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Oryza sativa
cluster # 3309 cluster # 3309       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3309#0 length = 1442 sequences # 2  

consensusID : consensus_3309#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1442
fasta sequence
                              [AAACCCAATTCACCAAAGCCAAAGCAAGAACTAGATCAAGAAGAGAGAAGAAGCCAAGATAATCCAGCAGAAATAATTTCAGAAATCTATAGCTAGATAGATCATAGATGCTGCCTCTGCTGAACATGCAAGCTGAAGCTGCTGGTGGCGATGGTGGTGATGCAGAGAAGAAGAGTGGCAACAACAAGCAGATGATGGTGGCGGCGAAGGTGTCCATCTCCATTCTGGTGATGTCGCTGCCGGTGCTCTACGTCTCCTTCCTCCGCATCCCGCCGGCGACGCTCTTCCGGGACACCACCTTCTGGTTCCTCATGTCCAACTCCATCATCATCGTCATCGCCGCCGACTCCGGCATGCTCTTCTTCGCCGCTAGGCCCGCCTCAAGCTCCGGCGAGCTTCAAGCCATGGTTGTCACCGATGTCAGCCTCAGCCATGCATTGGTGGTGGCGCCGCCGAGAGGTGGCCAAGAAGACGATGACGGTGTTGTCGTCGCCGGCGAGCCGGCGGAGGAGGAGTCGACGATGATGTTGGTGCCGTACTACGGCGGCGAGGTGGTGCAGGCAGCAGCAAGGCCGACAAGGCTGACGGCGAGCAGTGAGGCGGAGAGGACGACGACGATGGCGCGTCGCCGTCGTCGAAGCAGGTCGCACTCGTCGCACCACGCGCTGATGATGACGCCGCCGGTGGTGCAGGAGAAGAGCATCGTTGTCGTGAGGGAGGAGAAGCTCCGGCGAACTGCAACGGAGCGGCCGCCGGAGCCGGAGGAGGAGATGACAACGACGAGCAGCAGCGAGTACTCGCGGCTCTCCGACGAGGAGCTGAACCGGCGCGTGGAGGAGTTCATCGCCAGGTTCAACATGGAGATCAGGCTGCAGCTCGAGAAGGAACAAGAACAAGCTGCAGCTGCTTGACATATGCAAGAATCCGCCATGGCCATGTACAAAATCGATCAAGTTCAAGCTCAAAGCTCAAAGGCTCTAGCTAGCTCCATGTCATGTCCATGTCCATGTAGATGTTGATGCGAGTTTGTTAATTAGGTTGAGCTTTTGGACATGGAGCTAGCTAGCTAGGCATAAGCTCCATGTCACAGAAAATAGGTCGGTTTTTTAAAAACTCCCACAAAATTCCTCTAGGCCTATTCAGATCGGAGGAATTTTGCAGGAGTTTTTAAGAAACCAAGCTATTTTCTGTGAAAATTTTGTAAAATTCCTACGTTTCAAAGAGCCAGCAGTAGCTATAGCTAAGTAGTTAGCTAGTAGCTTCTTCTTGCTTGGTTCCTCTTGGTAGTCTTCTGCATCCATAGATGCAGGAGAGTGAGATGAGAGGAGCTATATTCTCATGAGGGATCATATAATTTGTAGTTTGTATTTGTGTACATCATCAAGAGATCAGATCAGAACAATACAAAAGATGGAGTAAAAAAAAAAAAAAAAAAAAACACT]

[+] EMBL AK070105             [AAACCCAATTCACCAAAGCCAAAGCAAGAACTAGATCAAGAAGAGAGAAGAAGCCAAGATAATCCAGCAGAAATAATTTCAGAAATCTATAGCTAGATAGATCATAGATGCTGCCTCTGCTGAACATGCAAGCTGAAGCTGCTGGTGGCGATGGTGGTGATGCAGAGAAGAAGAGTGGCAACAACAAGCAGATGATGGTGGCGGCGAAGGTGTCCATCTCCATTCTGGTGATGTCGCTGCCGGTGCTCTACGTCTCCTTCCTCCGCATCCCGCCGGCGACGCTCTTCCGGGACACCACCTTCTGGTTCCTCATGTCCAACTCCATCATCATCGTCATCGCCGCCGACTCCGGCATGCTCTTCTTCGCCGCTAGGCCCGCCTCAAGCTCCGGCGAGCTTCAAGCCATGGTTGTCACCGATGTCAGCCTCAGCCATGCATTGGTGGTGGCGCCGCCGAGAGGTGGCCAAGAAGACGATGACGGTGTTGTCGTCGCCGGCGAGCCGGCGGAGGAGGAGTCGACGATGATGTTGGTGCCGTACTACGGCGGCGAGGTGGTGCAGGCAGCAGCAAGGCCGACAAGGCTGACGGCGAGCAGTGAGGCGGAGAGGACGACGACGATGGCGCGTCGCCGTCGTCGAAGCAGGTCGCACTCGTCGCACCACGCGCTGATGATGACGCCGCCGGTGGTGCAGGAGAAGAGCATCGTTGTCGTGAGGGAGGAGAAGCTCCGGCGAACTGCAACGGAGCGGCCGCCGGAGCCGGAGGAGGAGATGACAACGACGAGCAGCAGCGAGTACTCGCGGCTCTCCGACGAGGAGCTGAACCGGCGCGTGGAGGAGTTCATCGCCAGGTTCAACATGGAGATCAGGCTGCAGCTCGAGAAGGAACAAGAACAAGCTGCAGCTGCTTGACATATGCAAGAATCCGCCATGGCCATGTACAAAATCGATCAAGTTCAAGCTCAAAGCTCAAAGGCTCTAGCTAGCTCCATGTCATGTCCATGTCCATGTAGATGTTGATGCGAGTTTGTTAATTAGGTTGAGCTTTTGGACATGGAGCTAGCTAGCTAGGCATAAGCTCCATGTCACAGAAAATAGGTCGGTTTTTTAAAAACTCCCACAAAATTCCTCTAGGCCTATTCAGATCGGAGGAATTTTGCAGGAGTTTTTAAGAAACCAAGCTATTTTCTGTGAAAATTTTGTAAAATTCCTACGTTTCAAAGAGCCAGCAGTAGCTATAGCTAAGTAGTTAGCTAGTAGCTTCTTCTTGCTTGGTTCCTCTTGGTAGTCTTCTGCATCCATAGATGCAGGAGAGTGAGATGAGAGGAGCTATATTCTCATGAGGGATCATATAATTTGTAGTTTGTATTTGTGTACATCATCAAGAGATCAGATC                                               ]
[-] EMBL CF295312             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AGGCCTATTCAGATCGGAGGAATTTTGCAGGAGTTTTTAAGAAACCAAGGTATTTTCTGTGAAAATTTTGTAAAATTCCTACGTTTCAAAGAGCCAGCAGTAGCTATAGCTAAGTAGTTAACAAGTAGCTTCTTCTTGCTTGGTACCTATTGGTAGTCTTCTGCATCCATAGATGCAGGAGAGTGAGATGAAAAAAGCTATATTCTCATGAGGGATCATATAATTTGTATTTTGTATTTGTGTACATCATCAAGAGATCAGATCAGAACAATACAAAAGATGGAGTAAAAAAAAAAAAAAAAAAAAACACT]


>consensus_3309#0 AAACCCAATTCACCAAAGCCAAAGCAAGAACTAGATCAAGAAGAGAGAAGAAGCCAAGAT AATCCAGCAGAAATAATTTCAGAAATCTATAGCTAGATAGATCATAGATGCTGCCTCTGC TGAACATGCAAGCTGAAGCTGCTGGTGGCGATGGTGGTGATGCAGAGAAGAAGAGTGGCA ACAACAAGCAGATGATGGTGGCGGCGAAGGTGTCCATCTCCATTCTGGTGATGTCGCTGC CGGTGCTCTACGTCTCCTTCCTCCGCATCCCGCCGGCGACGCTCTTCCGGGACACCACCT TCTGGTTCCTCATGTCCAACTCCATCATCATCGTCATCGCCGCCGACTCCGGCATGCTCT TCTTCGCCGCTAGGCCCGCCTCAAGCTCCGGCGAGCTTCAAGCCATGGTTGTCACCGATG TCAGCCTCAGCCATGCATTGGTGGTGGCGCCGCCGAGAGGTGGCCAAGAAGACGATGACG GTGTTGTCGTCGCCGGCGAGCCGGCGGAGGAGGAGTCGACGATGATGTTGGTGCCGTACT ACGGCGGCGAGGTGGTGCAGGCAGCAGCAAGGCCGACAAGGCTGACGGCGAGCAGTGAGG CGGAGAGGACGACGACGATGGCGCGTCGCCGTCGTCGAAGCAGGTCGCACTCGTCGCACC ACGCGCTGATGATGACGCCGCCGGTGGTGCAGGAGAAGAGCATCGTTGTCGTGAGGGAGG AGAAGCTCCGGCGAACTGCAACGGAGCGGCCGCCGGAGCCGGAGGAGGAGATGACAACGA CGAGCAGCAGCGAGTACTCGCGGCTCTCCGACGAGGAGCTGAACCGGCGCGTGGAGGAGT TCATCGCCAGGTTCAACATGGAGATCAGGCTGCAGCTCGAGAAGGAACAAGAACAAGCTG CAGCTGCTTGACATATGCAAGAATCCGCCATGGCCATGTACAAAATCGATCAAGTTCAAG CTCAAAGCTCAAAGGCTCTAGCTAGCTCCATGTCATGTCCATGTCCATGTAGATGTTGAT GCGAGTTTGTTAATTAGGTTGAGCTTTTGGACATGGAGCTAGCTAGCTAGGCATAAGCTC CATGTCACAGAAAATAGGTCGGTTTTTTAAAAACTCCCACAAAATTCCTCTAGGCCTATT CAGATCGGAGGAATTTTGCAGGAGTTTTTAAGAAACCAAGCTATTTTCTGTGAAAATTTT GTAAAATTCCTACGTTTCAAAGAGCCAGCAGTAGCTATAGCTAAGTAGTTAGCTAGTAGC TTCTTCTTGCTTGGTTCCTCTTGGTAGTCTTCTGCATCCATAGATGCAGGAGAGTGAGAT GAGAGGAGCTATATTCTCATGAGGGATCATATAATTTGTAGTTTGTATTTGTGTACATCA TCAAGAGATCAGATCAGAACAATACAAAAGATGGAGTAAAAAAAAAAAAAAAAAAAAACA CT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)