These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3304#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 793 fasta sequence [CTCCGCCGCCGCCGATGTTGTCCGCCGCGCGATCCGGAGCCCTGGCGCGATGGCGTCCCCGGGAGACCCTCCTCCCTCGCCTCCTCTCCTCCTCCGCCACCGGCGCGGCCTCCCCGCCTGCGCGGCAGGCGGCGCTGCTGGAGCTCCCGGAGGTGGAGAAGGTGCTGCGCGACGTGCGGGCGGGGGACGTGCGCGTCTTCCCCGTCGGCGAGGGCGGGCTGCATGGCGGCTCCTGCGCCGACTACATGGTCGTCGCCACCGGCCGCTCCGACTGGCACGTCCGCAACATCGCCCAGGCTCTACTCTACAAGATAAAACAGAAGCAGAAGGGTTCTGATAGAATATTGATGCCAAGTGTTGAAGGCCAGCAAGCTGGAAAGTGGATTGTCATTGATTCTGGAAGTATCATCATTCATGCACTTGAAGAAAGAGCAAGAGAATATTATGATTTGGAAAGCATTTGGACAAAAGAAGTGTCTCCAAACATTTCTGTTCAGGAATTGGAAACTTCCCTTGTGAAGACACGCCGCAGGGACCACTCTCAGAAACCCATGAAGAGCATTTGAGTACATGAGCTAGTTCCATGATCTATGATCTGTGATTGTGAGTGTGTAATCCATCAGATTTGTGTCATCTATTTCTGATGTAGATATTGTGTGGAACGAACCGCACCACTGGCCACCATTAACTTAAGCTTCATTTACATTTCATCTATGGTTTATTCCAGGTCAACAAAGATGATAAAGTGGTGTCAAGCATGTATTTGCATCCAATGAATTTTGAGGATGGGTGA] [+] EMBL AK068925 [CTCCGCCGCCGCCGATGTTGTCCGCCGCGCGATCCGGAGCCCTGGCGCGATGGCGTCCCCGGGAGACCCTCCTCCCTCGCCTCCTCTCCTCCTCCGCCACCGGCGCGGCCTCCCCGCCTGCGCGGCAGGCGGCGCTGCTGGAGCTCCCGGAGGTGGAGAAGGTGCTGCGCGACGTGCGGGCGGGGGACGTGCGCGTCTTCCCCGTCGGCGAGGGCGGGCTGCATGGCGGCTCCTGCGCCGACTACATGGTCGTCGCCACCGGCCGCTCCGACTGGCACGTCCGCAACATCGCCCAGGCTCTACTCTACAAGATAAAACAGAAGCAGAAGGGTTCTGATAGAATATTGATGCCAAGTGTTGAAGGCCAGCAAGCTGGAAAGTGGATTGTCATTGATTCTGGAAGTATCATCATTCATGCACTTGAAGAAAGAGCAAGAGAATATTATGATTTGGAAAGCATTTGGACAAAAGAAGTGTCTCCAAACATTTCTGTTCAGGAATTGGAAACTTCCCTTGTGAAGACACGCCGCAGGGACCACTCTCAGAAACCCATGAAGAGCATTTGAGTACATGAGCTAGTTCCATGATCTATGATCTGTGATTGTGAGTGTGTAATCCATCAGATTTGTGTCATCTATTTCTGATGTAGATATTGTGTGGAACGAACCGCACCACTGGCCACCATTAACTTAAGCTTCATTTACATTTCATCTATGGTTTATTCCAGGTCAACAAAGATGATAAAGTGGTGTCAAGCATGTATTTGCATCCAATGAATTTTGAGGATGGGTGA] consensusID : consensus_3304#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence [AGGGGGATCACACGGAATTGGAAACTTCCCTTGTGAAGACACGTCGCAGGGACCACTCTCAGAAACCCATGAAGAGCATTTGAGTACATGAGCTAGTTCCATGATCTATGATCTGTGATTGTCAACAAAGATGATAAAGTGGTGTCAAGCATGTATTTGCATCCAATGAATTTTGAGGATGGGTGAGATGCTTGTGAATGAGATTACCAAGATGCTGGACACCTTGTTTCTGTGGGCCTCTCTGCTTGCCTATGTACTGTGGTTTCTCTTTCTTTCGTTGACAGTATGGTCTGTACTTTTGATGACTCCTTTCAAGCTCAAGCAAAGACAATGTATGTTATTCTTTTTCTTTTTTATCGCCCCCACGCTGGTGGTTTTTAGAGGGTCATGTTCGCTCTCTCGATATGGCGCCCTTCCCCCCTAAGAGTTGTACCTGTAAGGCTGTAACTGTAAGTTGTGCAGAGAACTCTAACCTGGGGAGTGTTAACGATCAGATATTGTATGAGCAAAATGCATAGATAACACTAGAAATCT] [+] EMBL CA766655 [AGGGGGATCACACGGAATTGGAAACTTCCCTTGTGAAGACACGTCGCAGGGACCACTCTCAGAAACCCATGAAGAGCATTTGAGTACATGAGCTAGTTCCATGATCTATGATCTGTGATTGTCAACAAAGATGATAAAGTGGTGTCAAGCATGTATTTGCATCCAATGAATTTTGAGGATGGGTGAGATGCTTGTGAATGAGATTACCAAGATGCTGGACACCTTGTTTCTGTGGGCCTCTCTGCTTGCCTATGTACTGTGGTTTCTCTTTCTTTCGTTGACAGTATGGTCTGTACTTTTGATGACTCCTTTCAAGCTCAAGCAAAGACAATGTATGTTATTCTTTTTCTTTTTTATCGCCCCCACGCTGGTGGTTTTTAGAGGGTCATGTTCGCTCTCTCGATATGGCGCCCTTCCCCCCTAAGAGTTGTACCTGTAAGGCTGTAACTGTAAGTTGTGCAGAGAACTCTAACCTGGGGAGTGTTAACGATCAGATATTGTATGAGCAAAATGCATAGATAACACTAGAAATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3304#0 CTCCGCCGCCGCCGATGTTGTCCGCCGCGCGATCCGGAGCCCTGGCGCGATGGCGTCCCC 60 consensus_3304#1 ------------------------------------------------------------ consensus_3304#0 GGGAGACCCTCCTCCCTCGCCTCCTCTCCTCCTCCGCCACCGGCGCGGCCTCCCCGCCTG 120 consensus_3304#1 ------------------------------------------------------------ consensus_3304#0 CGCGGCAGGCGGCGCTGCTGGAGCTCCCGGAGGTGGAGAAGGTGCTGCGCGACGTGCGGG 180 consensus_3304#1 ---------------AGGGGGATCACACGGAATTGGA-AACTTCCCTTGTGAAGACACGT 44 * *** * * **** **** ** * * * ** * * consensus_3304#0 CGGGGGACGTGCGCGTCTTCCCCGTCGGCGAGGGCGGGCTGCATGGCGGCTCCTGCGCCG 240 consensus_3304#1 CGCAGGGACCAC---TCTCAGAAACCCATGAAGA------GCATTTGAGTACATGAGCTA 95 ** ** * *** * ** * **** * * ** ** consensus_3304#0 ACTACATGGTC-GTCGCCACCGGCCGCTCCGACTGGCACGTCCGCAACATCGCCCAGGCT 299 consensus_3304#1 GTTCCATGATCTATGATCTGTGATTGTCAACAAAGATGATAAAGTGGTGTCAAGCATGTA 155 * **** ** * * * * * * * ** ** * consensus_3304#0 CTACTCTACAAGATAAAACAGAAGCAGAAGGGTTCTGATAGAATATTGATGCCAAG-TGT 358 consensus_3304#1 TTTGCATCCAATGAATTTTGAGGATGGGTGAGATGCTTGTGAATGAGATTACCAAGATGC 215 * * *** * * * * * **** * ***** ** consensus_3304#0 TGAAGGCCAGCAAGCTGGAAAGTGGATTG-TCATTGATTCTGGAAGTATCATCATTCATG 417 consensus_3304#1 TGGACACCTTGTTTCTGTGGGCCTCTCTGCTTGCCTATGTACTGTGGTTTCTCTTTCTTT 275 ** * ** *** ** * ** * * ** *** * consensus_3304#0 CACTTGAAGAAAGAGCAAGAGAATATTATGATTTGGAAAGCATTTGGACAAAAGAAGTGT 477 consensus_3304#1 CG-TTGACAGTATGGTCTGTACTTTTGATGACTCCTTTCAAGCTCAAGCAAAGACAATGT 334 * **** * * * * * **** * * **** * *** consensus_3304#0 CTCCAAACATTTCTGTTCAGGAATTGGAAACTTCCCTTGTGAAGACACGCCGCAGGGACC 537 consensus_3304#1 ATGTTATTCTTTTTCTTT-----TTTATCGCCCCCACGCTGGTGGTTTTTAG--AGGGTC 387 * * *** * ** ** * ** ** * * ** * consensus_3304#0 ACTCTCAGAAACCCATGAAGAGCATTTGAGTACATGAGCTAGTTCCATGATCTATGATCT 597 consensus_3304#1 ATGTTCGCTCTCTCGATATGGCGCCCTTCCCCCCTAAG--AGTTGTACC-TGTAAGG-CT 443 * ** * * * * * * * ** **** * * ** * ** consensus_3304#0 GTGATTGTGAGT-GTGTAATCCA-TCAGATTTGTGTCATCTATTTCTGATGTAGATATTG 655 consensus_3304#1 GTAACTGTAAGTTGTGCAGAGAACTCTAACCTGGGGAGT--GTTAACGAT-CAGATATTG 500 ** * *** *** *** * * ** * ** * * ** *** ******** consensus_3304#0 TGTGGAACGAACCGCACCACTGGCCACCATTAACTTAAGCTTCATTTACATTTCATCTAT 715 consensus_3304#1 TATG-AGCAAAATGCATAGATAAC-ACTAGAAATCT------------------------ 534 * ** * * ** *** * * ** * ** * consensus_3304#0 GGTTTATTCCAGGTCAACAAAGATGATAAAGTGGTGTCAAGCATGTATTTGCATCCAATG 775 consensus_3304#1 ------------------------------------------------------------ consensus_3304#0 AATTTTGAGGATGGGTGA 793 consensus_3304#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||