cluster # 3272

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Oryza sativa
cluster # 3272 cluster # 3272 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3272#0 length = 595 sequences # 1

consensus_3272#1 length = 444 sequences # 1

consensusID : consensus_3272#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 595
fasta sequence

                              [CATCTTTGTACAAGTTGTGTCCAAAAAGCAGCTGGGTACCCGTCCGGNATTTCCCGGGGATATCGTCGACCCACGCGGTCCGGGATATTCCTNCGTGANTTGTGCACTGTCGAGAAGNTTCTCATATGCTTCCGACCATTTGTTGGTTTTCGTGAGGTGAGACTTGGTAAGCAAGAACGCAAGACATCCTGGTGGGGATGCCCATTCTACTGCTGTTTTGTTGATTTTGAAACTGCTAGTCATAGCTGCTGATTGCTATGGATGGCTGTGTGCAGAGGCTACAATTCGATGAACATGATCCGCAATTCACCCCATTTACGGCTCCAGTTTGCTCGTTTTACTGGCCCCAGGGGAGGTTCAGGACCTGGTGGTGTCGTGTTAGGCGTTAAGTTGTTCGTCCTGTTTATCAGGCATGATCACATCGAATGTTCAAGTGAAATGATGATAGTTCGTTGGTCGCTCTAGATATATTACTCCATAGTGCTAGGATTGGTAACCTTCTGTTGTTCCAAGTNCCACTTTGGTGCCTTGGCTTTGTGAGATGCTTTCTGACTTAACTAGTTATTAAACATCAAGCTGAACACCACAAAAAAAA]

[+] EMBL BI806350             [CATCTTTGTACAAGTTGTGTCCAAAAAGCAGCTGGGTACCCGTCCGGNATTTCCCGGGGATATCGTCGACCCACGCGGTCCGGGATATTCCTNCGTGANTTGTGCACTGTCGAGAAGNTTCTCATATGCTTCCGACCATTTGTTGGTTTTCGTGAGGTGAGACTTGGTAAGCAAGAACGCAAGACATCCTGGTGGGGATGCCCATTCTACTGCTGTTTTGTTGATTTTGAAACTGCTAGTCATAGCTGCTGATTGCTATGGATGGCTGTGTGCAGAGGCTACAATTCGATGAACATGATCCGCAATTCACCCCATTTACGGCTCCAGTTTGCTCGTTTTACTGGCCCCAGGGGAGGTTCAGGACCTGGTGGTGTCGTGTTAGGCGTTAAGTTGTTCGTCCTGTTTATCAGGCATGATCACATCGAATGTTCAAGTGAAATGATGATAGTTCGTTGGTCGCTCTAGATATATTACTCCATAGTGCTAGGATTGGTAACCTTCTGTTGTTCCAAGTNCCACTTTGGTGCCTTGGCTTTGTGAGATGCTTTCTGACTTAACTAGTTATTAAACATCAAGCTGAACACCACAAAAAAAA]




>consensus_3272#0
CATCTTTGTACAAGTTGTGTCCAAAAAGCAGCTGGGTACCCGTCCGGNATTTCCCGGGGA
TATCGTCGACCCACGCGGTCCGGGATATTCCTNCGTGANTTGTGCACTGTCGAGAAGNTT
CTCATATGCTTCCGACCATTTGTTGGTTTTCGTGAGGTGAGACTTGGTAAGCAAGAACGC
AAGACATCCTGGTGGGGATGCCCATTCTACTGCTGTTTTGTTGATTTTGAAACTGCTAGT
CATAGCTGCTGATTGCTATGGATGGCTGTGTGCAGAGGCTACAATTCGATGAACATGATC
CGCAATTCACCCCATTTACGGCTCCAGTTTGCTCGTTTTACTGGCCCCAGGGGAGGTTCA
GGACCTGGTGGTGTCGTGTTAGGCGTTAAGTTGTTCGTCCTGTTTATCAGGCATGATCAC
ATCGAATGTTCAAGTGAAATGATGATAGTTCGTTGGTCGCTCTAGATATATTACTCCATA
GTGCTAGGATTGGTAACCTTCTGTTGTTCCAAGTNCCACTTTGGTGCCTTGGCTTTGTGA
GATGCTTTCTGACTTAACTAGTTATTAAACATCAAGCTGAACACCACAAAAAAAA

consensusID : consensus_3272#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 444
fasta sequence

                              [GTGAGGTGAGACTTGTAAGCAAAGAAGCAAGACATCCTGGTGGGGATCCAATTCTACTCTGTTTTGTTGATTTTGAAACTGCTAGTCAAGCTGCTATTGCTATGGATGCTTTGCAAGGCTACAAATTCGATGAACATGATCGCAATTCACCCCATTTACGGCTCCAGTTTGCTCGTTTTACTGGCCCCAGGGGAGGTTCAGGACCTGGTGGTGGTCGTGTTAGGCGTTAAGTTGTTCGTCCTTTTATCAGGCATGATCACATCGAATGTTCAAGTGAAATGATGATAGTTCGTTGGTCGCTCTAGATATATTACTCCATAGTGCTAGGATTGGTAACCTTCTGTTGTTCCAAGTTCCAACTTTGGTGCCTTGGCTTTGTGAGATGCTTTCTGACATTAACTAGTTATTAAACATCAAAGCTGAAAACAATTCGTGGCAAAAAAA]

[+] EMBL AU172429             [GTGAGGTGAGACTTGTAAGCAAAGAAGCAAGACATCCTGGTGGGGATCCAATTCTACTCTGTTTTGTTGATTTTGAAACTGCTAGTCAAGCTGCTATTGCTATGGATGCTTTGCAAGGCTACAAATTCGATGAACATGATCGCAATTCACCCCATTTACGGCTCCAGTTTGCTCGTTTTACTGGCCCCAGGGGAGGTTCAGGACCTGGTGGTGGTCGTGTTAGGCGTTAAGTTGTTCGTCCTTTTATCAGGCATGATCACATCGAATGTTCAAGTGAAATGATGATAGTTCGTTGGTCGCTCTAGATATATTACTCCATAGTGCTAGGATTGGTAACCTTCTGTTGTTCCAAGTTCCAACTTTGGTGCCTTGGCTTTGTGAGATGCTTTCTGACATTAACTAGTTATTAAACATCAAAGCTGAAAACAATTCGTGGCAAAAAAA]




>consensus_3272#1
GTGAGGTGAGACTTGTAAGCAAAGAAGCAAGACATCCTGGTGGGGATCCAATTCTACTCT
GTTTTGTTGATTTTGAAACTGCTAGTCAAGCTGCTATTGCTATGGATGCTTTGCAAGGCT
ACAAATTCGATGAACATGATCGCAATTCACCCCATTTACGGCTCCAGTTTGCTCGTTTTA
CTGGCCCCAGGGGAGGTTCAGGACCTGGTGGTGGTCGTGTTAGGCGTTAAGTTGTTCGTC
CTTTTATCAGGCATGATCACATCGAATGTTCAAGTGAAATGATGATAGTTCGTTGGTCGC
TCTAGATATATTACTCCATAGTGCTAGGATTGGTAACCTTCTGTTGTTCCAAGTTCCAAC
TTTGGTGCCTTGGCTTTGTGAGATGCTTTCTGACATTAACTAGTTATTAAACATCAAAGC
TGAAAACAATTCGTGGCAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3272#0      CATCTTTGTACAAGTTGTGTCCAAAAAGCAGCTGGGTACCCGTCCGGNATTTCCCGGGGA 60
consensus_3272#1      ------------------------------------------------------------
                                                                                  

consensus_3272#0      TATCGTCGACCCACGCGGTCCGGGATATTCCTNCGTGANTTGTGCACTGTCGAGAAGNTT 120
consensus_3272#1      ------------------------------------------------------------
                                                                                  

consensus_3272#0      CTCATATGCTTCCGACCATTTGTTGGTTTTCGTGAGGTGAGACTTGGTAAGCAAGAACGC 180
consensus_3272#1      -------------------------------GTGAGGTGAGACTTG-TAAGCAAAGAAGC 28
                                                     *************** *******  * **

consensus_3272#0      AAGACATCCTGGTGGGGATGCCCATTCTACTGCTGTTTTGTTGATTTTGAAACTGCTAGT 240
consensus_3272#1      AAGACATCCTGGTGGGGAT-CCAATTCTACT-CTGTTTTGTTGATTTTGAAACTGCTAGT 86
                      ******************* ** ******** ****************************

consensus_3272#0      CATAGCTGCTGATTGCTATGGATGGCTGTGTGCAGAGGCTACAA-TTCGATGAACATGAT 299
consensus_3272#1      CA-AGCTGCT-ATTGCTATGGATGCTT---TGCA-AGGCTACAAATTCGATGAACATGAT 140
                      ** ******* *************  *   **** ********* ***************

consensus_3272#0      CCGCAATTCACCCCATTTACGGCTCCAGTTTGCTCGTTTTACTGGCCCCAGGGGAGGTTC 359
consensus_3272#1      C-GCAATTCACCCCATTTACGGCTCCAGTTTGCTCGTTTTACTGGCCCCAGGGGAGGTTC 199
                      * **********************************************************

consensus_3272#0      AGGACCTGGTGGTG-TCGTGTTAGGCGTTAAGTTGTTCGTCCTGTTTATCAGGCATGATC 418
consensus_3272#1      AGGACCTGGTGGTGGTCGTGTTAGGCGTTAAGTTGTTCGTCCT-TTTATCAGGCATGATC 258
                      ************** **************************** ****************

consensus_3272#0      ACATCGAATGTTCAAGTGAAATGATGATAGTTCGTTGGTCGCTCTAGATATATTACTCCA 478
consensus_3272#1      ACATCGAATGTTCAAGTGAAATGATGATAGTTCGTTGGTCGCTCTAGATATATTACTCCA 318
                      ************************************************************

consensus_3272#0      TAGTGCTAGGATTGGTAACCTTCTGTTGTTCCAAGTNCCA-CTTTGGTGCCTTGGCTTTG 537
consensus_3272#1      TAGTGCTAGGATTGGTAACCTTCTGTTGTTCCAAGTTCCAACTTTGGTGCCTTGGCTTTG 378
                      ************************************ *** *******************

consensus_3272#0      TGAGATGCTTTCTGAC-TTAACTAGTTATTAAACATCAA-GCTGAACAC----CACAAAA 591
consensus_3272#1      TGAGATGCTTTCTGACATTAACTAGTTATTAAACATCAAAGCTGAAAACAATTCGTGGCA 438
                      **************** ********************** ****** **    *     *

consensus_3272#0      AAAA-- 595
consensus_3272#1      AAAAAA 444
                      ****