These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3324#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1900 fasta sequence [GGTTCCAAGGGCCAGCCTCCATCGCCGCCGCCGCCTCGCGTGCTTCCGTTTATCTCTGTTCCGCTCATGCTCTTGTTGGTTTTTCATGTTCATAAGTTCATGTGTGTTTTTTTTCTTTTTGGTTGAATCGTCCTCTCTTGTTCTTGTTAAGGTGGGGGCACCAATATATCACCATGGTGCCAGCCATCTCTGCGAGAAGGGGATAGATCGACGCGTCAAGAAATCGTTTCTGTTGCCATGGCTCCAGTAGGCAATACGATTGTTGCTTGCGCACAGTTCAATCTCTTGTGCAGATCAGTTTCTTCTTCTTTGTTTTTGGGTGATCTGTTGTTTATCTGTTCGAGTTGTGTTCTTGCACGGTGCTAACCCCGGGCTTGTCGGATTCAAATCGCCTGAAGAAGGAAGCCCCAATGCCTGTGCTAGATCCACCATACCATTCAGTGTTGCAGGTCTTGATGCTTCGAGCATGTGATTGATCTGTGTCAGCGTAATGGATACATTTCAAAAATCAAATGTTTTTTTTTGTGTTTCCTAATTCTCTTTTTCCTTGGGAGATTTGATAGCTGATGGCAGTGATTTGACATTTACCCGCGCTTCTGATTTAAACCGTGAAGTTAAGGGAAAAAAATAATGGTTGAATTTCTTAATATGAGCCTTCCATTCTGCTATCGTATTTCCTCTAAAAATTTGGTATTTCTGTTTGTTAGATTTACGTTTAGATTTGGTAGATTTGTCTCTTCGGCAGTGATGATACAAACTTTCAGCTTTAAACGCCAGCTCTGCTTCTGATAATTCATGACAGATAAAGCTGATTCAGATCTGAGCCAATTGCTGTTCTACTTTTTTTCCCATAGGAATAACCCTTTGCGTTAGCATCATTTGTATCTCTTCTATTAGCATATTATATCATTTGTTTGAACTAATAGCATCATCTAATAATTTTACCTATGATGAGCTGCCCATTGTTTAGAGGATGTAGTTGGCTCGAGTTCCTGTTTATCAGGAAGAACCTACTTGTAGCTGCTGCATTCACATGTTATCAACGGGCTACCTGAGGTCATTAGATTAGATGACCTTCATGTTGTACCTTTGTATTTTCAGGGATTTTTCTTCGTCCATTGAGTAATTTGCATAATTTTTTGCCGAGTTTAACTATCCTTCCGCATGTTAAGTTTCTGATTTGCCGGGAGGCTGAAAAAGCTCGGAGATTGTGTGTTGACATCAGCTTCGTCTCTATTAACCGTGGGATGGGAGTTAAATGACAGCACGAAATTCGTTCCATTCTTCTAGCATATACTCACCGTCCATTTTGATTTTGAGATTTTGTTGATGATAGGTGATTCAGCTCTTTGTAGTTGTCGTGTATAACTGACGCAACGAAATTCATGGAAATGCATTGAATATTCAATCACTGATTCGAGGCTAACGTTTTAATAATCCCAGTAATTACTGAGGCAAACGGTTTTAATAATTCCAATTACTGGCAACTCAATGTTGAATGTCTAATTCTTTGAACAGCTGAACACCATGTTGCCAGTTGCACTCCCAGCTAGTTGGAAACTTGCATTGCCACAGCTATTCAGGACTGTTTTCAGATGTTACAATTGTTCATATGAACGAATTAAGGACCGGTTCTTTTGATTGACAGTGATGTTTTATTTCTGCATCACAAAGGAACTTCAGCCTCAGAGACTCTGCTGATGATCAGAATTCAGAGAGGAACTCAAGCATCATCAGAAAGTTTTGCTGTATCGGACTGCTGGAGAACGGAACGGAGGAGACATGGAAGGAGAGATCACAACAACAAATGATAATCGTTGACATGTCTTGAAACTTCGCATTGAGTTGTTTTGATCTGAGAAATGACCCATGAAAAGAAAAGGAAAACAGCTAACAAGGA] [+] EMBL AK107197 [GGTTCCAAGGGCCAGCCTCCATCGCCGCCGCCGCCTCGCGTGCTTCCGTTTATCTCTGTTCCGCTCATGCTCTTGTTGGTTTTTCATGTTCATAAGTTCATGTGTGTTTTTTTTCTTTTTGGTTGAATCGTCCTCTCTTGTTCTTGTTAAGGTGGGGGCACCAATATATCACCATGGTGCCAGCCATCTCTGCGAGAAGGGGATAGATCGACGCGTCAAGAAATCGTTTCTGTTGCCATGGCTCCAGTAGGCAATACGATTGTTGCTTGCGCACAGTTCAATCTCTTGTGCAGATCAGTTTCTTCTTCTTTGTTTTTGGGTGATCTGTTGTTTATCTGTTCGAGTTGTGTTCTTGCACGGTGCTAACCCCGGGCTTGTCGGATTCAAATCGCCTGAAGAAGGAAGCCCCAATGCCTGTGCTAGATCCACCATACCATTCAGTGTTGCAGGTCTTGATGCTTCGAGCATGTGATTGATCTGTGTCAGCGTAATGGATACATTTCAAAAATCAAATGTTTTTTTTTGTGTTTCCTAATTCTCTTTTTCCTTGGGAGATTTGATAGCTGATGGCAGTGATTTGACATTTACCCGCGCTTCTGATTTAAACCGTGAAGTTAAGGGAAAAAAATAATGGTTGAATTTCTTAATATGAGCCTTCCATTCTGCTATCGTATTTCCTCTAAAAATTTGGTATTTCTGTTTGTTAGATTTACGTTTAGATTTGGTAGATTTGTCTCTTCGGCAGTGATGATACAAACTTTCAGCTTTAAACGCCAGCTCTGCTTCTGATAATTCATGACAGATAAAGCTGATTCAGATCTGAGCCAATTGCTGTTCTACTTTTTTTCCCATAGGAATAACCCTTTGCGTTAGCATCATTTGTATCTCTTCTATTAGCATATTATATCATTTGTTTGAACTAATAGCATCATCTAATAATTTTACCTATGATGAGCTGCCCATTGTTTAGAGGATGTAGTTGGCTCGAGTTCCTGTTTATCAGGAAGAACCTACTTGTAGCTGCTGCATTCACATGTTATCAACGGGCTACCTGAGGTCATTAGATTAGATGACCTTCATGTTGTACCTTTGTATTTTCAGGGATTTTTCTTCGTCCATTGAGTAATTTGCATAATTTTTTGCCGAGTTTAACTATCCTTCCGCATGTTAAGTTTCTGATTTGCCGGGAGGCTGAAAAAGCTCGGAGATTGTGTGTTGACATCAGCTTCGTCTCTATTAACCGTGGGATGGGAGTTAAATGACAGCACGAAATTCGTTCCATTCTTCTAGCATATACTCACCGTCCATTTTGATTTTGAGATTTTGTTGATGATAGGTGATTCAGCTCTTTGTAGTTGTCGTGTATAACTGACGCAACGAAATTCATGGAAATGCATTGAATATTCAATCACTGATTCGAGGCTAACGTTTTAATAATCCCAGTAATTACTGAGGCAAACGGTTTTAATAATTCCAATTACTGGCAACTCAATGTTGAATGTCTAATTCTTTGAACAGCTGAACACCATGTTGCCAGTTGCACTCCCAGCTAGTTGGAAACTTGCATTGCCACAGCTATTCAGGACTGTTTTCAGATGTTACAATTGTTCATATGAACGAATTAAGGACCGGTTCTTTTGATTGACAGTGATGTTTTATTTCTGCATCACAAAGGAACTTCAGCCTCAGAGACTCTGCTGATGATCAGAATTCAGAGAGGAACTCAAGCATCATCAGAAAGTTTTGCTGTATCGGACTGCTGGAGAACGGAACGGAGGAGACATGGAAGGAGAGATCACAACAACAAATGATAATCGTTGACATGTCTTGAAACTTCGCATTGAGTTGTTTTGATCTGAGAAATGACCCATGAAAAGAAAAGGAAAACAGCTAACAAGGA] consensusID : consensus_3324#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence [ACCTGCGGGGCGCCGCGGTTTATCTTTTCTTTCTGGTCTGTGTTTTCATGTTGCCTTCTACATGTTCAATTTGATTTTTTTTTTCATGGATCGATGGTATATGGTTTTTTTCCTGTGTGTTTTGAATCGTCCTCTCTTGCTCCTGTTAAGGTTGGGGAACCAATATCTCTGTGGTGTCACCATCTTTGCAAGAAGGGGATAGATCGACGCGTCAAGAAATCATTTCTGTTGCCATGGCTCCAGTAGGCAATACGATTGTTGCTTGCGTACAATTTTTTCTTGATGCAGACTAGTTTCTTTTCTTGTACCCTGTTTTAGAAAAATCTCACTCTTCTCTGTTTAAAAAAA] [+] EMBL AU172734 [ACCTGCGGGGCGCCGCGGTTTATCTTTTCTTTCTGGTCTGTGTTTTCATGTTGCCTTCTACATGTTCAATTTGATTTTTTTTTTCATGGATCGATGGTATATGGTTTTTTTCCTGTGTGTTTTGAATCGTCCTCTCTTGCTCCTGTTAAGGTTGGGGAACCAATATCTCTGTGGTGTCACCATCTTTGCAAGAAGGGGATAGATCGACGCGTCAAGAAATCATTTCTGTTGCCATGGCTCCAGTAGGCAATACGATTGTTGCTTGCGTACAATTTTTTCTTGATGCAGACTAGTTTCTTTTCTTGTACCCTGTTTTAGAAAAATCTCACTCTTCTCTGTTTAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3324#0 GGTTCCAAGGGCCAGCCTCCATCGCCGCCGCCGCCTCGCGTGCTTCCGTTTATCTCTGTT 60 consensus_3324#1 --ACCTGCGGGGCGCCGCGGTTTATCTTTTCTTTCTGGTCTGTGTT--TTCATGT-TGCC 55 * *** * * * * * ** * ** * ** ** * ** consensus_3324#0 CCGCTCATGCTCTTGTTGGTTTTTCATGTTCATAAGTTCATG---TGTGTTTTTTTTCTT 117 consensus_3324#1 TTCTACATGTTCAATTTGATTTTTT-TTTTCATGGATCGATGGTATATGGTTTTTTTCCT 114 **** ** *** ***** * ***** * *** * ** ******** * consensus_3324#0 TTTGGTT--GAATCGTCCTCTCTTGTTCTTGTTAAGGTGGGGGCACCAATATATCACCAT 175 consensus_3324#1 GTGTGTTTTGAATCGTCCTCTCTTGCTCCTGTTAAGGTTGGGGAACCAATATCT--CTGT 172 * *** **************** ** ********* **** ******** * * * consensus_3324#0 GGTGCCAGCCATCTCTGCGAGAAGGGGATAGATCGACGCGTCAAGAAATCGTTTCTGTTG 235 consensus_3324#1 GGTGTCA-CCATCTTTGCAAGAAGGGGATAGATCGACGCGTCAAGAAATCATTTCTGTTG 231 **** ** ****** *** ******************************* ********* consensus_3324#0 CCATGGCTCCAGTAGGCAATACGATTGTTGCTTGCGCACAGTTCAATCTCTTGTGCAGAT 295 consensus_3324#1 CCATGGCTCCAGTAGGCAATACGATTGTTGCTTGCGTACAATTTTTTCT-TGATGCAGAC 290 ************************************ *** ** *** * ****** consensus_3324#0 CAGTTTCTTCTTCT-----TTGTTTTTGGGTGATCTGTTGTTTATCTGTTCGAGTTGTGT 350 consensus_3324#1 TAGTTTCTTTTCTTGTACCCTGTTTTAGAAAAATCTCACTCTTCTCTGTTTAAAAAAA-- 348 ******** * * ****** * **** ** ****** * consensus_3324#0 TCTTGCACGGTGCTAACCCCGGGCTTGTCGGATTCAAATCGCCTGAAGAAGGAAGCCCCA 410 consensus_3324#1 ------------------------------------------------------------ consensus_3324#0 ATGCCTGTGCTAGATCCACCATACCATTCAGTGTTGCAGGTCTTGATGCTTCGAGCATGT 470 consensus_3324#1 ------------------------------------------------------------ consensus_3324#0 GATTGATCTGTGTCAGCGTAATGGATACATTTCAAAAATCAAATGTTTTTTTTTGTGTTT 530 consensus_3324#1 ------------------------------------------------------------ consensus_3324#0 CCTAATTCTCTTTTTCCTTGGGAGATTTGATAGCTGATGGCAGTGATTTGACATTTACCC 590 consensus_3324#1 ------------------------------------------------------------ consensus_3324#0 GCGCTTCTGATTTAAACCGTGAAGTTAAGGGAAAAAAATAATGGTTGAATTTCTTAATAT 650 consensus_3324#1 ------------------------------------------------------------ consensus_3324#0 GAGCCTTCCATTCTGCTATCGTATTTCCTCTAAAAATTTGGTATTTCTGTTTGTTAGATT 710 consensus_3324#1 ------------------------------------------------------------ consensus_3324#0 TACGTTTAGATTTGGTAGATTTGTCTCTTCGGCAGTGATGATACAAACTTTCAGCTTTAA 770 consensus_3324#1 ------------------------------------------------------------ consensus_3324#0 ACGCCAGCTCTGCTTCTGATAATTCATGACAGATAAAGCTGATTCAGATCTGAGCCAATT 830 consensus_3324#1 ------------------------------------------------------------ consensus_3324#0 GCTGTTCTACTTTTTTTCCCATAGGAATAACCCTTTGCGTTAGCATCATTTGTATCTCTT 890 consensus_3324#1 ------------------------------------------------------------ consensus_3324#0 CTATTAGCATATTATATCATTTGTTTGAACTAATAGCATCATCTAATAATTTTACCTATG 950 consensus_3324#1 ------------------------------------------------------------ consensus_3324#0 ATGAGCTGCCCATTGTTTAGAGGATGTAGTTGGCTCGAGTTCCTGTTTATCAGGAAGAAC 1010 consensus_3324#1 ------------------------------------------------------------ consensus_3324#0 CTACTTGTAGCTGCTGCATTCACATGTTATCAACGGGCTACCTGAGGTCATTAGATTAGA 1070 consensus_3324#1 ------------------------------------------------------------ consensus_3324#0 TGACCTTCATGTTGTACCTTTGTATTTTCAGGGATTTTTCTTCGTCCATTGAGTAATTTG 1130 consensus_3324#1 ------------------------------------------------------------ consensus_3324#0 CATAATTTTTTGCCGAGTTTAACTATCCTTCCGCATGTTAAGTTTCTGATTTGCCGGGAG 1190 consensus_3324#1 ------------------------------------------------------------ consensus_3324#0 GCTGAAAAAGCTCGGAGATTGTGTGTTGACATCAGCTTCGTCTCTATTAACCGTGGGATG 1250 consensus_3324#1 ------------------------------------------------------------ consensus_3324#0 GGAGTTAAATGACAGCACGAAATTCGTTCCATTCTTCTAGCATATACTCACCGTCCATTT 1310 consensus_3324#1 ------------------------------------------------------------ consensus_3324#0 TGATTTTGAGATTTTGTTGATGATAGGTGATTCAGCTCTTTGTAGTTGTCGTGTATAACT 1370 consensus_3324#1 ------------------------------------------------------------ consensus_3324#0 GACGCAACGAAATTCATGGAAATGCATTGAATATTCAATCACTGATTCGAGGCTAACGTT 1430 consensus_3324#1 ------------------------------------------------------------ consensus_3324#0 TTAATAATCCCAGTAATTACTGAGGCAAACGGTTTTAATAATTCCAATTACTGGCAACTC 1490 consensus_3324#1 ------------------------------------------------------------ consensus_3324#0 AATGTTGAATGTCTAATTCTTTGAACAGCTGAACACCATGTTGCCAGTTGCACTCCCAGC 1550 consensus_3324#1 ------------------------------------------------------------ consensus_3324#0 TAGTTGGAAACTTGCATTGCCACAGCTATTCAGGACTGTTTTCAGATGTTACAATTGTTC 1610 consensus_3324#1 ------------------------------------------------------------ consensus_3324#0 ATATGAACGAATTAAGGACCGGTTCTTTTGATTGACAGTGATGTTTTATTTCTGCATCAC 1670 consensus_3324#1 ------------------------------------------------------------ consensus_3324#0 AAAGGAACTTCAGCCTCAGAGACTCTGCTGATGATCAGAATTCAGAGAGGAACTCAAGCA 1730 consensus_3324#1 ------------------------------------------------------------ consensus_3324#0 TCATCAGAAAGTTTTGCTGTATCGGACTGCTGGAGAACGGAACGGAGGAGACATGGAAGG 1790 consensus_3324#1 ------------------------------------------------------------ consensus_3324#0 AGAGATCACAACAACAAATGATAATCGTTGACATGTCTTGAAACTTCGCATTGAGTTGTT 1850 consensus_3324#1 ------------------------------------------------------------ consensus_3324#0 TTGATCTGAGAAATGACCCATGAAAAGAAAAGGAAAACAGCTAACAAGGA 1900 consensus_3324#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||