These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3284#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence [TTCCTCGACGAGGTGACCGTGGAGAAGGGGCCGATGCACTCGACGACGGACAAGTGGTCGGTGCTCTGCTCGGCGCACCAGATGGGGAGCTGCCGGATGGGCGCGAGCCCCCGCGACGGCGCCGTCGACGTCGCCGGCGAGAGCTGGGAGGCGGAGGGGCTCTACGTCTGCGACGGCAGCCTGCTCCCGACGGCGGTGGGCGTGAACCCGATGATCACCATACAGTCCATCGCCTACTGCGTCGCCAAGGGCATAGCCGACTCGATGGCACACGGCAAGGAGCAGCGCTAGTAAAATCTTTTTCCTCTTTTGTTCATGCATAAATTGCAAATTTGCAATGTCCCTGCTTGTTAATCAACTGTAATAGTGATGATAAATCACGAGCATATTTCAGCAGATGATTCATATGGGAAAATAATTCTAAGGGATTTAGAGATCAAAAA] [+] EMBL AU172521 [TTCCTCGACGAGGTGACCGTGGAGAAGGGGCCGATGCACTCGACGACGGACAAGTGGTCGGTGCTCTGCTCGGCGCACCAGATGGGGAGCTGCCGGATGGGCGCGAGCCCCCGCGACGGCGCCGTCGACGTCGCCGGCGAGAGCTGGGAGGCGGAGGGGCTCTACGTCTGCGACGGCAGCCTGCTCCCGACGGCGGTGGGCGTGAACCCGATGATCACCATACAGTCCATCGCCTACTGCGTCGCCAAGGGCATAGCCGACTCGATGGCACACGGCAAGGAGCAGCGCTAGTAAAATCTTTTTCCTCTTTTGTTCATGCATAAATTGCAAATTTGCAATGTCCCTGCTTGTTAATCAACTGTAATAGTGATGATAAATCACGAGCATATTTCAGCAGATGATTCATATGGGAAAATAATTCTAAGGGATTTAGAGATCAAAAA] consensusID : consensus_3284#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 394 fasta sequence [CGACGACGGACACAGTGGTCGGTGCTCTGCTCGGCGCACCAGATGGGGACTGCCGGATGGGCGCGAGCCCCCGCGACGGCGCCGTCGACGTCGCCGGCGAGACTGGGAGCGGAGGGGCTCTACGTCTGCGACGGCAGCCTGCTCCCGACGGCGGTGGGCGTGAACCCGATGATCACCATACAGTCCATCGCCTACTGCGTCGCCACAGGGCATAGCCGACTCGATGGCACCCGGCACAGGAGCAGCGCTAGTAAAATCTTTTTCCTCTTTTGTTCATGCATAAATTGCCAATTTGCCATGTCCCTGCTTGTTAATCAACTGTAATAGTGATGATAAATCATGAGCATATTTCAGCAGATGAAAATAATTCTAAGGGATTTAGAGAAAAAAAAAA] [+] EMBL BI808715 [CGACGACGGACACAGTGGTCGGTGCTCTGCTCGGCGCACCAGATGGGGACTGCCGGATGGGCGCGAGCCCCCGCGACGGCGCCGTCGACGTCGCCGGCGAGACTGGGAGCGGAGGGGCTCTACGTCTGCGACGGCAGCCTGCTCCCGACGGCGGTGGGCGTGAACCCGATGATCACCATACAGTCCATCGCCTACTGCGTCGCCACAGGGCATAGCCGACTCGATGGCACCCGGCACAGGAGCAGCGCTAGTAAAATCTTTTTCCTCTTTTGTTCATGCATAAATTGCCAATTTGCCATGTCCCTGCTTGTTAATCAACTGTAATAGTGATGATAAATCATGAGCATATTTCAGCAGATGAAAATAATTCTAAGGGATTTAGAGAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3284#0 TTCCTCGACGAGGTGACCGTGGAGAAGGGGCCGATGCACTCGACGACGGACA-AGTGGTC 59 consensus_3284#1 ----------------------------------------CGACGACGGACACAGTGGTC 20 ************ ******* consensus_3284#0 GGTGCTCTGCTCGGCGCACCAGATGGGGAGCTGCCGGATGGGCGCGAGCCCCCGCGACGG 119 consensus_3284#1 GGTGCTCTGCTCGGCGCACCAGATGGGGA-CTGCCGGATGGGCGCGAGCCCCCGCGACGG 79 ***************************** ****************************** consensus_3284#0 CGCCGTCGACGTCGCCGGCGAGAGCTGGGAGGCGGAGGGGCTCTACGTCTGCGACGGCAG 179 consensus_3284#1 CGCCGTCGACGTCGCCGGCGAGA-CTGGGAG-CGGAGGGGCTCTACGTCTGCGACGGCAG 137 *********************** ******* **************************** consensus_3284#0 CCTGCTCCCGACGGCGGTGGGCGTGAACCCGATGATCACCATACAGTCCATCGCCTACTG 239 consensus_3284#1 CCTGCTCCCGACGGCGGTGGGCGTGAACCCGATGATCACCATACAGTCCATCGCCTACTG 197 ************************************************************ consensus_3284#0 CGTCGCCA-AGGGCATAGCCGACTCGATGGCACACGGCA-AGGAGCAGCGCTAGTAAAAT 297 consensus_3284#1 CGTCGCCACAGGGCATAGCCGACTCGATGGCACCCGGCACAGGAGCAGCGCTAGTAAAAT 257 ******** ************************ ***** ******************** consensus_3284#0 CTTTTTCCTCTTTTGTTCATGCATAAATTGCAAATTTGCAATGTCCCTGCTTGTTAATCA 357 consensus_3284#1 CTTTTTCCTCTTTTGTTCATGCATAAATTGCCAATTTGCCATGTCCCTGCTTGTTAATCA 317 ******************************* ******* ******************** consensus_3284#0 ACTGTAATAGTGATGATAAATCACGAGCATATTTCAGCAGATGATTCATATGGGAAAATA 417 consensus_3284#1 ACTGTAATAGTGATGATAAATCATGAGCATATTTCAGCAGATGA-----------AAATA 366 *********************** ******************** ***** consensus_3284#0 ATTCTAAGGGATTTAGAGATCAAAAA-- 443 consensus_3284#1 ATTCTAAGGGATTTAGAGAAAAAAAAAA 394 ******************* ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||