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Oryza sativa
cluster # 3298 cluster # 3298       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3298#0 length = 699 sequences # 1  
consensus_3298#1 length = 582 sequences # 1  

consensusID : consensus_3298#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 699
fasta sequence
                              [GCATTACAGTAAATGGAGTGCAACTCCCAAGACACGGATTTATTGACATCACCCACCATCAAAGGACTTTTATCGTGTTTTTAGTGGTCTTCCAGTATAGCTACTTGGAAGAGAGCATCAATCCTTCGAGGAAACCCAGAAATGCTGGGTGACTCTGTAGCTTGGGCTGGCTGTACCATCATGTATTTACTGGGACAGCAGCAGCATTTTGAGCTTTTCGACTTCTCTTACCNATTTCTCAACGTGGCAGAAGTAGAAAATGCAACAGTTTCACTTTATCAATATTCAGATAGGAACNAAAGCCCGAATTTCTTGCAGGGTTACGAGGGTATCCTTGAAGCGATGAGGAAAGCCAGGAGGCTCAATAACCATGTTTTCTCCATGTTGAGAGCACGGTGCCCCCTCGAGGACAAGATTGCATGTGCTATCAAGCCAAGTGGGGCGCCTCTTCACCGTATGAAGTTTACGAACACCGTTTCTGCGTTCGAGACATTGCCACAGAGAGCTACTTGAGAGGCTATTCGGCGTGTATGTGTTTCCTTCTTTTTTTTCCTTGTACGTGTGAGGTCATATGTTTTATGTTCTTGTAAAGCTGCTGTATATAATGTTGTGTAATTGTAATAATAAACGATGAAAACNGCTTGAGTGTTATTAGGATCTATCTTGTTGTATACGCAATTAGAATCTTATGTTTAAAAA]

[+] EMBL BQ908516             [GCATTACAGTAAATGGAGTGCAACTCCCAAGACACGGATTTATTGACATCACCCACCATCAAAGGACTTTTATCGTGTTTTTAGTGGTCTTCCAGTATAGCTACTTGGAAGAGAGCATCAATCCTTCGAGGAAACCCAGAAATGCTGGGTGACTCTGTAGCTTGGGCTGGCTGTACCATCATGTATTTACTGGGACAGCAGCAGCATTTTGAGCTTTTCGACTTCTCTTACCNATTTCTCAACGTGGCAGAAGTAGAAAATGCAACAGTTTCACTTTATCAATATTCAGATAGGAACNAAAGCCCGAATTTCTTGCAGGGTTACGAGGGTATCCTTGAAGCGATGAGGAAAGCCAGGAGGCTCAATAACCATGTTTTCTCCATGTTGAGAGCACGGTGCCCCCTCGAGGACAAGATTGCATGTGCTATCAAGCCAAGTGGGGCGCCTCTTCACCGTATGAAGTTTACGAACACCGTTTCTGCGTTCGAGACATTGCCACAGAGAGCTACTTGAGAGGCTATTCGGCGTGTATGTGTTTCCTTCTTTTTTTTCCTTGTACGTGTGAGGTCATATGTTTTATGTTCTTGTAAAGCTGCTGTATATAATGTTGTGTAATTGTAATAATAAACGATGAAAACNGCTTGAGTGTTATTAGGATCTATCTTGTTGTATACGCAATTAGAATCTTATGTTTAAAAA]


>consensus_3298#0 GCATTACAGTAAATGGAGTGCAACTCCCAAGACACGGATTTATTGACATCACCCACCATC AAAGGACTTTTATCGTGTTTTTAGTGGTCTTCCAGTATAGCTACTTGGAAGAGAGCATCA ATCCTTCGAGGAAACCCAGAAATGCTGGGTGACTCTGTAGCTTGGGCTGGCTGTACCATC ATGTATTTACTGGGACAGCAGCAGCATTTTGAGCTTTTCGACTTCTCTTACCNATTTCTC AACGTGGCAGAAGTAGAAAATGCAACAGTTTCACTTTATCAATATTCAGATAGGAACNAA AGCCCGAATTTCTTGCAGGGTTACGAGGGTATCCTTGAAGCGATGAGGAAAGCCAGGAGG CTCAATAACCATGTTTTCTCCATGTTGAGAGCACGGTGCCCCCTCGAGGACAAGATTGCA TGTGCTATCAAGCCAAGTGGGGCGCCTCTTCACCGTATGAAGTTTACGAACACCGTTTCT GCGTTCGAGACATTGCCACAGAGAGCTACTTGAGAGGCTATTCGGCGTGTATGTGTTTCC TTCTTTTTTTTCCTTGTACGTGTGAGGTCATATGTTTTATGTTCTTGTAAAGCTGCTGTA TATAATGTTGTGTAATTGTAATAATAAACGATGAAAACNGCTTGAGTGTTATTAGGATCT ATCTTGTTGTATACGCAATTAGAATCTTATGTTTAAAAA



consensusID : consensus_3298#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 582
fasta sequence
                              [GTCGACCCACGCTGTCCGATCAATCCTTCGAGGAAACCACAGAAATTTGGGTGACTCTGTAGCTTGGCCTGCCTGTCACACATCATGTATTTACTGGGACAGCACGCAGCATTTTGAGCTTTTCGACTTCTCTTGACCCATTTCTCAACGTGCCAGAAGTAGAAAATGCCACCAGTTTCACTTTATCACATATTCAGATAGGAACCAAAGCCCGAATTTCTTGCAGGGTTACGAGGGTATCCTTGAAGCGATGAGGAAAGCCACGGAGGCTCAATAACCATGTTTTCTCCATGTTGAGAGCACGGTGCCCCCTCGAGGACAAGATTGCATGTGCTATCAAGCCAAGTGGGGCGCCTCTTCACCGTATGAAGTTTACGAACACCGTTTCTGCGTTCGAGACATTGCCCCAGAGAGCTACTTGAGAGGCTATTCGGCGTGTATGTGTTTCCTTCCTTCTTTTTTTTCCTTGTACGTGTGAGGTCATATGTTTTATGTTCTTGTAAAGCTGCTGTATATAATGTTGTGTAATTGTAATCATAAACGATGAAAACAGCTTGAGTGTTATTAGGATCAAAAAAAAAA]

[+] EMBL BI804851             [GTCGACCCACGCTGTCCGATCAATCCTTCGAGGAAACCACAGAAATTTGGGTGACTCTGTAGCTTGGCCTGCCTGTCACACATCATGTATTTACTGGGACAGCACGCAGCATTTTGAGCTTTTCGACTTCTCTTGACCCATTTCTCAACGTGCCAGAAGTAGAAAATGCCACCAGTTTCACTTTATCACATATTCAGATAGGAACCAAAGCCCGAATTTCTTGCAGGGTTACGAGGGTATCCTTGAAGCGATGAGGAAAGCCACGGAGGCTCAATAACCATGTTTTCTCCATGTTGAGAGCACGGTGCCCCCTCGAGGACAAGATTGCATGTGCTATCAAGCCAAGTGGGGCGCCTCTTCACCGTATGAAGTTTACGAACACCGTTTCTGCGTTCGAGACATTGCCCCAGAGAGCTACTTGAGAGGCTATTCGGCGTGTATGTGTTTCCTTCCTTCTTTTTTTTCCTTGTACGTGTGAGGTCATATGTTTTATGTTCTTGTAAAGCTGCTGTATATAATGTTGTGTAATTGTAATCATAAACGATGAAAACAGCTTGAGTGTTATTAGGATCAAAAAAAAAA]


>consensus_3298#1 GTCGACCCACGCTGTCCGATCAATCCTTCGAGGAAACCACAGAAATTTGGGTGACTCTGT AGCTTGGCCTGCCTGTCACACATCATGTATTTACTGGGACAGCACGCAGCATTTTGAGCT TTTCGACTTCTCTTGACCCATTTCTCAACGTGCCAGAAGTAGAAAATGCCACCAGTTTCA CTTTATCACATATTCAGATAGGAACCAAAGCCCGAATTTCTTGCAGGGTTACGAGGGTAT CCTTGAAGCGATGAGGAAAGCCACGGAGGCTCAATAACCATGTTTTCTCCATGTTGAGAG CACGGTGCCCCCTCGAGGACAAGATTGCATGTGCTATCAAGCCAAGTGGGGCGCCTCTTC ACCGTATGAAGTTTACGAACACCGTTTCTGCGTTCGAGACATTGCCCCAGAGAGCTACTT GAGAGGCTATTCGGCGTGTATGTGTTTCCTTCCTTCTTTTTTTTCCTTGTACGTGTGAGG TCATATGTTTTATGTTCTTGTAAAGCTGCTGTATATAATGTTGTGTAATTGTAATCATAA ACGATGAAAACAGCTTGAGTGTTATTAGGATCAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3298#0      GCATTACAGTAAATGGAGTGCAACTCCCAAGACACGGATTTATTGACATCACCCACCATC 60
consensus_3298#1      ------------------------------------------------------------
                                                                                  

consensus_3298#0      AAAGGACTTTTATCGTGTTTTTAGTGGTCTTCCAGTATAGCTACTTGGAAGAGAGCATCA 120
consensus_3298#1      --------------------------------------GTCGACCCACGCTGTCCGATCA 22
                                                              * **            ****

consensus_3298#0      ATCCTTCGAGGAAACC-CAGAAATGCTGGGTGACTCTGTAGCTTGGGCTGGCTGT-AC-C 177
consensus_3298#1      ATCCTTCGAGGAAACCACAGAAAT-TTGGGTGACTCTGTAGCTTGGCCTGCCTGTCACAC 81
                      **************** *******  ******************** *** **** ** *

consensus_3298#0      ATCATGTATTTACTGGGACAGCA-GCAGCATTTTGAGCTTTTCGACTTCTCTT-ACCNAT 235
consensus_3298#1      ATCATGTATTTACTGGGACAGCACGCAGCATTTTGAGCTTTTCGACTTCTCTTGACCCAT 141
                      *********************** ***************************** *** **

consensus_3298#0      TTCTCAACGTGGCAGAAGTAGAAAATGCAAC-AGTTTCACTTTATCA-ATATTCAGATAG 293
consensus_3298#1      TTCTCAACGTGCCAGAAGTAGAAAATGCCACCAGTTTCACTTTATCACATATTCAGATAG 201
                      *********** **************** ** *************** ************

consensus_3298#0      GAACNAAAGCCCGAATTTCTTGCAGGGTTACGAGGGTATCCTTGAAGCGATGAGGAAAGC 353
consensus_3298#1      GAACCAAAGCCCGAATTTCTTGCAGGGTTACGAGGGTATCCTTGAAGCGATGAGGAAAGC 261
                      **** *******************************************************

consensus_3298#0      CA-GGAGGCTCAATAACCATGTTTTCTCCATGTTGAGAGCACGGTGCCCCCTCGAGGACA 412
consensus_3298#1      CACGGAGGCTCAATAACCATGTTTTCTCCATGTTGAGAGCACGGTGCCCCCTCGAGGACA 321
                      ** *********************************************************

consensus_3298#0      AGATTGCATGTGCTATCAAGCCAAGTGGGGCGCCTCTTCACCGTATGAAGTTTACGAACA 472
consensus_3298#1      AGATTGCATGTGCTATCAAGCCAAGTGGGGCGCCTCTTCACCGTATGAAGTTTACGAACA 381
                      ************************************************************

consensus_3298#0      CCGTTTCTGCGTTCGAGACATTGCCACAGAGAGCTACTTGAGAGGCTATTCGGCGTGTAT 532
consensus_3298#1      CCGTTTCTGCGTTCGAGACATTGCCCCAGAGAGCTACTTGAGAGGCTATTCGGCGTGTAT 441
                      ************************* **********************************

consensus_3298#0      GTGTTTCCTTC----TTTTTTTTCCTTGTACGTGTGAGGTCATATGTTTTATGTTCTTGT 588
consensus_3298#1      GTGTTTCCTTCCTTCTTTTTTTTCCTTGTACGTGTGAGGTCATATGTTTTATGTTCTTGT 501
                      ***********    *********************************************

consensus_3298#0      AAAGCTGCTGTATATAATGTTGTGTAATTGTAATAATAAACGATGAAAACNGCTTGAGTG 648
consensus_3298#1      AAAGCTGCTGTATATAATGTTGTGTAATTGTAATCATAAACGATGAAAACAGCTTGAGTG 561
                      ********************************** *************** *********

consensus_3298#0      TTATTAGGATCTATCTTGTTGTATACGCAATTAGAATCTTATGTTTAAAAA 699
consensus_3298#1      TTATTAGGATCAAAAAAAAAA------------------------------ 582
                      *********** *                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)