These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_329#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence [ATACTACATAAAACTACTCTTTGTTAATAATCAAATCGAAAAAAATGGCTACAATCATTAAATACATTTTATTTGCCATCGTTCTTTTATTTGCATGTGGTTTATTTGAACCAGCTTCTGCACAATTTGGTGGTTTCGGTCGTGGTGGATTCAGTCGTGGCGGATTCGGTCGTGGCGGATTCGGTCGTGGTGGATTCGGTCGTGGTGGATTTGGTCATGGTGGATTTGGTCATGGCGGATTTGGTCATGGTGGATTTGGCCGTGGCGGATTCGGTCGTGGTGGATTTGGTCGCAGAGTATTTTTTTAAGTACTCTGATAGTATTTCCTCTGTGTTCTATATCGAGTCGCTACATATGACATGCTTTTAGATTTATACTGATTACAAAATCTAAAGTCTATCTAAATTGTCAATATCAATTTTCTGTCGATATGTTATTCTATTCTTTGGTGGGGAATTTCCTATGTGAATCTATAAATCAATTATCTTGAATGAATAAAATTTACTTTGGTCAAATCCTAAAAAAAAAAAAAAAAAAAAAAATCTAAGGGGGGGCCCGGCACCCAATCCCCCCTATGGGGATCGAATTACGCGGGTCCCTGGGCCGTTTTTTCACAACCCCG] [+] EMBL CA755685 [ATACTACATAAAACTACTCTTTGTTAATAATCAAATCGAAAAAAATGGCTACAATCATTAAATACATTTTATTTGCCATCGTTCTTTTATTTGCATGTGGTTTATTTGAACCAGCTTCTGCACAATTTGGTGGTTTCGGTCGTGGTGGATTCAGTCGTGGCGGATTCGGTCGTGGCGGATTCGGTCGTGGTGGATTCGGTCGTGGTGGATTTGGTCATGGTGGATTTGGTCATGGCGGATTTGGTCATGGTGGATTTGGCCGTGGCGGATTCGGTCGTGGTGGATTTGGTCGCAGAGTATTTTTTTAAGTACTCTGATAGTATTTCCTCTGTGTTCTATATCGAGTCGCTACATATGACATGCTTTTAGATTTATACTGATTACAAAATCTAAAGTCTATCTAAATTGTCAATATCAATTTTCTGTCGATATGTTATTCTATTCTTTGGTGGGGAATTTCCTATGTGAATCTATAAATCAATTATCTTGAATGAATAAAATTTACTTTGGTCAAATCCTAAAAAAAAAAAAAAAAAAAAAAATCTAAGGGGGGGCCCGGCACCCAATCCCCCCTATGGGGATCGAATTACGCGGGTCCCTGGGCCGTTTTTTCACAACCCCG] consensusID : consensus_329#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence [ACTCTTTCTTAATCATCAAATCGAAAAAAATGGCTACAATCATTAAATACATTTTATTTGCCATCGTTCTTTTATTTTCATGTGGTTTATTTGAACCAGCTTCTGCACAATTTGGTGGTTTCGGTCGTGGCGGATTCGGTCGTGGCGGATTCCATCGTGGTGGATTCGGTCATGGCGGATTCGGTCGTGGTGGATTTGGTCATGGTGGGTTTGGTCATGGCGGATTTGGCCGTGGTGGATTCGGTCGTGGTGGATTCGGTCGTGGTGGTTTCGGTCGTGGTAGATTTTTTTAAGTATTCTGATAGTATTTCCTCTGTGTTCTATATTGAGTCGCTACATATGACATGCTTTTAGATTTATACTGATTACAAAATCTAAAGTGTATCTNAATTGTCAATATCAATTTTCTGTCGATATGTTATTCTATTCTCTGTTGTGAATTTCCTATGTGAATCTATNAATCAATTATCTTGAATGAATAANATTTACTTTTGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] [+] EMBL CA755616 [ACTCTTTCTTAATCATCAAATCGAAAAAAATGGCTACAATCATTAAATACATTTTATTTGCCATCGTTCTTTTATTTTCATGTGGTTTATTTGAACCAGCTTCTGCACAATTTGGTGGTTTCGGTCGTGGCGGATTCGGTCGTGGCGGATTCCATCGTGGTGGATTCGGTCATGGCGGATTCGGTCGTGGTGGATTTGGTCATGGTGGGTTTGGTCATGGCGGATTTGGCCGTGGTGGATTCGGTCGTGGTGGATTCGGTCGTGGTGGTTTCGGTCGTGGTAGATTTTTTTAAGTATTCTGATAGTATTTCCTCTGTGTTCTATATTGAGTCGCTACATATGACATGCTTTTAGATTTATACTGATTACAAAATCTAAAGTGTATCTNAATTGTCAATATCAATTTTCTGTCGATATGTTATTCTATTCTCTGTTGTGAATTTCCTATGTGAATCTATNAATCAATTATCTTGAATGAATAANATTTACTTTTGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_329#0 ATACTACATAAAACTACTCTTTGTTAATAATCAAATCGAAAAAAATGGCTACAATCATTA 60 consensus_329#1 ---------------ACTCTTTCTTAATCATCAAATCGAAAAAAATGGCTACAATCATTA 45 ******* ***** ******************************* consensus_329#0 AATACATTTTATTTGCCATCGTTCTTTTATTTGCATGTGGTTTATTTGAACCAGCTTCTG 120 consensus_329#1 AATACATTTTATTTGCCATCGTTCTTTTATTTTCATGTGGTTTATTTGAACCAGCTTCTG 105 ******************************** *************************** consensus_329#0 CACAATTTGGTGGTTTCGGTCGTGGTGGATTCAGTCGTGGCGGATTCGGTCGTGGCGGAT 180 consensus_329#1 CACAATTTGGTGGTTTCGGTCGTGGCGGATTCGGTCGTGGCGGATTCCATCGTGGTGGAT 165 ************************* ****** ************** ****** **** consensus_329#0 TCGGTCGTGGTGGATTCGGTCGTGGTGGATTTGGTCATGGTGGATTTGGTCATGGCGGAT 240 consensus_329#1 TCGGTCATGGCGGATTCGGTCGTGGTGGATTTGGTCATGGTGGGTTTGGTCATGGCGGAT 225 ****** *** ******************************** **************** consensus_329#0 TTGGTCATGGTGGATTTGGCCGTGGCGGATTCGGTCGTGGTGGATTTGGTCGCAGAGTAT 300 consensus_329#1 TTGGCCGTGGTGGATTCGGTCGTGGTGGATTCGGTCGTGGTGGTTTCGGTCGTGGTAGAT 285 **** * ********* ** ***** ***************** ** ***** * ** consensus_329#0 TTTTTTAAGTACTCTGATAGTATTTCCTCTGTGTTCTATATCGAGTCGCTACATATGACA 360 consensus_329#1 TTTTTTAAGTATTCTGATAGTATTTCCTCTGTGTTCTATATTGAGTCGCTACATATGACA 345 *********** ***************************** ****************** consensus_329#0 TGCTTTTAGATTTATACTGATTACAAAATCTAAAGTCTATCTAAATTGTCAATATCAATT 420 consensus_329#1 TGCTTTTAGATTTATACTGATTACAAAATCTAAAGTGTATCTNAATTGTCAATATCAATT 405 ************************************ ***** ***************** consensus_329#0 TTCTGTCGATATGTTATTCTATTCTTTGGTGGGGAATTTCCTATGTGAATCTATAAATCA 480 consensus_329#1 TTCTGTCGATATGTTATTCTATTCTCTGTTGTG-AATTTCCTATGTGAATCTATNAATCA 464 ************************* ** ** * ******************** ***** consensus_329#0 ATTATCTTGAATGAATAAAATTTACTTTGGTCAAATCCTAAAAAAAAAAAAAAAAAAAAA 540 consensus_329#1 ATTATCTTGAATGAATAANATTTACTTTTGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNN 524 ****************** ********* ** consensus_329#0 AATCTAAGGGGGGGCCCGGCACCCAATCCCCCCTATGGGGATCGAATTACGCGGGTCCCT 600 consensus_329#1 NNNNNNNNNNNN------------------------------------------------ 536 consensus_329#0 GGGCCGTTTTTTCACAACCCCG 622 consensus_329#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||