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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_332#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1432 fasta sequence
[ATTTCAGCGACCCCGCTTCGACGGCGGCGGCGGCGGCGCCGCCGGGCGGCGGACTACGTGGCGACGGCCGTCCAGTAGCTGGTCATGCAGGCGCTGGCCGGCGTGCTGATGATCCGCGCCCACTCCCACCCGCCGCCGCACCCGTCCGCTCCTCGCCGCAGCTCCGCCAGCTGCAACCACGAGTCCACGACCAAAAAAAAAAGCTCCGAAAATGGGCTGCTCAGTCAAGATGGTTTCTGACGCATTGGACCACATAAAAGAGAGATAAGGCACATCCTTCCTGTTTACTTGACATGGGGGCAGATTCCGTTGAGGCTAAAATATCCACATCAGGACTGGATCATTTCTATCTGCTTGATCATTGTCATCGATCTCTGCATCCTTCTCCTCCTGACTAGAAATTGAAGCACGGCCATGTCTCCTTTCCGGTTGCTCGATTGATCCTACCTTCGTGCAGGTATCGTTGATGCAGGACATCAAATTGAAAGGCATGCTTATTTCCACCCAGGATGTAAGGGGCACCATGAATGAACAGAAGCAGCAGACTCCAGGAGAACACATGCTACAAAACATAGGAACCACAACAGGAATCTGCAACTGCAAGATGGATCATCCATGGCCATCTTATAGGACTTATCCTCGATGTTGATGCGTGCCGGCGTCCAAGGAGAATGAAGTATGGGAAGGACCCCCTCTTGTACTTGCTGTCCTGCAGCTCAAAACAAATAGGTATGCAGTGCAAATAAATGTTGCAGAGAAGAGGAAGAGAGAGGAGGTATGGAGGAGGGTACCAATATCTCGCTGTGAGACTCAACTGTCATTTGATGAAGGCCATAAAGTCATTAGCACAGAAGCTGGGTTCTTGAAAAACATGGAAAAGGAGCTCCCGTTTGCTGATATCAGACCTGGGAATTTCTTTTACACCTGCTTTGTCATCACTTGCTGAAAAAGAATATCAAGATCTGATCGACTGATTGATCACCCTGAGTCAGCTAAAGCTTGCGGTCAGGGAGGGGTAAGTGCAACGTGAGGCCTGCGTCACTCGCTCTTGACTTGTACCGCGATCCATTATTGGTGGCATGGAAATTCTTAATCCAATCACAATAATCAGCAGCCAGCCAAGCAAAACGAGGAAGGTGTTCTTGCCTACGCTGTGACCATAGCACAGCAGTACAGAACTACAGCGCGGTGCAATCCAACTCCTGTTTCACTCAACTAGTCAAGCTTCTCTTCCTGCTGGATGATCGATCGGCTCGTCAGAAGCCATGCAGGCAAGGTAATTAATTACATTACACACTCCCATTTAGGGCCCCTTTGAATAGTCGGATTGAGAAAGCGTAGGAATAGGAAAAACGTAGGATTTTGATAGGAATGTAAGTGTAAAACAGAGGATTGCAAAACACAGAAAAAACACAGGAATGAACGTTTGATT]
[+] EMBL AK119475 [ATTTCAGCGACCCCGCTTCGACGGCGGCGGCGGCGGCGCCGCCGGGCGGCGGACTACGTGGCGACGGCCGTCCAGTAGCTGGTCATGCAGGCGCTGGCCGGCGTGCTGATGATCCGCGCCCACTCCCACCCGCCGCCGCACCCGTCCGCTCCTCGCCGCAGCTCCGCCAGCTGCAACCACGAGTCCACGACCAAAAAAAAAAGCTCCGAAAATGGGCTGCTCAGTCAAGATGGTTTCTGACGCATTGGACCACATAAAAGAGAGATAAGGCACATCCTTCCTGTTTACTTGACATGGGGGCAGATTCCGTTGAGGCTAAAATATCCACATCAGGACTGGATCATTTCTATCTGCTTGATCATTGTCATCGATCTCTGCATCCTTCTCCTCCTGACTAGAAATTGAAGCACGGCCATGTCTCCTTTCCGGTTGCTCGATTGATCCTACCTTCGTGCAGGTATCGTTGATGCAGGACATCAAATTGAAAGGCATGCTTATTTCCACCCAGGATGTAAGGGGCACCATGAATGAACAGAAGCAGCAGACTCCAGGAGAACACATGCTACAAAACATAGGAACCACAACAGGAATCTGCAACTGCAAGATGGATCATCCATGGCCATCTTATAGGACTTATCCTCGATGTTGATGCGTGCCGGCGTCCAAGGAGAATGAAGTATGGGAAGGACCCCCTCTTGTACTTGCTGTCCTGCAGCTCAAAACAAATAGGTATGCAGTGCAAATAAATGTTGCAGAGAAGAGGAAGAGAGAGGAGGTATGGAGGAGGGTACCAATATCTCGCTGTGAGACTCAACTGTCATTTGATGAAGGCCATAAAGTCATTAGCACAGAAGCTGGGTTCTTGAAAAACATGGAAAAGGAGCTCCCGTTTGCTGATATCAGACCTGGGAATTTCTTTTACACCTGCTTTGTCATCACTTGCTGAAAAAGAATATCAAGATCTGATCGACTGATTGATCACCCTGAGTCAGCTAAAGCTTGCGGTCAGGGAGGGGTAAGTGCAACGTGAGGCCTGCGTCACTCGCTCTTGACTTGTACCGCGATCCATTATTGGTGGCATGGAAATTCTTAATCCAATCACAATAATCAGCAGCCAGCCAAGCAAAACGAGGAAGGTGTTCTTGCCTACGCTGTGACCATAGCACAGCAGTACAGAACTACAGCGCGGTGCAATCCAACTCCTGTTTCACTCAACTAGTCAAGCTTCTCTTCCTGCTGGATGATCGATCGGCTCGTCAGAAGCCATGCAGGCAAGGTAATTAATTACATTACACACTCCCATTTAGGGCCCCTTTGAATAGTCGGATTGAGAAAGCGTAGGAATAGGAAAAACGTAGGATTTTGATAGGAATGTAAGTGTAAAACAGAGGATTGCAAAACACAGAAAAAACACAGGAATGAACGTTTGATT]
consensusID : consensus_332#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence
[TTTTTTTTTTTTATTGGCTATTGATCTTTGCTTAACAATTTCAAATTTTGGGCACATGTAATATAAGGTACTGCAACAAAACAACAGAATTGGGTTGGGGAAAAGAAGGGAGGGGAAGGGATAAAACTACTGTTCTGTTACAGAACTTCAACAGTTGAAGAAAAACATACAACGGTAAAGATGACCAAGGAAGGGTATTGTAACAGTTATGATATGAGCATAGTTCTGTCATACAGATAGAGATGCAAGTTACCTGATAGAGGATTCCAGCCTCTGAGAGAGCAAGAATAGTTGTATTCACAATGAAAGTTGCTGTAGCATAGCCAACTGAAATTGGTAGTTCATGAGGAGCAATCACCCATGCCAGCCCATTCCAGAACCTCTCATAAATTGATCCACTTTGCCCTGTCACCCACACAGATAATTCTGACATGCGCGTCAAGGAAATCCTTTTTCTTATGGGCAGGACTGGATCATTTCTATCTGCTTGATCATTGTCATCGATCTCTGCATCCTTCTCCTCCTGACTAGAAGTTGAAGCACGGCCATGTCTCCTTTCCGGTTGCTCGATTGATCCTACCTTCGTGCAGGTATCGTTGATGCAGGACATCANATTGAAAGGCATGCTTATTTCCACCCAGGTATTACTCTGTTCCTGGTACTCCCAGAACTTGNTTGTCTTCTGCTTAAACT]
[+] EMBL CA760154 [TTTTTTTTTTTTATTGGCTATTGATCTTTGCTTAACAATTTCAAATTTTGGGCACATGTAATATAAGGTACTGCAACAAAACAACAGAATTGGGTTGGGGAAAAGAAGGGAGGGGAAGGGATAAAACTACTGTTCTGTTACAGAACTTCAACAGTTGAAGAAAAACATACAACGGTAAAGATGACCAAGGAAGGGTATTGTAACAGTTATGATATGAGCATAGTTCTGTCATACAGATAGAGATGCAAGTTACCTGATAGAGGATTCCAGCCTCTGAGAGAGCAAGAATAGTTGTATTCACAATGAAAGTTGCTGTAGCATAGCCAACTGAAATTGGTAGTTCATGAGGAGCAATCACCCATGCCAGCCCATTCCAGAACCTCTCATAAATTGATCCACTTTGCCCTGTCACCCACACAGATAATTCTGACATGCGCGTCAAGGAAATCCTTTTTCTTATGGGCAGGACTGGATCATTTCTATCTGCTTGATCATTGTCATCGATCTCTGCATCCTTCTCCTCCTGACTAGAAGTTGAAGCACGGCCATGTCTCCTTTCCGGTTGCTCGATTGATCCTACCTTCGTGCAGGTATCGTTGATGCAGGACATCANATTGAAAGGCATGCTTATTTCCACCCAGGTATTACTCTGTTCCTGGTACTCCCAGAACTTGNTTGTCTTCTGCTTAAACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_332#0 ATTTCAGCGACCCCGCTTCGACGGCGGCGGCGGCGGCGCCGCCGGGCGGCGGACTACGTG 60
consensus_332#1 ------------------------------------------------------------
consensus_332#0 GCGACGGCCGTCCAGTAGCTGGTCATGCAGGCGCTGGCCGGCGTGCTGATGATCCGCGCC 120
consensus_332#1 ------------------------------------------------------------
consensus_332#0 CACTCCCACCCGCCGCCGCACCCGTCCGCTCCTCGCCGCAGCTCCGCCAGCTGCAACCAC 180
consensus_332#1 ------------------------------------------------------------
consensus_332#0 GAGTCCACGACCAAAAAAAAAAGCTCCGAAAATGGGCTGCTCAGTCAAGATGGTTTCTGA 240
consensus_332#1 ------------------------------------------------------------
consensus_332#0 CGCATTGGACCACATAAAAGAGAGATAAGGCACATCCTTCCTGTTTACTTGACATGGGGG 300
consensus_332#1 ------------------------------------------------------------
consensus_332#0 CAGATTCCGTTGAGGCTAAAATATCCACATCAGGACTGGATCATTTCTATCTGCTTGATC 360
consensus_332#1 ------------------------------------------------------------
consensus_332#0 ATTGTCATCGATCTCTGCATCCTTCTCCTCCTGACTAGAAATTGAAGCACGGCCATGTCT 420
consensus_332#1 -------------------------------------------------------TTTTT 5
* * *
consensus_332#0 CCTTTCCGGTTGCTCGATTGATCCTACCTTCGTGCAGGTATCGTTGATGCAGGACATCAA 480
consensus_332#1 TTTTTTTATTGGCT--ATTGATCTTTGCTTAACA---ATTTCAAATTTTGGGCACATGTA 60
*** * *** ******* * *** * ** * * **** *
consensus_332#0 ATTGAAAGGCATGCTTATTTCCACCCAGGATGTAAGGGGCACCATGAATGAACAGAAGCA 540
consensus_332#1 ATATAAGGTACTGCAACAAAACAACAGAATTGGGTTGGGGAAAAGAAGGGAGGGGAAGGG 120
** ** * *** ** * ** *** * * * ** ****
consensus_332#0 GCAGACTCCAGGAGAACACATGCTACAAAACATAGGAACCACAACAGGAATCTGCAACTG 600
consensus_332#1 ATAAAACTACTGT-----TCTGTTACAGAACTTCAACAGTTGAAGAAAAACATACAACGG 175
* * * ** **** *** * * ** * ** * **** *
consensus_332#0 CAAGATGGATCATCCATGGCCATCTTATAGGACTTATCCTCGATGTTGATGCGTGCCGGC 660
consensus_332#1 TAAAGATGACCAAGGAAGGGTAT--TGTAACAGTTATGAT--ATGAGCATA-GTTCTGTC 230
** ** ** * ** ** * ** * **** * *** ** ** * * *
consensus_332#0 GTCCAAGGAGAATGAAGTATGGGAAGGACCCCCTCTTGTACTT--GCTGTCCTGCAGCTC 718
consensus_332#1 ATACAGATAGAG------ATGCAAGTTACCTGATAGAGGATTCCAGCCTCTGAGAGAGCA 284
* ** *** *** * *** * * * * ** *
consensus_332#0 AAAACAAATAGGTATGCAGTGCAAATAAATGTTGCAGAGAAGAGGAAGAGAGAGGAGGTA 778
consensus_332#1 AGAATAGTTGTATTCACAATGAAAGTTGCTGTAGCATAGCCAACTGAAATTGGTAGTTCA 344
* ** * * * ** ** ** * *** *** ** * * * * *
consensus_332#0 TGGAGGAGGGT-ACCAATATCTCGCTGTG--AGACTCAACTGTCATTTGATGAAGGCCAT 835
consensus_332#1 TGAGGAGCAATCACCCATGCCAGCCCATTCCAGAACCTCTCATAAATTGATCCACTTTGC 404
** * * *** ** * * * *** * * * ***** *
consensus_332#0 AAAGTCATTAGCACAGAAGCTGGGTTCTTGAAAAACATGGAAAAGGAGCTCCCGTTTGCT 895
consensus_332#1 CCTGTCACCCACACAGATAAT-----TCTGACATGCGCGTCAAGGAAA-TCCTTTTTCTT 458
**** ****** * *** * * * ** * * *** *** *
consensus_332#0 GATATCAGACCTGGGAATTTCTTTTACACCTGCTTTGTCATCACTTGCTGAAAAAGAATA 955
consensus_332#1 ATGGGCAGGACTGGA----TCATTTCTATCTGCTTGATCATTGTCA--TCGATCTCTGCA 512
*** **** ** *** * ****** **** * * *
consensus_332#0 TCAAGATCTGATCGACTGATTGATCACCCTGAGTCAGCTAAAGCTTGCGGTCAGGGAGGG 1015
consensus_332#1 TCCTTCTCCTCCTGACTAGAAGTTGAAGCACGGCCATGTCTCCTTTCCGGTT--GCTCGA 570
** ** **** * * * * * ** * ** **** * *
consensus_332#0 GTAAGTGCAACGTGAGGCCTGCGTCACTCGCTCTTGAC-TTGTACCGCGATCCATTATTG 1074
consensus_332#1 TTGATCCTACCTTCGTGCAGGTATCGTTGATGCAGGACATCANATTGAAAGGCATGCTTA 630
* * * * * ** * ** * * *** * * * * *** **
consensus_332#0 GTGGCATGGAAATTCTTAATCCAATCACAATAATCAGCAGCCAGCCAAGCAAAACGAGGA 1134
consensus_332#1 TTTCCACCCAGGTA-TTACTCTGTTCCTGGTACTCC-------------CAGAACTTGNT 676
* ** * * *** ** ** ** ** ** *** *
consensus_332#0 AGGTGTTCTTGCCTACGCTGTGACCATAGCACAGCAGTACAGAACTACAGCGCGGTGCAA 1194
consensus_332#1 TGTC--TTCTGCTTAAACT----------------------------------------- 693
* * *** ** **
consensus_332#0 TCCAACTCCTGTTTCACTCAACTAGTCAAGCTTCTCTTCCTGCTGGATGATCGATCGGCT 1254
consensus_332#1 ------------------------------------------------------------
consensus_332#0 CGTCAGAAGCCATGCAGGCAAGGTAATTAATTACATTACACACTCCCATTTAGGGCCCCT 1314
consensus_332#1 ------------------------------------------------------------
consensus_332#0 TTGAATAGTCGGATTGAGAAAGCGTAGGAATAGGAAAAACGTAGGATTTTGATAGGAATG 1374
consensus_332#1 ------------------------------------------------------------
consensus_332#0 TAAGTGTAAAACAGAGGATTGCAAAACACAGAAAAAACACAGGAATGAACGTTTGATT 1432
consensus_332#1 ----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||