These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3298#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 699 fasta sequence [GCATTACAGTAAATGGAGTGCAACTCCCAAGACACGGATTTATTGACATCACCCACCATCAAAGGACTTTTATCGTGTTTTTAGTGGTCTTCCAGTATAGCTACTTGGAAGAGAGCATCAATCCTTCGAGGAAACCCAGAAATGCTGGGTGACTCTGTAGCTTGGGCTGGCTGTACCATCATGTATTTACTGGGACAGCAGCAGCATTTTGAGCTTTTCGACTTCTCTTACCNATTTCTCAACGTGGCAGAAGTAGAAAATGCAACAGTTTCACTTTATCAATATTCAGATAGGAACNAAAGCCCGAATTTCTTGCAGGGTTACGAGGGTATCCTTGAAGCGATGAGGAAAGCCAGGAGGCTCAATAACCATGTTTTCTCCATGTTGAGAGCACGGTGCCCCCTCGAGGACAAGATTGCATGTGCTATCAAGCCAAGTGGGGCGCCTCTTCACCGTATGAAGTTTACGAACACCGTTTCTGCGTTCGAGACATTGCCACAGAGAGCTACTTGAGAGGCTATTCGGCGTGTATGTGTTTCCTTCTTTTTTTTCCTTGTACGTGTGAGGTCATATGTTTTATGTTCTTGTAAAGCTGCTGTATATAATGTTGTGTAATTGTAATAATAAACGATGAAAACNGCTTGAGTGTTATTAGGATCTATCTTGTTGTATACGCAATTAGAATCTTATGTTTAAAAA] [+] EMBL BQ908516 [GCATTACAGTAAATGGAGTGCAACTCCCAAGACACGGATTTATTGACATCACCCACCATCAAAGGACTTTTATCGTGTTTTTAGTGGTCTTCCAGTATAGCTACTTGGAAGAGAGCATCAATCCTTCGAGGAAACCCAGAAATGCTGGGTGACTCTGTAGCTTGGGCTGGCTGTACCATCATGTATTTACTGGGACAGCAGCAGCATTTTGAGCTTTTCGACTTCTCTTACCNATTTCTCAACGTGGCAGAAGTAGAAAATGCAACAGTTTCACTTTATCAATATTCAGATAGGAACNAAAGCCCGAATTTCTTGCAGGGTTACGAGGGTATCCTTGAAGCGATGAGGAAAGCCAGGAGGCTCAATAACCATGTTTTCTCCATGTTGAGAGCACGGTGCCCCCTCGAGGACAAGATTGCATGTGCTATCAAGCCAAGTGGGGCGCCTCTTCACCGTATGAAGTTTACGAACACCGTTTCTGCGTTCGAGACATTGCCACAGAGAGCTACTTGAGAGGCTATTCGGCGTGTATGTGTTTCCTTCTTTTTTTTCCTTGTACGTGTGAGGTCATATGTTTTATGTTCTTGTAAAGCTGCTGTATATAATGTTGTGTAATTGTAATAATAAACGATGAAAACNGCTTGAGTGTTATTAGGATCTATCTTGTTGTATACGCAATTAGAATCTTATGTTTAAAAA] consensusID : consensus_3298#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence [GTCGACCCACGCTGTCCGATCAATCCTTCGAGGAAACCACAGAAATTTGGGTGACTCTGTAGCTTGGCCTGCCTGTCACACATCATGTATTTACTGGGACAGCACGCAGCATTTTGAGCTTTTCGACTTCTCTTGACCCATTTCTCAACGTGCCAGAAGTAGAAAATGCCACCAGTTTCACTTTATCACATATTCAGATAGGAACCAAAGCCCGAATTTCTTGCAGGGTTACGAGGGTATCCTTGAAGCGATGAGGAAAGCCACGGAGGCTCAATAACCATGTTTTCTCCATGTTGAGAGCACGGTGCCCCCTCGAGGACAAGATTGCATGTGCTATCAAGCCAAGTGGGGCGCCTCTTCACCGTATGAAGTTTACGAACACCGTTTCTGCGTTCGAGACATTGCCCCAGAGAGCTACTTGAGAGGCTATTCGGCGTGTATGTGTTTCCTTCCTTCTTTTTTTTCCTTGTACGTGTGAGGTCATATGTTTTATGTTCTTGTAAAGCTGCTGTATATAATGTTGTGTAATTGTAATCATAAACGATGAAAACAGCTTGAGTGTTATTAGGATCAAAAAAAAAA] [+] EMBL BI804851 [GTCGACCCACGCTGTCCGATCAATCCTTCGAGGAAACCACAGAAATTTGGGTGACTCTGTAGCTTGGCCTGCCTGTCACACATCATGTATTTACTGGGACAGCACGCAGCATTTTGAGCTTTTCGACTTCTCTTGACCCATTTCTCAACGTGCCAGAAGTAGAAAATGCCACCAGTTTCACTTTATCACATATTCAGATAGGAACCAAAGCCCGAATTTCTTGCAGGGTTACGAGGGTATCCTTGAAGCGATGAGGAAAGCCACGGAGGCTCAATAACCATGTTTTCTCCATGTTGAGAGCACGGTGCCCCCTCGAGGACAAGATTGCATGTGCTATCAAGCCAAGTGGGGCGCCTCTTCACCGTATGAAGTTTACGAACACCGTTTCTGCGTTCGAGACATTGCCCCAGAGAGCTACTTGAGAGGCTATTCGGCGTGTATGTGTTTCCTTCCTTCTTTTTTTTCCTTGTACGTGTGAGGTCATATGTTTTATGTTCTTGTAAAGCTGCTGTATATAATGTTGTGTAATTGTAATCATAAACGATGAAAACAGCTTGAGTGTTATTAGGATCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3298#0 GCATTACAGTAAATGGAGTGCAACTCCCAAGACACGGATTTATTGACATCACCCACCATC 60 consensus_3298#1 ------------------------------------------------------------ consensus_3298#0 AAAGGACTTTTATCGTGTTTTTAGTGGTCTTCCAGTATAGCTACTTGGAAGAGAGCATCA 120 consensus_3298#1 --------------------------------------GTCGACCCACGCTGTCCGATCA 22 * ** **** consensus_3298#0 ATCCTTCGAGGAAACC-CAGAAATGCTGGGTGACTCTGTAGCTTGGGCTGGCTGT-AC-C 177 consensus_3298#1 ATCCTTCGAGGAAACCACAGAAAT-TTGGGTGACTCTGTAGCTTGGCCTGCCTGTCACAC 81 **************** ******* ******************** *** **** ** * consensus_3298#0 ATCATGTATTTACTGGGACAGCA-GCAGCATTTTGAGCTTTTCGACTTCTCTT-ACCNAT 235 consensus_3298#1 ATCATGTATTTACTGGGACAGCACGCAGCATTTTGAGCTTTTCGACTTCTCTTGACCCAT 141 *********************** ***************************** *** ** consensus_3298#0 TTCTCAACGTGGCAGAAGTAGAAAATGCAAC-AGTTTCACTTTATCA-ATATTCAGATAG 293 consensus_3298#1 TTCTCAACGTGCCAGAAGTAGAAAATGCCACCAGTTTCACTTTATCACATATTCAGATAG 201 *********** **************** ** *************** ************ consensus_3298#0 GAACNAAAGCCCGAATTTCTTGCAGGGTTACGAGGGTATCCTTGAAGCGATGAGGAAAGC 353 consensus_3298#1 GAACCAAAGCCCGAATTTCTTGCAGGGTTACGAGGGTATCCTTGAAGCGATGAGGAAAGC 261 **** ******************************************************* consensus_3298#0 CA-GGAGGCTCAATAACCATGTTTTCTCCATGTTGAGAGCACGGTGCCCCCTCGAGGACA 412 consensus_3298#1 CACGGAGGCTCAATAACCATGTTTTCTCCATGTTGAGAGCACGGTGCCCCCTCGAGGACA 321 ** ********************************************************* consensus_3298#0 AGATTGCATGTGCTATCAAGCCAAGTGGGGCGCCTCTTCACCGTATGAAGTTTACGAACA 472 consensus_3298#1 AGATTGCATGTGCTATCAAGCCAAGTGGGGCGCCTCTTCACCGTATGAAGTTTACGAACA 381 ************************************************************ consensus_3298#0 CCGTTTCTGCGTTCGAGACATTGCCACAGAGAGCTACTTGAGAGGCTATTCGGCGTGTAT 532 consensus_3298#1 CCGTTTCTGCGTTCGAGACATTGCCCCAGAGAGCTACTTGAGAGGCTATTCGGCGTGTAT 441 ************************* ********************************** consensus_3298#0 GTGTTTCCTTC----TTTTTTTTCCTTGTACGTGTGAGGTCATATGTTTTATGTTCTTGT 588 consensus_3298#1 GTGTTTCCTTCCTTCTTTTTTTTCCTTGTACGTGTGAGGTCATATGTTTTATGTTCTTGT 501 *********** ********************************************* consensus_3298#0 AAAGCTGCTGTATATAATGTTGTGTAATTGTAATAATAAACGATGAAAACNGCTTGAGTG 648 consensus_3298#1 AAAGCTGCTGTATATAATGTTGTGTAATTGTAATCATAAACGATGAAAACAGCTTGAGTG 561 ********************************** *************** ********* consensus_3298#0 TTATTAGGATCTATCTTGTTGTATACGCAATTAGAATCTTATGTTTAAAAA 699 consensus_3298#1 TTATTAGGATCAAAAAAAAAA------------------------------ 582 *********** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||