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Oryza sativa
cluster # 3304 cluster # 3304       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3304#0 length = 793 sequences # 1  
consensus_3304#1 length = 534 sequences # 1  

consensusID : consensus_3304#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 793
fasta sequence
                              [CTCCGCCGCCGCCGATGTTGTCCGCCGCGCGATCCGGAGCCCTGGCGCGATGGCGTCCCCGGGAGACCCTCCTCCCTCGCCTCCTCTCCTCCTCCGCCACCGGCGCGGCCTCCCCGCCTGCGCGGCAGGCGGCGCTGCTGGAGCTCCCGGAGGTGGAGAAGGTGCTGCGCGACGTGCGGGCGGGGGACGTGCGCGTCTTCCCCGTCGGCGAGGGCGGGCTGCATGGCGGCTCCTGCGCCGACTACATGGTCGTCGCCACCGGCCGCTCCGACTGGCACGTCCGCAACATCGCCCAGGCTCTACTCTACAAGATAAAACAGAAGCAGAAGGGTTCTGATAGAATATTGATGCCAAGTGTTGAAGGCCAGCAAGCTGGAAAGTGGATTGTCATTGATTCTGGAAGTATCATCATTCATGCACTTGAAGAAAGAGCAAGAGAATATTATGATTTGGAAAGCATTTGGACAAAAGAAGTGTCTCCAAACATTTCTGTTCAGGAATTGGAAACTTCCCTTGTGAAGACACGCCGCAGGGACCACTCTCAGAAACCCATGAAGAGCATTTGAGTACATGAGCTAGTTCCATGATCTATGATCTGTGATTGTGAGTGTGTAATCCATCAGATTTGTGTCATCTATTTCTGATGTAGATATTGTGTGGAACGAACCGCACCACTGGCCACCATTAACTTAAGCTTCATTTACATTTCATCTATGGTTTATTCCAGGTCAACAAAGATGATAAAGTGGTGTCAAGCATGTATTTGCATCCAATGAATTTTGAGGATGGGTGA]

[+] EMBL AK068925             [CTCCGCCGCCGCCGATGTTGTCCGCCGCGCGATCCGGAGCCCTGGCGCGATGGCGTCCCCGGGAGACCCTCCTCCCTCGCCTCCTCTCCTCCTCCGCCACCGGCGCGGCCTCCCCGCCTGCGCGGCAGGCGGCGCTGCTGGAGCTCCCGGAGGTGGAGAAGGTGCTGCGCGACGTGCGGGCGGGGGACGTGCGCGTCTTCCCCGTCGGCGAGGGCGGGCTGCATGGCGGCTCCTGCGCCGACTACATGGTCGTCGCCACCGGCCGCTCCGACTGGCACGTCCGCAACATCGCCCAGGCTCTACTCTACAAGATAAAACAGAAGCAGAAGGGTTCTGATAGAATATTGATGCCAAGTGTTGAAGGCCAGCAAGCTGGAAAGTGGATTGTCATTGATTCTGGAAGTATCATCATTCATGCACTTGAAGAAAGAGCAAGAGAATATTATGATTTGGAAAGCATTTGGACAAAAGAAGTGTCTCCAAACATTTCTGTTCAGGAATTGGAAACTTCCCTTGTGAAGACACGCCGCAGGGACCACTCTCAGAAACCCATGAAGAGCATTTGAGTACATGAGCTAGTTCCATGATCTATGATCTGTGATTGTGAGTGTGTAATCCATCAGATTTGTGTCATCTATTTCTGATGTAGATATTGTGTGGAACGAACCGCACCACTGGCCACCATTAACTTAAGCTTCATTTACATTTCATCTATGGTTTATTCCAGGTCAACAAAGATGATAAAGTGGTGTCAAGCATGTATTTGCATCCAATGAATTTTGAGGATGGGTGA]


>consensus_3304#0 CTCCGCCGCCGCCGATGTTGTCCGCCGCGCGATCCGGAGCCCTGGCGCGATGGCGTCCCC GGGAGACCCTCCTCCCTCGCCTCCTCTCCTCCTCCGCCACCGGCGCGGCCTCCCCGCCTG CGCGGCAGGCGGCGCTGCTGGAGCTCCCGGAGGTGGAGAAGGTGCTGCGCGACGTGCGGG CGGGGGACGTGCGCGTCTTCCCCGTCGGCGAGGGCGGGCTGCATGGCGGCTCCTGCGCCG ACTACATGGTCGTCGCCACCGGCCGCTCCGACTGGCACGTCCGCAACATCGCCCAGGCTC TACTCTACAAGATAAAACAGAAGCAGAAGGGTTCTGATAGAATATTGATGCCAAGTGTTG AAGGCCAGCAAGCTGGAAAGTGGATTGTCATTGATTCTGGAAGTATCATCATTCATGCAC TTGAAGAAAGAGCAAGAGAATATTATGATTTGGAAAGCATTTGGACAAAAGAAGTGTCTC CAAACATTTCTGTTCAGGAATTGGAAACTTCCCTTGTGAAGACACGCCGCAGGGACCACT CTCAGAAACCCATGAAGAGCATTTGAGTACATGAGCTAGTTCCATGATCTATGATCTGTG ATTGTGAGTGTGTAATCCATCAGATTTGTGTCATCTATTTCTGATGTAGATATTGTGTGG AACGAACCGCACCACTGGCCACCATTAACTTAAGCTTCATTTACATTTCATCTATGGTTT ATTCCAGGTCAACAAAGATGATAAAGTGGTGTCAAGCATGTATTTGCATCCAATGAATTT TGAGGATGGGTGA



consensusID : consensus_3304#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 534
fasta sequence
                              [AGGGGGATCACACGGAATTGGAAACTTCCCTTGTGAAGACACGTCGCAGGGACCACTCTCAGAAACCCATGAAGAGCATTTGAGTACATGAGCTAGTTCCATGATCTATGATCTGTGATTGTCAACAAAGATGATAAAGTGGTGTCAAGCATGTATTTGCATCCAATGAATTTTGAGGATGGGTGAGATGCTTGTGAATGAGATTACCAAGATGCTGGACACCTTGTTTCTGTGGGCCTCTCTGCTTGCCTATGTACTGTGGTTTCTCTTTCTTTCGTTGACAGTATGGTCTGTACTTTTGATGACTCCTTTCAAGCTCAAGCAAAGACAATGTATGTTATTCTTTTTCTTTTTTATCGCCCCCACGCTGGTGGTTTTTAGAGGGTCATGTTCGCTCTCTCGATATGGCGCCCTTCCCCCCTAAGAGTTGTACCTGTAAGGCTGTAACTGTAAGTTGTGCAGAGAACTCTAACCTGGGGAGTGTTAACGATCAGATATTGTATGAGCAAAATGCATAGATAACACTAGAAATCT]

[+] EMBL CA766655             [AGGGGGATCACACGGAATTGGAAACTTCCCTTGTGAAGACACGTCGCAGGGACCACTCTCAGAAACCCATGAAGAGCATTTGAGTACATGAGCTAGTTCCATGATCTATGATCTGTGATTGTCAACAAAGATGATAAAGTGGTGTCAAGCATGTATTTGCATCCAATGAATTTTGAGGATGGGTGAGATGCTTGTGAATGAGATTACCAAGATGCTGGACACCTTGTTTCTGTGGGCCTCTCTGCTTGCCTATGTACTGTGGTTTCTCTTTCTTTCGTTGACAGTATGGTCTGTACTTTTGATGACTCCTTTCAAGCTCAAGCAAAGACAATGTATGTTATTCTTTTTCTTTTTTATCGCCCCCACGCTGGTGGTTTTTAGAGGGTCATGTTCGCTCTCTCGATATGGCGCCCTTCCCCCCTAAGAGTTGTACCTGTAAGGCTGTAACTGTAAGTTGTGCAGAGAACTCTAACCTGGGGAGTGTTAACGATCAGATATTGTATGAGCAAAATGCATAGATAACACTAGAAATCT]


>consensus_3304#1 AGGGGGATCACACGGAATTGGAAACTTCCCTTGTGAAGACACGTCGCAGGGACCACTCTC AGAAACCCATGAAGAGCATTTGAGTACATGAGCTAGTTCCATGATCTATGATCTGTGATT GTCAACAAAGATGATAAAGTGGTGTCAAGCATGTATTTGCATCCAATGAATTTTGAGGAT GGGTGAGATGCTTGTGAATGAGATTACCAAGATGCTGGACACCTTGTTTCTGTGGGCCTC TCTGCTTGCCTATGTACTGTGGTTTCTCTTTCTTTCGTTGACAGTATGGTCTGTACTTTT GATGACTCCTTTCAAGCTCAAGCAAAGACAATGTATGTTATTCTTTTTCTTTTTTATCGC CCCCACGCTGGTGGTTTTTAGAGGGTCATGTTCGCTCTCTCGATATGGCGCCCTTCCCCC CTAAGAGTTGTACCTGTAAGGCTGTAACTGTAAGTTGTGCAGAGAACTCTAACCTGGGGA GTGTTAACGATCAGATATTGTATGAGCAAAATGCATAGATAACACTAGAAATCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3304#0      CTCCGCCGCCGCCGATGTTGTCCGCCGCGCGATCCGGAGCCCTGGCGCGATGGCGTCCCC 60
consensus_3304#1      ------------------------------------------------------------
                                                                                  

consensus_3304#0      GGGAGACCCTCCTCCCTCGCCTCCTCTCCTCCTCCGCCACCGGCGCGGCCTCCCCGCCTG 120
consensus_3304#1      ------------------------------------------------------------
                                                                                  

consensus_3304#0      CGCGGCAGGCGGCGCTGCTGGAGCTCCCGGAGGTGGAGAAGGTGCTGCGCGACGTGCGGG 180
consensus_3304#1      ---------------AGGGGGATCACACGGAATTGGA-AACTTCCCTTGTGAAGACACGT 44
                                      *  *** * * ****  **** **  * *   * ** *    * 

consensus_3304#0      CGGGGGACGTGCGCGTCTTCCCCGTCGGCGAGGGCGGGCTGCATGGCGGCTCCTGCGCCG 240
consensus_3304#1      CGCAGGGACCAC---TCTCAGAAACCCATGAAGA------GCATTTGAGTACATGAGCTA 95
                      **  **     *   ***       *   ** *       ****    *  * ** **  

consensus_3304#0      ACTACATGGTC-GTCGCCACCGGCCGCTCCGACTGGCACGTCCGCAACATCGCCCAGGCT 299
consensus_3304#1      GTTCCATGATCTATGATCTGTGATTGTCAACAAAGATGATAAAGTGGTGTCAAGCATGTA 155
                        * **** **  *   *   *   *     *  *        *     **   ** *  

consensus_3304#0      CTACTCTACAAGATAAAACAGAAGCAGAAGGGTTCTGATAGAATATTGATGCCAAG-TGT 358
consensus_3304#1      TTTGCATCCAATGAATTTTGAGGATGGGTGAGATGCTTGTGAATGAGATTACCAAGATGC 215
                       *    * ***   *           *  * * *      ****     * ***** ** 

consensus_3304#0      TGAAGGCCAGCAAGCTGGAAAGTGGATTG-TCATTGATTCTGGAAGTATCATCATTCATG 417
consensus_3304#1      TGGACACCTTGTTTCTGTGGGCCTCTCTGCTTGCCTATGTACTGTGGTTTCTCTTTCTTT 275
                      ** *  **      ***          ** *     **       *  *  ** *** * 

consensus_3304#0      CACTTGAAGAAAGAGCAAGAGAATATTATGATTTGGAAAGCATTTGGACAAAAGAAGTGT 477
consensus_3304#1      CG-TTGACAGTATGGTCTGTACTTTTGATGACTCCTTTCAAGCTCAAGCAAAGACAATGT 334
                      *  ****    *  *   *    * * **** *          *    ****   * ***

consensus_3304#0      CTCCAAACATTTCTGTTCAGGAATTGGAAACTTCCCTTGTGAAGACACGCCGCAGGGACC 537
consensus_3304#1      ATGTTATTCTTTTTCTTT-----TTTATCGCCCCCACGCTGGTGGTTTTTAG--AGGGTC 387
                       *   *   *** * **      **     *  **    **  *       *   **  *

consensus_3304#0      ACTCTCAGAAACCCATGAAGAGCATTTGAGTACATGAGCTAGTTCCATGATCTATGATCT 597
consensus_3304#1      ATGTTCGCTCTCTCGATATGGCGCCCTTCCCCCCTAAG--AGTTGTACC-TGTAAGG-CT 443
                      *   **     * *   * *      *     * * **  ****  *   * ** *  **

consensus_3304#0      GTGATTGTGAGT-GTGTAATCCA-TCAGATTTGTGTCATCTATTTCTGATGTAGATATTG 655
consensus_3304#1      GTAACTGTAAGTTGTGCAGAGAACTCTAACCTGGGGAGT--GTTAACGAT-CAGATATTG 500
                      ** * *** *** *** *    * **  *  ** *   *   **   ***  ********

consensus_3304#0      TGTGGAACGAACCGCACCACTGGCCACCATTAACTTAAGCTTCATTTACATTTCATCTAT 715
consensus_3304#1      TATG-AGCAAAATGCATAGATAAC-ACTAGAAATCT------------------------ 534
                      * ** * * **  ***    *  * ** *  **  *                        

consensus_3304#0      GGTTTATTCCAGGTCAACAAAGATGATAAAGTGGTGTCAAGCATGTATTTGCATCCAATG 775
consensus_3304#1      ------------------------------------------------------------
                                                                                  

consensus_3304#0      AATTTTGAGGATGGGTGA 793
consensus_3304#1      ------------------
                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)