTCCGATTCGTCATCTCGTGCTACGTGGTGCTAACTTCTTTGATGATGAAGGGATGGAGGCTCTCTCATGTGCACAATTCCTGGAGACACTGGAGCTTATGCAATGTGTTGCGGTAACTGATGTCGGGATGCGCTTTCTTGCACAAAGCCCATGTTTGAAGAATCTCACGCTGCAGATGTGTTACGAGGTTACTGATGATGGAGTGTGTGAGGTGGCTCATGCACGGGATTTGGAGTCTCTCACTGTTGAAAGCTGTAATCAGATTTCTGTAGAAGCTTTGCATGGGGCCGCCAAATCCGTTCACTACAAAGTTGATTGCCCAAGCTACTACGATCGATATAAAGATTAGGTACTACGTGTGATGAGTGAAAACTGGGATCATTTACTGCAACTGTGCTGTATACCATATTATATGATCTTGCCAATAACAATCTCAATTTGGCCTGTAAGCAGTACTACTGTTTAGCTTTGGGAGTGTCTGCAACTATCAACTCTTTTGTCGACGAAGCGCTACAGAAAGGTGGAAGTGGAACTACTGCCAATCGTCTCAGACTTTCAACATTTTCCTTTTGTGTATGCCACCTTCATTGTTATGGCTTACAAGAAACGTTTCAGGATATAATTGTGCCTACATCTTTAACAGACGATTATATGTTTCTATCACGTTTTGTTTCTGTGCCTACTCTAACCTCTGTGAACTGATCTTTTCGCTTCCTACAAAACTGGTCCGAAAGGCATTGGATCATTGGGTGTAGTCAACAATGTACACTGCATTACCTGCTTATAGTACAATATAAG] [+] EMBL AK073020 [CCGGATCAATCCCCTTCTTCCTCCCGAGGCGAGGGTTTTGGCGAGGAGATCGAGCAGAGGATCTCTCTAGCCTCCCGCTCCGCCCAATCCACCGTAGCCGCGGCCCATTTCGTTGTCCGTCCAGCCGCGCGCCGCCGTGCCTTTTTCTTGGTTGCTGCGGTTCCAAGAAACCCCCGCCATGGCCTCCGATGGTAGTTTCTTCCGATACGGTGAGCGCCAGATAGCAGCTAAACCTGAAGATTGCCCAGCAATGTCATCAATGTTGTCATTGGAGGATCTCCCGGATGCATTGCTCGCAGAGATTGTAAAGAGGATTACCAACACAAGTGACCTGAAGTCCATTTCCCTTGTGTCAAAGCGTCTGTACACTATCGAGGCGGAGCAAAGAAGTTCTATCCGTGTTGGCTCTGACCTTTGTCCAGCGATAGATACCTTGTCAGCACTCTGTTCCCGATTCCCCAATTTGTTGGAAGTAGAGATGGACTACTCTGGTTGGAAATTTCACTGGAATCTGCTAGAAAAACATATTTTCTCATTGCACTTCCCTGTCCTGCGTGATCTCACCTTATACATTGATGATATTCGTATGGGTTGTCTAGCTTCTTGCAAAAATTTGATGTCCCTCAGGTTGAACTCTGTATCAGCGATAGGCTCATGTGGACTTCTCTCGGTGGCTGTTGGTTGCAAGAATTTAACTTCTCTCCACATTATTAAGTGCAACCATATTGTTGGCAGTGATAAGTGGCTGGAGTACATTGGCAGTGCTGGGTCACTGGAAGAACTTGTAGTGAAGAACTGCAAGAGAATCAGCCAGTATGATCTCCTAAAATTTGGCCCTGGATGGATGAAGCTCAAGAAGTTCGAGTTCAAGTTCAAGAGAAGTTTCAACACATATGAACCTCGTGACCCCTGTTATGTGGATAACTATCAGTATGGATATGATTTCTGCTGTGAAAGTTTGAGGGATGTCACTTTGGCTACGATTGTAACTAAACCAGAGATAGGACTTCGCTGTCTCCTGACAAAGTGCAAAGCATTAGAGAGACTCTGCCTTCACTATGTAATTGGCATAAGTGATCATGACATCATTACAATCTCCCAGAACTGCAGCAACCTTAGAAGCATCTCACTTTCTCAAGAGATGCTGCTCTGTGAAATACCTGGAGGCACAGGCGTAATGGCTAGGACACCACTGACTGATGACAGCCTCAATGCTCTAGCCCTGAGATCTCATATGCTTGAAGCTGTTGAGCTTATGTTTTATGGTTGTGCTCCTGATTGGCCATCTGAGATAGCCTTCACACAGGATGGCCTTGTGACACTCCTCCAGTCCTGTCCGATTCGTCATCTCGTGCTACGTGGTGCTAACTTCTTTGATGATGAAGGGATGGAGGCTCTCTCATGTGCACAATTCCTGGAGACACTGGAGCTTATGCAATGTGTTGCGGTAACTGATGTCGGGATGCGCTTTCTTGCACAAAGCCCATGTTTGAAGAATCTCACGCTGCAGATGTGTTACGAGGTTACTGATGATGGAGTGTGTGAGGTGGCTCATGCACGGGATTTGGAGTCTCTCACTGTTGAAAGCTGTAATCAGATTTCTGTAGAAGCTTTGCATGGGGCCGCCAAATCCGTTCACTACAAAGTTGATTGCCCAAGCTACTACGATCGATATAAAGATTAGGTACTACGTGTGATGAGTGAAAACTGGGATCATTTACTGCAACTGTGCTGTATACCATATTATATGATCTTGCCAATAACAATCTCAATTTGGCCTGTAAGCAGTACTACTGTTTAGCTTTGGGAGTGTCTGCAACTATCAACTCTTTTGTCGACGAAGCGCTACAGAAAGGTGGAAGTGGAACTACTGCCAATCGTCTCAGACTTTCAACATTTTCCTTTTGTGTATGCCACCTTCATTGTTATGGCTTACAAGAAACGTTTCAGGATATAATTGTGCCTACATCTTTAACAGACGATTATATGTTTCTATCACGTTTTGTTTCTGTGCCTACTCTAACCTCTGTGAACTGATCTTTTCGCTTCCTACAAAACTGGTCCGAAAGGCATTGGATCATTGGGTGTAGTCAACAATGTACACTGCATTACCTGCTTATAGTACAATATAAG] consensusID : consensus_327#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [CCTTCCATGGCTTCCCGGATCAATCCCCTTTCTTCCTCCCGAGGCGAGGGTTTTGGCGAGGAGATCGAGCAGAGGACCTCTCTAGCCTCNCGCTCCGCCCAATCAACNGTAGCCGCGGCCCATTTCGTTGTCCGTCCAGCCGCGCGCCGCCGTGCCTTTTTCTTGGCTGCTGCGGTTCCAAGAAACCCCCGCCATGGCCTCCGATGGTAGTTTCTTCCGATACGGTGGTACTACGTGTGATGAGTGAAAACTGGGATCATTTACTGCAACTGTGCTGTATACCATATTATATGATCTTGCCAATAACAATCTCAATTTGGCCTGTAAGCAGTACTACTGTTTAGCTTTGGGAGTGTCTGCAACTATCAACTCTTTTGTCGACGAAGCGCTACAGAAAGGTGGAAGTGGAACTACTGCCAATCGTCTCAGACTTTCAACATTTTCCTTTTGTGTATGCCACCTTCATTGTTATGGCTTACAAGAAACGTTTCAGGATATAGTTGTGCCTACATCTTTAACAGACGATTATATGTTTCTATCACGTTTTGTTTCTGTGCCTACTCTAACCTCTGTGAACTGATCTTTTCGCTTCCTACAAAACTGGTCCGAAAGGCATTGGATCATTGGGTGTAGTCAACAATGTACACTGCATTACCTGCTTATAGTACAATATAAGATGTTTATTCAAAAAAA] [-] EMBL CA760419 [CCTTCCATGGCTTCCCGGATCAATCCCCTTTCTTCCTCCCGAGGCGAGGGTTTTGGCGAGGAGATCGAGCAGAGGACCTCTCTAGCCTCNCGCTCCGCCCAATCAACNGTAGCCGCGGCCCATTTCGTTGTCCGTCCAGCCGCGCGCCGCCGTGCCTTTTTCTTGGCTGCTGCGGTTCCAAGAAACCCCCGCCATGGCCTCCGATGGTAGTTTCTTCCGATACGGTGGTACTACGTGTGATGAGTGAAAACTGGGATCATTTACTGCAACTGTGCTGTATACCATATTATATGATCTTGCCAATAACAATCTCAATTTGGCCTGTAAGCAGTACTACTGTTTAGCTTTGGGAGTGTCTGCAACTATCAACTCTTTTGTCGACGAAGCGCTACAGAAAGGTGGAAGTGGAACTACTGCCAATCGTCTCAGACTTTCAACATTTTCCTTTTGTGTATGCCACCTTCATTGTTATGGCTTACAAGAAACGTTTCAGGATATAGTTGTGCCTACATCTTTAACAGACGATTATATGTTTCTATCACGTTTTGTTTCTGTGCCTACTCTAACCTCTGTGAACTGATCTTTTCGCTTCCTACAAAACTGGTCCGAAAGGCATTGGATCATTGGGTGTAGTCAACAATGTACACTGCATTACCTGCTTATAGTACAATATAAGATGTTTATTCAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_327#0 CCGGATCAATCCCCTTCTTCCTCCCGAGGCGAGGGTTTTGGCGAGGAGATCGAGCAGAGG 60 consensus_327#1 ------------------------------------------------------------ consensus_327#0 ATCTCTCTAGCCTCCCGCTCCGCCCAATCCACCGTAGCCGCGGCCCATTTCGTTGTCCGT 120 consensus_327#1 ------------------------------------------------------------ consensus_327#0 CCAGCCGCGCGCCGCCGTGCCTTTTTCTTGGTTGCTGCGGTTCCAAGAAACCCCCGCCAT 180 consensus_327#1 ------------------------------------------------------------ consensus_327#0 GGCCTCCGATGGTAGTTTCTTCCGATACGGTGAGCGCCAGATAGCAGCTAAACCTGAAGA 240 consensus_327#1 ------------------------------------------------------------ consensus_327#0 TTGCCCAGCAATGTCATCAATGTTGTCATTGGAGGATCTCCCGGATGCATTGCTCGCAGA 300 consensus_327#1 ------------------------------------------------------------ consensus_327#0 GATTGTAAAGAGGATTACCAACACAAGTGACCTGAAGTCCATTTCCCTTGTGTCAAAGCG 360 consensus_327#1 ------------------------------------------------------------ consensus_327#0 TCTGTACACTATCGAGGCGGAGCAAAGAAGTTCTATCCGTGTTGGCTCTGACCTTTGTCC 420 consensus_327#1 ------------------------------------------------------------ consensus_327#0 AGCGATAGATACCTTGTCAGCACTCTGTTCCCGATTCCCCAATTTGTTGGAAGTAGAGAT 480 consensus_327#1 ------------------------------------------------------------ consensus_327#0 GGACTACTCTGGTTGGAAATTTCACTGGAATCTGCTAGAAAAACATATTTTCTCATTGCA 540 consensus_327#1 ------------------------------------------------------------ consensus_327#0 CTTCCCTGTCCTGCGTGATCTCACCTTATACATTGATGATATTCGTATGGGTTGTCTAGC 600 consensus_327#1 ------------------------------------------------------------ consensus_327#0 TTCTTGCAAAAATTTGATGTCCCTCAGGTTGAACTCTGTATCAGCGATAGGCTCATGTGG 660 consensus_327#1 ------------------------------------------------------------ consensus_327#0 ACTTCTCTCGGTGGCTGTTGGTTGCAAGAATTTAACTTCTCTCCACATTATTAAGTGCAA 720 consensus_327#1 ------------------------------------------------------------ consensus_327#0 CCATATTGTTGGCAGTGATAAGTGGCTGGAGTACATTGGCAGTGCTGGGTCACTGGAAGA 780 consensus_327#1 ------------------------------------------------------------ consensus_327#0 ACTTGTAGTGAAGAACTGCAAGAGAATCAGCCAGTATGATCTCCTAAAATTTGGCCCTGG 840 consensus_327#1 ------------------------------------------------------------ consensus_327#0 ATGGATGAAGCTCAAGAAGTTCGAGTTCAAGTTCAAGAGAAGTTTCAACACATATGAACC 900 consensus_327#1 ------------------------------------------------------------ consensus_327#0 TCGTGACCCCTGTTATGTGGATAACTATCAGTATGGATATGATTTCTGCTGTGAAAGTTT 960 consensus_327#1 ------------------------------------------------------------ consensus_327#0 GAGGGATGTCACTTTGGCTACGATTGTAACTAAACCAGAGATAGGACTTCGCTGTCTCCT 1020 consensus_327#1 ------------------------------------------------------------ consensus_327#0 GACAAAGTGCAAAGCATTAGAGAGACTCTGCCTTCACTATGTAATTGGCATAAGTGATCA 1080 consensus_327#1 ------------------------------------------------------------ consensus_327#0 TGACATCATTACAATCTCCCAGAACTGCAGCAACCTTAGAAGCATCTCACTTTCTCAAGA 1140 consensus_327#1 ------------------------------------------------------------ consensus_327#0 GATGCTGCTCTGTGAAATACCTGGAGGCACAGGCGTAATGGCTAGGACACCACTGACTGA 1200 consensus_327#1 ------------------------------------------------------------ consensus_327#0 TGACAGCCTCAATGCTCTAGCCCTGAGATCTCATATGCTTGAAGCTGTTGAGCTTATGTT 1260 consensus_327#1 ------------------------------------------------------------ consensus_327#0 TTATGGTTGTGCTCCTGATTGGCCATCTGAGATAGCCTTCACACAGGATGGCCTTGTGAC 1320 consensus_327#1 ------------------------------------------------------------ consensus_327#0 ACTCCTCCAGTCCTGTCCGATTCGTCATCTCGTGCTACGTGGTGCTAACTTCTTTGATGA 1380 consensus_327#1 ------------------------------------------------------------ consensus_327#0 TGAAGGGATGGAGGCTCTCTCATGTGCACAATTCCTGGAGACACTGGAGCTTATGCAATG 1440 consensus_327#1 ----------------------------------------------------------CC 2 consensus_327#0 TGTTGCGGTAACTGATGTCGGGATGCGCTTTCTTGCACAAAGCCCATGTTTGAAGAATCT 1500 consensus_327#1 TTCCATGGCTTCCCGGATCAATCCCCTTTCTTCCTCCCGAGGCGAGGGTTTTGGCGAGGA 62 * ** * ** * * * * * * ** **** * consensus_327#0 CACGCTGCAGATGTGTTACGAGGTTACTGATGATGGAGTGTGTGAGGTGGCTCATGCACG 1560 consensus_327#1 GATCGAGCAGAGGACCTCTCTAGCCTCNCGCTCCGCCCAATCAACNGTAGCCGCGGCCCA 122 * ***** * * * * * * ** ** ** * consensus_327#0 GGATTTGGAGTCTCTCACTGTTGAAAGCTGTAATCAGATTTCTGTAGAAGCTTTGCATGG 1620 consensus_327#1 --TTTCGTTGTCCGTC-CAGCCGCGCGCCGCCGTGCCTTTTTCTTGGCTGCT----GCGG 175 ** * *** ** * * * ** * * *** * * *** ** consensus_327#0 GGCCGCCAAATCCGTTCACTACAAAGTTGATTGCCCAAGCTACTACGATCGATATAAAGA 1680 consensus_327#1 TTCCAAGAAACCC--CCGCCATGGCCTCCGATGGT--AGTTTCTTC---CGATACGGTG- 227 ** *** ** * * * * ** ** * ** * ***** * consensus_327#0 TTAGGTACTACGTGTGATGAGTGAAAACTGGGATCATTTACTGCAACTGTGCTGTATACC 1740 consensus_327#1 ----GTACTACGTGTGATGAGTGAAAACTGGGATCATTTACTGCAACTGTGCTGTATACC 283 ******************************************************** consensus_327#0 ATATTATATGATCTTGCCAATAACAATCTCAATTTGGCCTGTAAGCAGTACTACTGTTTA 1800 consensus_327#1 ATATTATATGATCTTGCCAATAACAATCTCAATTTGGCCTGTAAGCAGTACTACTGTTTA 343 ************************************************************ consensus_327#0 GCTTTGGGAGTGTCTGCAACTATCAACTCTTTTGTCGACGAAGCGCTACAGAAAGGTGGA 1860 consensus_327#1 GCTTTGGGAGTGTCTGCAACTATCAACTCTTTTGTCGACGAAGCGCTACAGAAAGGTGGA 403 ************************************************************ consensus_327#0 AGTGGAACTACTGCCAATCGTCTCAGACTTTCAACATTTTCCTTTTGTGTATGCCACCTT 1920 consensus_327#1 AGTGGAACTACTGCCAATCGTCTCAGACTTTCAACATTTTCCTTTTGTGTATGCCACCTT 463 ************************************************************ consensus_327#0 CATTGTTATGGCTTACAAGAAACGTTTCAGGATATAATTGTGCCTACATCTTTAACAGAC 1980 consensus_327#1 CATTGTTATGGCTTACAAGAAACGTTTCAGGATATAGTTGTGCCTACATCTTTAACAGAC 523 ************************************ *********************** consensus_327#0 GATTATATGTTTCTATCACGTTTTGTTTCTGTGCCTACTCTAACCTCTGTGAACTGATCT 2040 consensus_327#1 GATTATATGTTTCTATCACGTTTTGTTTCTGTGCCTACTCTAACCTCTGTGAACTGATCT 583 ************************************************************ consensus_327#0 TTTCGCTTCCTACAAAACTGGTCCGAAAGGCATTGGATCATTGGGTGTAGTCAACAATGT 2100 consensus_327#1 TTTCGCTTCCTACAAAACTGGTCCGAAAGGCATTGGATCATTGGGTGTAGTCAACAATGT 643 ************************************************************ consensus_327#0 ACACTGCATTACCTGCTTATAGTACAATATAAG----------------- 2133 consensus_327#1 ACACTGCATTACCTGCTTATAGTACAATATAAGATGTTTATTCAAAAAAA 693 ********************************* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||