These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_334#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [TTTTTTTTTTTTTTTTTGGCTCCTCCAGGAGCAGTCTCACCAGGTATGTATGTACATAAGCCATTACACCTTAACATGTTCATCTTACAATGGTATTGTCAGTATGCTGAACAATGAACGCTTCCAGTTTTTTTTTAGATAATGGATTAATTAAAACCCGGCCTCTACATCCAACAAGGATGTATAACACTTCCAATGTTAACTTTTCCAGGCTTTGCGGGTCTCAGCCTCTCCTTTGCTTTGTCGCTGACAGCAGTTCAGGTTTTCCTGACAAAGTTCTACTCCTACATGGAAAACTATATTATTTCAGTTGAGAGAATAAAGCAGTATATGCACCTTCCACCAAAGCCTCCAGCCATTATACCAGAGAATAGGGCTCCAAGTTCATGGCCACAGGAGGGACAAATTGACACACTTATACTTATGAGCAGGTCAGATACCGCCCAAACATGCCTCTTGTCCTCAAAGGAATCACTTGCACATTTCCTGCTGGAAACAAAATTGGGGTTGTAGGGAGAACGGGAAGTGGGAAATCGACACCCATCAGCTCATTGTTCCGCCTCGTTGATCACTTTTCAGAGGAACTGTGCGCAACAACTTGGATCCTCTTGGTCGGTGTCGTGAGGGGGGATCATCTGTCCGCCGGCGACGGCAATCGAATGTCGCCGCCGTCNACCAAACCCCCGGGGGCG] [+] EMBL CA760385 [TTTTTTTTTTTTTTTTTGGCTCCTCCAGGAGCAGTCTCACCAGGTATGTATGTACATAAGCCATTACACCTTAACATGTTCATCTTACAATGGTATTGTCAGTATGCTGAACAATGAACGCTTCCAGTTTTTTTTTAGATAATGGATTAATTAAAACCCGGCCTCTACATCCAACAAGGATGTATAACACTTCCAATGTTAACTTTTCCAGGCTTTGCGGGTCTCAGCCTCTCCTTTGCTTTGTCGCTGACAGCAGTTCAGGTTTTCCTGACAAAGTTCTACTCCTACATGGAAAACTATATTATTTCAGTTGAGAGAATAAAGCAGTATATGCACCTTCCACCAAAGCCTCCAGCCATTATACCAGAGAATAGGGCTCCAAGTTCATGGCCACAGGAGGGACAAATTGACACACTTATACTTATGAGCAGGTCAGATACCGCCCAAACATGCCTCTTGTCCTCAAAGGAATCACTTGCACATTTCCTGCTGGAAACAAAATTGGGGTTGTAGGGAGAACGGGAAGTGGGAAATCGACACCCATCAGCTCATTGTTCCGCCTCGTTGATCACTTTTCAGAGGAACTGTGCGCAACAACTTGGATCCTCTTGGTCGGTGTCGTGAGGGGGGATCATCTGTCCGCCGGCGACGGCAATCGAATGTCGCCGCCGTCNACCAAACCCCCGGGGGCG] consensusID : consensus_334#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence [TTTTTTTTTTTGGATGGACATAAGCCATTACACCTTAACATGTTCATCTTACAATGGTATTTTCAGTATGCTGAACAATGAACGCTTCCAGTTTTTTTTTTTAGATAATGGATTAATTNNAAAACCCGGCCTCTACATCCAACAAGGATGTATAACACTTCCAATGGTAACTTTTCCAGGCTTTGCGGTCTCAAGCTCTCCTTTGCTTTGCCGCTTACAGCAGTTCAAGTTTTTCCTGACAAAGTTCTTACTCCTACTTGGAAAGACCTTAATTTTATTTTTCCGGTGGAGAAAAATAAAGGCGGTTTTTTGGCGCCTTTTCTCCCAAAAGCCCCCGCCCCTTTTTACCCAAAAAAAGGGCCTCCCAGTTTTTTGGGCCCCGGGGGGGGGAAAATTTTGAACCCCCTTTTACTCTTTTTGGAGCGCGGGGGGAAAAAAAACCCCCCCCCAAAAAAAAGGGGTCTTTTGTGGTTCCCCAAAGAAGGGAAAATATTTGTGGAAATTTTTTTCCGGGGGGGGGAAAACAAAAAAAAAAGGGGGTGGGTTTGGGGGGGGAAAAAAACCCCGCGAGAAGTGGGG] [+] EMBL CA760696 [TTTTTTTTTTTGGATGGACATAAGCCATTACACCTTAACATGTTCATCTTACAATGGTATTTTCAGTATGCTGAACAATGAACGCTTCCAGTTTTTTTTTTTAGATAATGGATTAATTNNAAAACCCGGCCTCTACATCCAACAAGGATGTATAACACTTCCAATGGTAACTTTTCCAGGCTTTGCGGTCTCAAGCTCTCCTTTGCTTTGCCGCTTACAGCAGTTCAAGTTTTTCCTGACAAAGTTCTTACTCCTACTTGGAAAGACCTTAATTTTATTTTTCCGGTGGAGAAAAATAAAGGCGGTTTTTTGGCGCCTTTTCTCCCAAAAGCCCCCGCCCCTTTTTACCCAAAAAAAGGGCCTCCCAGTTTTTTGGGCCCCGGGGGGGGGAAAATTTTGAACCCCCTTTTACTCTTTTTGGAGCGCGGGGGGAAAAAAAACCCCCCCCCAAAAAAAAGGGGTCTTTTGTGGTTCCCCAAAGAAGGGAAAATATTTGTGGAAATTTTTTTCCGGGGGGGGGAAAACAAAAAAAAAAGGGGGTGGGTTTGGGGGGGGAAAAAAACCCCGCGAGAAGTGGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_334#0 TTTTTTTTTTTTTTTTTGGCTCCTCCAGGAGCAGTCTCACCAGGTATGTATGTACATAAG 60 consensus_334#1 ------------------------------------TTTTTTTTTTTGGATGGACATAAG 24 * * ** *** ******* consensus_334#0 CCATTACACCTTAACATGTTCATCTTACAATGGTATTGTCAGTATGCTGAACAATGAACG 120 consensus_334#1 CCATTACACCTTAACATGTTCATCTTACAATGGTATTTTCAGTATGCTGAACAATGAACG 84 ************************************* ********************** consensus_334#0 CTTCCAGTTTTTTTTT--AGATAATGGATTAATTAAAA--CCCGGCCTCTACATCCAACA 176 consensus_334#1 CTTCCAGTTTTTTTTTTTAGATAATGGATTAATTNNAAAACCCGGCCTCTACATCCAACA 144 **************** **************** ** ******************** consensus_334#0 AGGATGTATAACACTTCCAATGTTAACTTTTCCAGGCTTTGCGGGTCTCAGCCTCTCCTT 236 consensus_334#1 AGGATGTATAACACTTCCAATGGTAACTTTTCCAGGCTTTGCGG-TCTCAAGCTCTCCTT 203 ********************** ********************* ***** ******** consensus_334#0 TGCTTTGTCGCTGACAGCAGTTCAGGTTTT-CCTGACAAAGTTCT-ACTCCTACATGGAA 294 consensus_334#1 TGCTTTGCCGCTTACAGCAGTTCAAGTTTTTCCTGACAAAGTTCTTACTCCTACTTGGAA 263 ******* **** *********** ***** ************** ******** ***** consensus_334#0 A-------ACTATATTATTTCAGTTGAGAGAAT--AAAGCAGTATAT----GCACCTTCC 341 consensus_334#1 AGACCTTAATTTTATTTTTCCGGTGGAGAAAAATAAAGGCGGTTTTTTGGCGCCTTTTCT 323 * * * **** ** * ** **** ** ** ** ** * * ** *** consensus_334#0 ACCAAAGCCTCCAGCCA--TTATACCAGAGAATAGGGC-TCCAAGTTCAT--GGCCACAG 396 consensus_334#1 CCCAAAAGCCCCCGCCCCTTTTTACCCAAAAAAAGGGCCTCCCAGTTTTTTGGGCCCCGG 383 ***** * ** *** ** **** * ** ***** *** **** * **** * * consensus_334#0 GAGGGACAAA---TTGACACACTTATACTTATGAGCAGGTCAGATACCGCCCAAACATGC 453 consensus_334#1 GGGGGGGAAAATTTTGAACCCCCTTTTACTCTTTTTGGAGCGCGGGGGGAAAAAAAACCC 443 * *** *** **** * * * * * * * * * *** * * consensus_334#0 CTCTTGTCCTCAAAGGAATCACTTGCACATTTCCTGCTGGAAACAAAATTGGGGTTGTAG 513 consensus_334#1 CCCCCCAAAAAAAAGGGGTCTTTTGTG-GTTCCCCAAAGAAGGGAAAATATTTGTGGAAA 502 * * ***** ** *** ** ** * * ***** ** * * consensus_334#0 GGAGAACGGGAAGTGGGAAATCGACACCCATCAGCTCATTGTTCCGCCTCGTTGATCACT 573 consensus_334#1 TTTTTTTCCGGGGGGGGGAAAACAAAAAAAAAAGGGGGTGGGTTTGGGGGGGGAAAAAAA 562 * * *** ** * * * ** * * * * * * * consensus_334#0 TTTCAGAGGAACTGTGCGCAACAACTTGGATCCTCTTGGTCGGTGTCGTGAGGGGGGATC 633 consensus_334#1 CCCCGCGAGAAGTGGGG------------------------------------------- 579 * *** ** * consensus_334#0 ATCTGTCCGCCGGCGACGGCAATCGAATGTCGCCGCCGTCNACCAAACCCCCGGGGGCG 692 consensus_334#1 ----------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||