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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3298#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 699 fasta sequence
[GCATTACAGTAAATGGAGTGCAACTCCCAAGACACGGATTTATTGACATCACCCACCATCAAAGGACTTTTATCGTGTTTTTAGTGGTCTTCCAGTATAGCTACTTGGAAGAGAGCATCAATCCTTCGAGGAAACCCAGAAATGCTGGGTGACTCTGTAGCTTGGGCTGGCTGTACCATCATGTATTTACTGGGACAGCAGCAGCATTTTGAGCTTTTCGACTTCTCTTACCNATTTCTCAACGTGGCAGAAGTAGAAAATGCAACAGTTTCACTTTATCAATATTCAGATAGGAACNAAAGCCCGAATTTCTTGCAGGGTTACGAGGGTATCCTTGAAGCGATGAGGAAAGCCAGGAGGCTCAATAACCATGTTTTCTCCATGTTGAGAGCACGGTGCCCCCTCGAGGACAAGATTGCATGTGCTATCAAGCCAAGTGGGGCGCCTCTTCACCGTATGAAGTTTACGAACACCGTTTCTGCGTTCGAGACATTGCCACAGAGAGCTACTTGAGAGGCTATTCGGCGTGTATGTGTTTCCTTCTTTTTTTTCCTTGTACGTGTGAGGTCATATGTTTTATGTTCTTGTAAAGCTGCTGTATATAATGTTGTGTAATTGTAATAATAAACGATGAAAACNGCTTGAGTGTTATTAGGATCTATCTTGTTGTATACGCAATTAGAATCTTATGTTTAAAAA]
[+] EMBL BQ908516 [GCATTACAGTAAATGGAGTGCAACTCCCAAGACACGGATTTATTGACATCACCCACCATCAAAGGACTTTTATCGTGTTTTTAGTGGTCTTCCAGTATAGCTACTTGGAAGAGAGCATCAATCCTTCGAGGAAACCCAGAAATGCTGGGTGACTCTGTAGCTTGGGCTGGCTGTACCATCATGTATTTACTGGGACAGCAGCAGCATTTTGAGCTTTTCGACTTCTCTTACCNATTTCTCAACGTGGCAGAAGTAGAAAATGCAACAGTTTCACTTTATCAATATTCAGATAGGAACNAAAGCCCGAATTTCTTGCAGGGTTACGAGGGTATCCTTGAAGCGATGAGGAAAGCCAGGAGGCTCAATAACCATGTTTTCTCCATGTTGAGAGCACGGTGCCCCCTCGAGGACAAGATTGCATGTGCTATCAAGCCAAGTGGGGCGCCTCTTCACCGTATGAAGTTTACGAACACCGTTTCTGCGTTCGAGACATTGCCACAGAGAGCTACTTGAGAGGCTATTCGGCGTGTATGTGTTTCCTTCTTTTTTTTCCTTGTACGTGTGAGGTCATATGTTTTATGTTCTTGTAAAGCTGCTGTATATAATGTTGTGTAATTGTAATAATAAACGATGAAAACNGCTTGAGTGTTATTAGGATCTATCTTGTTGTATACGCAATTAGAATCTTATGTTTAAAAA]
consensusID : consensus_3298#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence
[GTCGACCCACGCTGTCCGATCAATCCTTCGAGGAAACCACAGAAATTTGGGTGACTCTGTAGCTTGGCCTGCCTGTCACACATCATGTATTTACTGGGACAGCACGCAGCATTTTGAGCTTTTCGACTTCTCTTGACCCATTTCTCAACGTGCCAGAAGTAGAAAATGCCACCAGTTTCACTTTATCACATATTCAGATAGGAACCAAAGCCCGAATTTCTTGCAGGGTTACGAGGGTATCCTTGAAGCGATGAGGAAAGCCACGGAGGCTCAATAACCATGTTTTCTCCATGTTGAGAGCACGGTGCCCCCTCGAGGACAAGATTGCATGTGCTATCAAGCCAAGTGGGGCGCCTCTTCACCGTATGAAGTTTACGAACACCGTTTCTGCGTTCGAGACATTGCCCCAGAGAGCTACTTGAGAGGCTATTCGGCGTGTATGTGTTTCCTTCCTTCTTTTTTTTCCTTGTACGTGTGAGGTCATATGTTTTATGTTCTTGTAAAGCTGCTGTATATAATGTTGTGTAATTGTAATCATAAACGATGAAAACAGCTTGAGTGTTATTAGGATCAAAAAAAAAA]
[+] EMBL BI804851 [GTCGACCCACGCTGTCCGATCAATCCTTCGAGGAAACCACAGAAATTTGGGTGACTCTGTAGCTTGGCCTGCCTGTCACACATCATGTATTTACTGGGACAGCACGCAGCATTTTGAGCTTTTCGACTTCTCTTGACCCATTTCTCAACGTGCCAGAAGTAGAAAATGCCACCAGTTTCACTTTATCACATATTCAGATAGGAACCAAAGCCCGAATTTCTTGCAGGGTTACGAGGGTATCCTTGAAGCGATGAGGAAAGCCACGGAGGCTCAATAACCATGTTTTCTCCATGTTGAGAGCACGGTGCCCCCTCGAGGACAAGATTGCATGTGCTATCAAGCCAAGTGGGGCGCCTCTTCACCGTATGAAGTTTACGAACACCGTTTCTGCGTTCGAGACATTGCCCCAGAGAGCTACTTGAGAGGCTATTCGGCGTGTATGTGTTTCCTTCCTTCTTTTTTTTCCTTGTACGTGTGAGGTCATATGTTTTATGTTCTTGTAAAGCTGCTGTATATAATGTTGTGTAATTGTAATCATAAACGATGAAAACAGCTTGAGTGTTATTAGGATCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3298#0 GCATTACAGTAAATGGAGTGCAACTCCCAAGACACGGATTTATTGACATCACCCACCATC 60
consensus_3298#1 ------------------------------------------------------------
consensus_3298#0 AAAGGACTTTTATCGTGTTTTTAGTGGTCTTCCAGTATAGCTACTTGGAAGAGAGCATCA 120
consensus_3298#1 --------------------------------------GTCGACCCACGCTGTCCGATCA 22
* ** ****
consensus_3298#0 ATCCTTCGAGGAAACC-CAGAAATGCTGGGTGACTCTGTAGCTTGGGCTGGCTGT-AC-C 177
consensus_3298#1 ATCCTTCGAGGAAACCACAGAAAT-TTGGGTGACTCTGTAGCTTGGCCTGCCTGTCACAC 81
**************** ******* ******************** *** **** ** *
consensus_3298#0 ATCATGTATTTACTGGGACAGCA-GCAGCATTTTGAGCTTTTCGACTTCTCTT-ACCNAT 235
consensus_3298#1 ATCATGTATTTACTGGGACAGCACGCAGCATTTTGAGCTTTTCGACTTCTCTTGACCCAT 141
*********************** ***************************** *** **
consensus_3298#0 TTCTCAACGTGGCAGAAGTAGAAAATGCAAC-AGTTTCACTTTATCA-ATATTCAGATAG 293
consensus_3298#1 TTCTCAACGTGCCAGAAGTAGAAAATGCCACCAGTTTCACTTTATCACATATTCAGATAG 201
*********** **************** ** *************** ************
consensus_3298#0 GAACNAAAGCCCGAATTTCTTGCAGGGTTACGAGGGTATCCTTGAAGCGATGAGGAAAGC 353
consensus_3298#1 GAACCAAAGCCCGAATTTCTTGCAGGGTTACGAGGGTATCCTTGAAGCGATGAGGAAAGC 261
**** *******************************************************
consensus_3298#0 CA-GGAGGCTCAATAACCATGTTTTCTCCATGTTGAGAGCACGGTGCCCCCTCGAGGACA 412
consensus_3298#1 CACGGAGGCTCAATAACCATGTTTTCTCCATGTTGAGAGCACGGTGCCCCCTCGAGGACA 321
** *********************************************************
consensus_3298#0 AGATTGCATGTGCTATCAAGCCAAGTGGGGCGCCTCTTCACCGTATGAAGTTTACGAACA 472
consensus_3298#1 AGATTGCATGTGCTATCAAGCCAAGTGGGGCGCCTCTTCACCGTATGAAGTTTACGAACA 381
************************************************************
consensus_3298#0 CCGTTTCTGCGTTCGAGACATTGCCACAGAGAGCTACTTGAGAGGCTATTCGGCGTGTAT 532
consensus_3298#1 CCGTTTCTGCGTTCGAGACATTGCCCCAGAGAGCTACTTGAGAGGCTATTCGGCGTGTAT 441
************************* **********************************
consensus_3298#0 GTGTTTCCTTC----TTTTTTTTCCTTGTACGTGTGAGGTCATATGTTTTATGTTCTTGT 588
consensus_3298#1 GTGTTTCCTTCCTTCTTTTTTTTCCTTGTACGTGTGAGGTCATATGTTTTATGTTCTTGT 501
*********** *********************************************
consensus_3298#0 AAAGCTGCTGTATATAATGTTGTGTAATTGTAATAATAAACGATGAAAACNGCTTGAGTG 648
consensus_3298#1 AAAGCTGCTGTATATAATGTTGTGTAATTGTAATCATAAACGATGAAAACAGCTTGAGTG 561
********************************** *************** *********
consensus_3298#0 TTATTAGGATCTATCTTGTTGTATACGCAATTAGAATCTTATGTTTAAAAA 699
consensus_3298#1 TTATTAGGATCAAAAAAAAAA------------------------------ 582
*********** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||