These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3285#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 459 fasta sequence [GCCGCTTTTTTTTTTTTTTTTTTTTTTTGGGCACTTCATCGTTCATTCATAGCTTGGGTTGGGTATACAGTATACTGACACAAATACCCCCATACGGGCTTCTAACTATGCCACCACTAGAATGGCCACTAATATCTATAGTAGAGGAGTGCTTAGCATTCCTTGTGCATAGGGTTGCCGCATCATCTTTTATAGGAGTAAATACAAAATGCACAGCTTAATACCAGCACAGCACACCCTTCTAACCTTGCACTTGTTAACAGCTTATGATAATTTAGCTGATGCAAAAGATATACCACTAGGGTTACACTTTGGAAGCATTACGATCACAGTTACTCAGAGGATGATGTTTCGGTTCTTCTTCGCATCCGAGCTCCCCAGGAGAGGTTCTCCTCTGAATCCTTCGTCATGCTCCTCCTCTTCAGCTCCTCAATTTGGTCTCCCCTTGTCTCGTCCTCT] [+] EMBL CA760078 [GCCGCTTTTTTTTTTTTTTTTTTTTTTTGGGCACTTCATCGTTCATTCATAGCTTGGGTTGGGTATACAGTATACTGACACAAATACCCCCATACGGGCTTCTAACTATGCCACCACTAGAATGGCCACTAATATCTATAGTAGAGGAGTGCTTAGCATTCCTTGTGCATAGGGTTGCCGCATCATCTTTTATAGGAGTAAATACAAAATGCACAGCTTAATACCAGCACAGCACACCCTTCTAACCTTGCACTTGTTAACAGCTTATGATAATTTAGCTGATGCAAAAGATATACCACTAGGGTTACACTTTGGAAGCATTACGATCACAGTTACTCAGAGGATGATGTTTCGGTTCTTCTTCGCATCCGAGCTCCCCAGGAGAGGTTCTCCTCTGAATCCTTCGTCATGCTCCTCCTCTTCAGCTCCTCAATTTGGTCTCCCCTTGTCTCGTCCTCT] consensusID : consensus_3285#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [TTTTTTTTTTTTTTGAAGATACACCTTAGCTTTGCTTATTTTGACAAGTTGCTCATATGATATCATATCCCATATTTACACTAGAGCACACAAGGAAACGCAGAGCCTCCTACGCAAATATACACATCATACTTGGTCACTTCATCGTTCATTCATAGCTTGGGTTGGGTATACAGTATACTGACACAAATACCCCCATACGGGCTTCTAACTATGCCACCACTAGAATGGCCACTAATATCTATAGTAGAGGAGTGCTTAGCATTCCTTGTGCATAGGGTTGCCGCATCATCTTTTGTAGGAGTAAATACAAAATGCACAGCTTAATACCAGCACAGCACACCCTTCTAACCTTGCACTTGTTAACAGCTTATGATAATTTAGCTGATGCAAAAGATATACCACTAGGGTTACACTTTGGAAGCATTACGATCACAGTTAC] [-] EMBL AU172533 [TTTTTTTTTTTTTTGAAGATACACCTTAGCTTTGCTTATTTTGACAAGTTGCTCATATGATATCATATCCCATATTTACACTAGAGCACACAAGGAAACGCAGAGCCTCCTACGCAAATATACACATCATACTTGGTCACTTCATCGTTCATTCATAGCTTGGGTTGGGTATACAGTATACTGACACAAATACCCCCATACGGGCTTCTAACTATGCCACCACTAGAATGGCCACTAATATCTATAGTAGAGGAGTGCTTAGCATTCCTTGTGCATAGGGTTGCCGCATCATCTTTTGTAGGAGTAAATACAAAATGCACAGCTTAATACCAGCACAGCACACCCTTCTAACCTTGCACTTGTTAACAGCTTATGATAATTTAGCTGATGCAAAAGATATACCACTAGGGTTACACTTTGGAAGCATTACGATCACAGTTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3285#0 ------------------------------------------------------------ consensus_3285#1 TTTTTTTTTTTTTTGAAGATACACCTTAGCTTTGCTTATTTTGACAAGTTGCTCATATGA 60 consensus_3285#0 --------------------------------------------GCCGCTTTTTTT--TT 14 consensus_3285#1 TATCATATCCCATATTTACACTAGAGCACACAAGGAAACGCAGAGCCTCCTACGCAAATA 120 *** * * * consensus_3285#0 TTTTTTTTTTTTTTGGGCACTTCATCGTTCATTCATAGCTTGGGTTGGGTATACAGTATA 74 consensus_3285#1 TACACATCATACTTGGTCACTTCATCGTTCATTCATAGCTTGGGTTGGGTATACAGTATA 180 * * * **** ******************************************* consensus_3285#0 CTGACACAAATACCCCCATACGGGCTTCTAACTATGCCACCACTAGAATGGCCACTAATA 134 consensus_3285#1 CTGACACAAATACCCCCATACGGGCTTCTAACTATGCCACCACTAGAATGGCCACTAATA 240 ************************************************************ consensus_3285#0 TCTATAGTAGAGGAGTGCTTAGCATTCCTTGTGCATAGGGTTGCCGCATCATCTTTTATA 194 consensus_3285#1 TCTATAGTAGAGGAGTGCTTAGCATTCCTTGTGCATAGGGTTGCCGCATCATCTTTTGTA 300 ********************************************************* ** consensus_3285#0 GGAGTAAATACAAAATGCACAGCTTAATACCAGCACAGCACACCCTTCTAACCTTGCACT 254 consensus_3285#1 GGAGTAAATACAAAATGCACAGCTTAATACCAGCACAGCACACCCTTCTAACCTTGCACT 360 ************************************************************ consensus_3285#0 TGTTAACAGCTTATGATAATTTAGCTGATGCAAAAGATATACCACTAGGGTTACACTTTG 314 consensus_3285#1 TGTTAACAGCTTATGATAATTTAGCTGATGCAAAAGATATACCACTAGGGTTACACTTTG 420 ************************************************************ consensus_3285#0 GAAGCATTACGATCACAGTTACTCAGAGGATGATGTTTCGGTTCTTCTTCGCATCCGAGC 374 consensus_3285#1 GAAGCATTACGATCACAGTTAC-------------------------------------- 442 ********************** consensus_3285#0 TCCCCAGGAGAGGTTCTCCTCTGAATCCTTCGTCATGCTCCTCCTCTTCAGCTCCTCAAT 434 consensus_3285#1 ------------------------------------------------------------ consensus_3285#0 TTGGTCTCCCCTTGTCTCGTCCTCT 459 consensus_3285#1 ------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||