These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3326#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 278 fasta sequence [AGGTGTCCCCCGTCTTCAGTCTCTTGAGTGACTGACGGACACTACTCTACTCCCTCCGCTCGCCGGAGCTAATGGCGACGCGGCGAGCTTCCACCACCCCGCCTCCNCGCAGCCGGCGATACCCGGCGCGGCGGCGGCGGCGGTGGCCGTTGCGCCGCATGGCCGTTTCTACGTGGGGTCTCTACGCCCACGGCCTCCTCCGCTCNGCCCGACCTCCTCACGTTTCTCACGCGTTCTCTGGCGCTTCTCTCTCGGCTCCTCTGCAACGCTCNTCTCGG] [+] EMBL OSS13962A [AGGTGTCCCCCGTCTTCAGTCTCTTGAGTGACTGACGGACACTACTCTACTCCCTCCGCTCGCCGGAGCTAATGGCGACGCGGCGAGCTTCCACCACCCCGCCTCCNCGCAGCCGGCGATACCCGGCGCGGCGGCGGCGGCGGTGGCCGTTGCGCCGCATGGCCGTTTCTACGTGGGGTCTCTACGCCCACGGCCTCCTCCGCTCNGCCCGACCTCCTCACGTTTCTCACGCGTTCTCTGGCGCTTCTCTCTCGGCTCCTCTGCAACGCTCNTCTCGG] consensusID : consensus_3326#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 189 fasta sequence [AGGTGTCCCCCGTCTTCAGTCTCTTGAGTGACTGACGGACACTACTCTACTCCCTCCGCTCGCCGGAGCTAATNGCGACGCCGGCGAGCTTCCACCACNCCGCCTCCCCGCAGCCGGCGATACCCGGCGCGGCGGCGGCGGCGGTNGCCGCGTGCGCCGCCATNGCCGTCTCCTACGTCGCGGTGCTCT] [+] EMBL AU089763 [AGGTGTCCCCCGTCTTCAGTCTCTTGAGTGACTGACGGACACTACTCTACTCCCTCCGCTCGCCGGAGCTAATNGCGACGCCGGCGAGCTTCCACCACNCCGCCTCCCCGCAGCCGGCGATACCCGGCGCGGCGGCGGCGGCGGTNGCCGCGTGCGCCGCCATNGCCGTCTCCTACGTCGCGGTGCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3326#0 AGGTGTCCCCCGTCTTCAGTCTCTTGAGTGACTGACGGACACTACTCTACTCCCTCCGCT 60 consensus_3326#1 AGGTGTCCCCCGTCTTCAGTCTCTTGAGTGACTGACGGACACTACTCTACTCCCTCCGCT 60 ************************************************************ consensus_3326#0 CGCCGGAGCTAATGGCGACGC-GGCGAGCTTCCACCACCCCGCCTCCNCGCAGCCGGCGA 119 consensus_3326#1 CGCCGGAGCTAATNGCGACGCCGGCGAGCTTCCACCACNCCGCCTCCCCGCAGCCGGCGA 120 ************* ******* **************** ******** ************ consensus_3326#0 TACCCGGCGCGGCGGCGGCGGCGGTGGCCGT-TGCGCCGC-ATGGCCGTTTC-TACGTGG 176 consensus_3326#1 TACCCGGCGCGGCGGCGGCGGCGGTNGCCGCGTGCGCCGCCATNGCCGTCTCCTACGTCG 180 ************************* **** ******** ** ***** ** ***** * consensus_3326#0 GGTCTCTACGCCCACGGCCTCCTCCGCTCNGCCCGACCTCCTCACGTTTCTCACGCGTTC 236 consensus_3326#1 CGGTGCTCT--------------------------------------------------- 189 * ** consensus_3326#0 TCTGGCGCTTCTCTCTCGGCTCCTCTGCAACGCTCNTCTCGG 278 consensus_3326#1 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||