|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3321#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1372 fasta sequence
[ACGAGCTCTCAATCTTCCACTTCCCTGTCAGACCAAATCCATCACCATGCGATCTGCAGTTGTCGCATTCGTTCTTCCGGCCACCGTGCTGGGTCAAAGCGCCTTGTGGGGCCAGTGTGGCGGTAATGGCTGGGGTGGTTCCAAGTCGTGCGTTTCTGGCACCACATGCACCTATGTGAACGATTGGTATTCTCAGTGCCAGCCTGGCACCGGTGGAGGAGACCCAGCACCTGCACCGACCAGCGCAGCTCCCGCACCTACCAGCGCAGCTCCAACCACCCTTACCACTACCACCACAGCTAGCGGCTCTGCGCCCACTGGTGGTAATTCAGCAGCTGGTGAGCTGAACGCCAAGTTCAAGGCCAAGGGCAAGCTCTACTTCGGCACTGAGATTGACCACTACCATCTCAGTAACAGTGCTTTGATGACTATCGCCAAGAACAGCTTTGGTCAGATCTCTCCTGAGAACAGCATGAAGTGGGATGCCGTCGAGCCATCGCGTGGAAGCTTCAGCTACGGTAACGCTGACAAGGTCGTCGACTGGGCTCTGCAGAACGGAAAGTACATGCGTGGCCACACCCTTCTATGGCACTCCCAGCTTCCTTCGTGGGTCAGCCAGATCAATGACCGCAACACATTGACAACTGTCATTCAAAACCACATCACCAACATCGTCACCCACTACAAGGGCAAGATCCTTCAGTGGGACGTTGTCAACGAAATCTTTGCCGAAGACGGCAGCCTCAGAGATAGTGTTTTCAGCCGTGTGCTCGGCGAGGACTTCGTCGGCATTGCCTTCCGCGCCGCTCGCGCCGCTGACCCTAACGCGAAGCTCTACATCAACGACTACAATCTCGACATTGCCAACTACGCCAAGGTGACCACCGGTATGGTTGCTCACGTCAACAAGTGGGTCGCCGCAGGCATCCCCATTGACGGCATTGGCTCGCAGGCCCATCTTGCTGCTCCCGGTGGCTGGAACCCGGCTTCGGGTGTGCCCAACGCTCTCAAGGCTCTGGCCGCTGCCAACGTCAAGGAGGTTGCCATTACCGAGCTCGATATCGCCGGCGCCTCGGCTAGCGACTACCTCACCGTCCAGAACGCCTGTCTCCAGGTTTCCAAGTGTGTTGGTATCACCGTCTGGGGTGTATCTGACAAGGACAGCTGGCGCGCTAGCGACAGCCCTCTGCTTTTCGATACCAACTACAGGCCCAAGCAGGCTTACAACAGTCTTGTCAGTGCGTTGTGAGTGATTCCTTTGGAGAAGTCAGTCGTTACATATGAAGATTGGGGGAGCTTCACAATTGTACATATTTTGAAAGAACGTTGATTCTTTCTATTTTAGCTTTTAGACAGTGACTCTTAAACGTAC]
[+] EMBL AK110530 [ACGAGCTCTCAATCTTCCACTTCCCTGTCAGACCAAATCCATCACCATGCGATCTGCAGTTGTCGCATTCGTTCTTCCGGCCACCGTGCTGGGTCAAAGCGCCTTGTGGGGCCAGTGTGGCGGTAATGGCTGGGGTGGTTCCAAGTCGTGCGTTTCTGGCACCACATGCACCTATGTGAACGATTGGTATTCTCAGTGCCAGCCTGGCACCGGTGGAGGAGACCCAGCACCTGCACCGACCAGCGCAGCTCCCGCACCTACCAGCGCAGCTCCAACCACCCTTACCACTACCACCACAGCTAGCGGCTCTGCGCCCACTGGTGGTAATTCAGCAGCTGGTGAGCTGAACGCCAAGTTCAAGGCCAAGGGCAAGCTCTACTTCGGCACTGAGATTGACCACTACCATCTCAGTAACAGTGCTTTGATGACTATCGCCAAGAACAGCTTTGGTCAGATCTCTCCTGAGAACAGCATGAAGTGGGATGCCGTCGAGCCATCGCGTGGAAGCTTCAGCTACGGTAACGCTGACAAGGTCGTCGACTGGGCTCTGCAGAACGGAAAGTACATGCGTGGCCACACCCTTCTATGGCACTCCCAGCTTCCTTCGTGGGTCAGCCAGATCAATGACCGCAACACATTGACAACTGTCATTCAAAACCACATCACCAACATCGTCACCCACTACAAGGGCAAGATCCTTCAGTGGGACGTTGTCAACGAAATCTTTGCCGAAGACGGCAGCCTCAGAGATAGTGTTTTCAGCCGTGTGCTCGGCGAGGACTTCGTCGGCATTGCCTTCCGCGCCGCTCGCGCCGCTGACCCTAACGCGAAGCTCTACATCAACGACTACAATCTCGACATTGCCAACTACGCCAAGGTGACCACCGGTATGGTTGCTCACGTCAACAAGTGGGTCGCCGCAGGCATCCCCATTGACGGCATTGGCTCGCAGGCCCATCTTGCTGCTCCCGGTGGCTGGAACCCGGCTTCGGGTGTGCCCAACGCTCTCAAGGCTCTGGCCGCTGCCAACGTCAAGGAGGTTGCCATTACCGAGCTCGATATCGCCGGCGCCTCGGCTAGCGACTACCTCACCGTCCAGAACGCCTGTCTCCAGGTTTCCAAGTGTGTTGGTATCACCGTCTGGGGTGTATCTGACAAGGACAGCTGGCGCGCTAGCGACAGCCCTCTGCTTTTCGATACCAACTACAGGCCCAAGCAGGCTTACAACAGTCTTGTCAGTGCGTTGTGAGTGATTCCTTTGGAGAAGTCAGTCGTTACATATGAAGATTGGGGGAGCTTCACAATTGTACATATTTTGAAAGAACGTTGATTCTTTCTATTTTAGCTTTTAGACAGTGACTCTTAAACGTAC]
consensusID : consensus_3321#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1285 fasta sequence
[GAGTAACTCGTATTGACCAACATGCGTACCTCTGCTCTCGCGCTCGTGGTTGCTCCCGCTGTTGTGCTGGGTCAAGGTAACCTGTACGACCAGTGCGGTGGTATCGGATGGGGTGGTGCGACTTCATGTTCATCCGGTGTATGCACCAAGGTCAATGATTACTACTCTCAGTGCCTTCCTGGCTCCGCTCCTCCGGCTACTACTCTGAGGACCACGACTACAGCTAGCACCCCTGCTCCTACCGGTGGCTCTGGTGGAGGCTCTGGTGGAGGCTCAGGAGCTGCGGGTGGTCTGCATGAGAAATTCAAGGCCAAGGGCAAGATCTATTTCGGCACTGAAATGGATCAATACCATTTGAACAACAACCCCTTGACCACAATTGTGAAGAACAGCTTCGGTCAGATTACACATGAGAACAGTCTGAAGTGGGATGCCACTGAGCCTCAACGTGGTACATTCACCTTCACCAATGCTGATGCGGTGGTCAACTTCGCCACACAGAATGGAAAGCTCCTCCGTGGCCACACTCTTCTCTGGCACTCGCAGCTACCGAGCTGGGTCACCCAAATCAATGACCGCAACACTCTCACGACCGTCATCCAGAACCACGTGACTGCGCTCGTCACCCGCTACAAGGGAAAGATCCTCCAGTGGGACGTGGTGAACGAGATCTTCGCCGAGGACGGCAATCTCAGAGACAGCGTCTTCAGCCGAGTGCTTGGAGAAGACTTCGTTGGCATTGCCTTCAAGGCTGCCCGTGCCGCTGATCCCGATGCTAAACTCTACATCAACGACTACAACCTCGACAGTGCCACCTACTCCAAGGTCACCAACGGCATGGTCGCCCACGTCAACAAGTGGATCTCACAGGGCATTCCCATCGACGGTATCGGCTCGCAAGCCCATCTCGCTGCACCTGGCGGATGGAACCCCGCGTCCGGCGTTCCCAACGCTCTCAAGGCACTGGCCGCTGCCAATGTCAAGGAGGTGGCCATCACGGAGCTTGACATCGCCGGCGCGTCAGCGAACGACTACCTCACTGTCATGAACGCCTGTCTCGCCGTGTCCAAGTGTGTGGGTATCACCGTCTGGGGTGTCTCTGACAAGGACAGCTGGCGCAAGAGCGACAACCCTCTCTTGTTTGACAGCAACTACCAGCCAAAGCAAGCATACAACACTTTGGTCGGTGCTTTGTAAGAAATTCCGAGTTTAACCAGTCATATTTTTAAGAAAATAGGTGGACATAGATGGGCTATTTCCAAGATACGCTTGAATAAACTTGAGT]
[+] EMBL AK108856 [GAGTAACTCGTATTGACCAACATGCGTACCTCTGCTCTCGCGCTCGTGGTTGCTCCCGCTGTTGTGCTGGGTCAAGGTAACCTGTACGACCAGTGCGGTGGTATCGGATGGGGTGGTGCGACTTCATGTTCATCCGGTGTATGCACCAAGGTCAATGATTACTACTCTCAGTGCCTTCCTGGCTCCGCTCCTCCGGCTACTACTCTGAGGACCACGACTACAGCTAGCACCCCTGCTCCTACCGGTGGCTCTGGTGGAGGCTCTGGTGGAGGCTCAGGAGCTGCGGGTGGTCTGCATGAGAAATTCAAGGCCAAGGGCAAGATCTATTTCGGCACTGAAATGGATCAATACCATTTGAACAACAACCCCTTGACCACAATTGTGAAGAACAGCTTCGGTCAGATTACACATGAGAACAGTCTGAAGTGGGATGCCACTGAGCCTCAACGTGGTACATTCACCTTCACCAATGCTGATGCGGTGGTCAACTTCGCCACACAGAATGGAAAGCTCCTCCGTGGCCACACTCTTCTCTGGCACTCGCAGCTACCGAGCTGGGTCACCCAAATCAATGACCGCAACACTCTCACGACCGTCATCCAGAACCACGTGACTGCGCTCGTCACCCGCTACAAGGGAAAGATCCTCCAGTGGGACGTGGTGAACGAGATCTTCGCCGAGGACGGCAATCTCAGAGACAGCGTCTTCAGCCGAGTGCTTGGAGAAGACTTCGTTGGCATTGCCTTCAAGGCTGCCCGTGCCGCTGATCCCGATGCTAAACTCTACATCAACGACTACAACCTCGACAGTGCCACCTACTCCAAGGTCACCAACGGCATGGTCGCCCACGTCAACAAGTGGATCTCACAGGGCATTCCCATCGACGGTATCGGCTCGCAAGCCCATCTCGCTGCACCTGGCGGATGGAACCCCGCGTCCGGCGTTCCCAACGCTCTCAAGGCACTGGCCGCTGCCAATGTCAAGGAGGTGGCCATCACGGAGCTTGACATCGCCGGCGCGTCAGCGAACGACTACCTCACTGTCATGAACGCCTGTCTCGCCGTGTCCAAGTGTGTGGGTATCACCGTCTGGGGTGTCTCTGACAAGGACAGCTGGCGCAAGAGCGACAACCCTCTCTTGTTTGACAGCAACTACCAGCCAAAGCAAGCATACAACACTTTGGTCGGTGCTTTGTAAGAAATTCCGAGTTTAACCAGTCATATTTTTAAGAAAATAGGTGGACATAGATGGGCTATTTCCAAGATACGCTTGAATAAACTTGAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3321#0 ACGAGCTCTCAATCTTCCACTTCCCTGTCAGACCAAATCCATCACCATGCGATCTGCAGT 60
consensus_3321#1 -------------------------GAGTAACTCGTATTGACCAACATGCGTACCTCTGC 35
* * ** * ** ****** * * *
consensus_3321#0 TGTCGCATTCGT---TCTTCCGGCCACCGTGCTGGGTCAAAGCGCCTTGTGGGGCCAGTG 117
consensus_3321#1 TCTCGCGCTCGTGGTTGCTCCCGCTGTTGTGCTGGGTCAAGGTAACCTGTACGACCAGTG 95
* **** **** * *** ** ************ * * *** * ******
consensus_3321#0 TGGCGGTAATGGCTGGGGTGGTTCCAAGTCGTGCGTTTCTGGCACCACATGCACCTATGT 177
consensus_3321#1 CGGTGGTATCGGATGGGGTGGTGCGACTTCATGTTCATCCGGTGT---ATGCACCAAGGT 152
** **** ** ********* * * ** ** ** ** ******* * **
consensus_3321#0 GAACGATTGGTATTCTCAGTGCCAGCCTGGCACCGGTGGAGGAGACCCAGCACCTGCACC 237
consensus_3321#1 CAATGATTACTACTCTCAGTGCCTTCCTGGCTCCGCTCC------TCCGGCTACTACTCT 206
** **** ** ********** ****** *** * ** ** ** * *
consensus_3321#0 GACCAGCGCAGCTCCCGCACCTACCAGCGCAGCTCCAACCACCCTTACCACTACCACCAC 297
consensus_3321#1 GAGGACCACGACT---ACAGCTAGCACCCCTGCTCC---------TACCGGTGGCTCT-- 252
** * * * ** ** *** ** * * ***** **** * * *
consensus_3321#0 AGCTAGCGGCTCTGCGCCCACTGGTGGTAATTCAGCAGCTGGTGAGCTGAACGCCAAGTT 357
consensus_3321#1 -GGTGGAGGCTCTGG------TGGAGGCTCAGGAGCTGCGGGTGGTCTGCATGAGAAATT 305
* * * ******* *** ** *** ** **** *** * * ** **
consensus_3321#0 CAAGGCCAAGGGCAAGCTCTACTTCGGCACTGAGATTGACCACTACCATCTCAGTAACAG 417
consensus_3321#1 CAAGGCCAAGGGCAAGATCTATTTCGGCACTGAAATGGATCAATACCATTTGAACAACAA 365
**************** **** *********** ** ** ** ****** * * ****
consensus_3321#0 TGCTTTGATGACTATCGCCAAGAACAGCTTTGGTCAGATCTCTCCTGAGAACAGCATGAA 477
consensus_3321#1 CCCCTTGACCACAATTGTGAAGAACAGCTTCGGTCAGATTACACATGAGAACAGTCTGAA 425
* **** ** ** * *********** ******** * * ********* ****
consensus_3321#0 GTGGGATGCCGTCGAGCCATCGCGTGGAAGCTTCAGCTACGGTAACGCTGACAAGGTCGT 537
consensus_3321#1 GTGGGATGCCACTGAGCCTCAACGTGGTACATTCACCTTCACCAATGCTGATGCGGTGGT 485
********** ***** ***** * **** ** * ** ***** *** **
consensus_3321#0 CGACTGGGCTCTGCAGAACGGAAAGTACATGCGTGGCCACACCCTTCTATGGCACTCCCA 597
consensus_3321#1 CAACTTCGCCACACAGAATGGAAAGCTCCTCCGTGGCCACACTCTTCTCTGGCACTCGCA 545
* *** ** ***** ****** * * *********** ***** ******** **
consensus_3321#0 GCTTCCTTCGTGGGTCAGCCAGATCAATGACCGCAACACATTGACAACTGTCATTCAAAA 657
consensus_3321#1 GCTACCGAGCTGGGTCACCCAAATCAATGACCGCAACACTCTCACGACCGTCATCCAGAA 605
*** ** ******* *** ***************** * ** ** ***** ** **
consensus_3321#0 CCACATCACCAACATCGTCACCCACTACAAGGGCAAGATCCTTCAGTGGGACGTTGTCAA 717
consensus_3321#1 CCACGTGACTGCGCTCGTCACCCGCTACAAGGGAAAGATCCTCCAGTGGGACGTGGTGAA 665
**** * ** ********* ********* ******** *********** ** **
consensus_3321#0 CGAAATCTTTGCCGAAGACGGCAGCCTCAGAGATAGTGTTTTCAGCCGTGTGCTCGGCGA 777
consensus_3321#1 CGAGATCTTCGCCGAGGACGGCAATCTCAGAGACAGCGTCTTCAGCCGAGTGCTTGGAGA 725
*** ***** ***** ******* ******** ** ** ******** ***** ** **
consensus_3321#0 GGACTTCGTCGGCATTGCCTTCCGCGCCGCTCGCGCCGCTGACCCTAACGCGAAGCTCTA 837
consensus_3321#1 AGACTTCGTTGGCATTGCCTTCAAGGCTGCCCGTGCCGCTGATCCCGATGCTAAACTCTA 785
******** ************ ** ** ** ******** ** * ** ** *****
consensus_3321#0 CATCAACGACTACAATCTCGACATTGCCAACTACGCCAAGGTGACCACCGGTATGGTTGC 897
consensus_3321#1 CATCAACGACTACAACCTCGACAGTGCCACCTACTCCAAGGTCACCAACGGCATGGTCGC 845
*************** ******* ***** **** ******* **** *** ***** **
consensus_3321#0 TCACGTCAACAAGTGGGTCGCCGCAGGCATCCCCATTGACGGCATTGGCTCGCAGGCCCA 957
consensus_3321#1 CCACGTCAACAAGTGGATCTCACAGGGCATTCCCATCGACGGTATCGGCTCGCAAGCCCA 905
*************** ** * ***** ***** ***** ** ******** *****
consensus_3321#0 TCTTGCTGCTCCCGGTGGCTGGAACCCGGCTTCGGGTGTGCCCAACGCTCTCAAGGCTCT 1017
consensus_3321#1 TCTCGCTGCACCTGGCGGATGGAACCCCGCGTCCGGCGTTCCCAACGCTCTCAAGGCACT 965
*** ***** ** ** ** ******** ** ** ** ** ***************** **
consensus_3321#0 GGCCGCTGCCAACGTCAAGGAGGTTGCCATTACCGAGCTCGATATCGCCGGCGCCTCGGC 1077
consensus_3321#1 GGCCGCTGCCAATGTCAAGGAGGTGGCCATCACGGAGCTTGACATCGCCGGCGCGTCAGC 1025
************ *********** ***** ** ***** ** *********** ** **
consensus_3321#0 TAGCGACTACCTCACCGTCCAGAACGCCTGTCTCCAGGTTTCCAAGTGTGTTGGTATCAC 1137
consensus_3321#1 GAACGACTACCTCACTGTCATGAACGCCTGTCTCGCCGTGTCCAAGTGTGTGGGTATCAC 1085
* ************ *** ************* ** *********** ********
consensus_3321#0 CGTCTGGGGTGTATCTGACAAGGACAGCTGGCGCGCTAGCGACAGCCCTCTGCTTTTCGA 1197
consensus_3321#1 CGTCTGGGGTGTCTCTGACAAGGACAGCTGGCGCAAGAGCGACAACCCTCTCTTGTTTGA 1145
************ ********************* ******* ****** * ** **
consensus_3321#0 TACCAACTACAGGCCCAAGCAGGCTTACAACAGTCTTGTCAGTGCGTTGTGAGTGATTCC 1257
consensus_3321#1 CAGCAACTACCAGCCAAAGCAAGCATACAACACTTTGGTCGGTGCTTTGTAAGAAATTCC 1205
* ******* *** ***** ** ******* * * *** **** **** ** *****
consensus_3321#0 TTTGGAGAAGTCAGTCGT-TACATATGAAGATTGGGGGAGCTTCACAATTGTACATATTT 1316
consensus_3321#1 G--AGTTTAACCAGTCATATTTTTAAGAAAATAGGTGGA----CATAGATGGGC-TATTT 1258
* * ***** * * ** *** ** ** *** ** * ** * *****
consensus_3321#0 TGAAAGAACGTTGATTCTTTCTATTTTAGCTTTTAGACAGTGACTCTTAAACGTAC 1372
consensus_3321#1 CCAAGATACGCT---TGAATAAACTTGAGT-------------------------- 1285
** *** * * * * ** **
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||