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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3340#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 769 fasta sequence
[CCTTGCGTTGAGCTTAGCTTTAGCTGATCGAATCGAGAAGAGACGTAAATTAAGCAAGCGATCGATCGAACTGATCTCGTCGGCCGATCGATTGATCGGATTTGGTTCCATGGAGAGGGGTTGCAACGGCAATGGCGGCGGCGGCGGCGGCGTGAAGGTGACCTTCATCGAGACGCAGTTCGTCACCTCCGACGCCGCGGGCTTCAAGTCGCTCGTGCAGCGCCTCACCGGCAACGACGCAGCCGTGCCGGCGGCGCCGCCACAGAGGCCGCGGCCGTGCCGTGCAGACGGGTGGAGGGGAGCCGGCGGCGCGAGCGCGACGGTGGTGAAGCGGGAAGCCGTGCCGCCGCCGGTGGCGCCGTGGGTGGATGAGATGATGATGCTGTACGAGACGTGCGACCTCGCCGAGATGTTGCGCGTCGACGTCGTCGGCGCGAGCGGCGGAGGACGGTGCCACGGCGGCGGCGGATACGGTGGTTTTCCATGCTGATCGACGGCCGGCGATGAGCTCAGTCCATCTTCAGTTTTGGATGCTCTCTGCATGTTGTTCCATTCTTTTTTAACTGAGATTATCTGTATATTGCTCCATGCCTTGTTGTACCCTGTTTTATATGTTTGGTTGCGACCAGGCCATGTAATTCCGGTTCTAATCATGAAACTGAAAAAAAAAACAAATTGATAGAGCCGATGAATCAAAGGATTTTGGAGTCACAACAGGGTTTATACTTTCCGAAAAGGCCGAAATTTTGGTAATTTCAGTGGGCACCAA]
[+] EMBL AK109286 [CCTTGCGTTGAGCTTAGCTTTAGCTGATCGAATCGAGAAGAGACGTAAATTAAGCAAGCGATCGATCGAACTGATCTCGTCGGCCGATCGATTGATCGGATTTGGTTCCATGGAGAGGGGTTGCAACGGCAATGGCGGCGGCGGCGGCGGCGTGAAGGTGACCTTCATCGAGACGCAGTTCGTCACCTCCGACGCCGCGGGCTTCAAGTCGCTCGTGCAGCGCCTCACCGGCAACGACGCAGCCGTGCCGGCGGCGCCGCCACAGAGGCCGCGGCCGTGCCGTGCAGACGGGTGGAGGGGAGCCGGCGGCGCGAGCGCGACGGTGGTGAAGCGGGAAGCCGTGCCGCCGCCGGTGGCGCCGTGGGTGGATGAGATGATGATGCTGTACGAGACGTGCGACCTCGCCGAGATGTTGCGCGTCGACGTCGTCGGCGCGAGCGGCGGAGGACGGTGCCACGGCGGCGGCGGATACGGTGGTTTTCCATGCTGATCGACGGCCGGCGATGAGCTCAGTCCATCTTCAGTTTTGGATGCTCTCTGCATGTTGTTCCATTCTTTTTTAACTGAGATTATCTGTATATTGCTCCATGCCTTGTTGTACCCTGTTTTATATGTTTGGTTGCGACCAGGCCATGTAATTCCGGTTCTAATCATGAAACTGAAAAAAAAAACAAATTGATAGAGCCGATGAATCAAAGGATTTTGGAGTCACAACAGGGTTTATACTTTCCGAAAAGGCCGAAATTTTGGTAATTTCAGTGGGCACCAA]
consensusID : consensus_3340#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 163 fasta sequence
[TGAGATTATCTGTATATTGCTCCATGCCTTGTTGTACCCTGTTTTATATGTTTGGTTGCGACCAGGCCATGTAATTCCGGTTCTAATCATGAAACTGAAAAAAAAAACAAATTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA]
[+] EMBL CF319407 [TGAGATTATCTGTATATTGCTCCATGCCTTGTTGTACCCTGTTTTATATGTTTGGTTGCGACCAGGCCATGTAATTCCGGTTCTAATCATGAAACTGAAAAAAAAAACAAATTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3340#0 CCTTGCGTTGAGCTTAGCTTTAGCTGATCGAATCGAGAAGAGACGTAAATTAAGCAAGCG 60
consensus_3340#1 ------------------------------------------------------------
consensus_3340#0 ATCGATCGAACTGATCTCGTCGGCCGATCGATTGATCGGATTTGGTTCCATGGAGAGGGG 120
consensus_3340#1 ------------------------------------------------------------
consensus_3340#0 TTGCAACGGCAATGGCGGCGGCGGCGGCGGCGTGAAGGTGACCTTCATCGAGACGCAGTT 180
consensus_3340#1 ------------------------------------------------------------
consensus_3340#0 CGTCACCTCCGACGCCGCGGGCTTCAAGTCGCTCGTGCAGCGCCTCACCGGCAACGACGC 240
consensus_3340#1 ------------------------------------------------------------
consensus_3340#0 AGCCGTGCCGGCGGCGCCGCCACAGAGGCCGCGGCCGTGCCGTGCAGACGGGTGGAGGGG 300
consensus_3340#1 ------------------------------------------------------------
consensus_3340#0 AGCCGGCGGCGCGAGCGCGACGGTGGTGAAGCGGGAAGCCGTGCCGCCGCCGGTGGCGCC 360
consensus_3340#1 ------------------------------------------------------------
consensus_3340#0 GTGGGTGGATGAGATGATGATGCTGTACGAGACGTGCGACCTCGCCGAGATGTTGCGCGT 420
consensus_3340#1 ------------------------------------------------------------
consensus_3340#0 CGACGTCGTCGGCGCGAGCGGCGGAGGACGGTGCCACGGCGGCGGCGGATACGGTGGTTT 480
consensus_3340#1 ------------------------------------------------------------
consensus_3340#0 TCCATGCTGATCGACGGCCGGCGATGAGCTCAGTCCATCTTCAGTTTTGGATGCTCTCTG 540
consensus_3340#1 ------------------------------------------------------------
consensus_3340#0 CATGTTGTTCCATTCTTTTTTAACTGAGATTATCTGTATATTGCTCCATGCCTTGTTGTA 600
consensus_3340#1 ------------------------TGAGATTATCTGTATATTGCTCCATGCCTTGTTGTA 36
************************************
consensus_3340#0 CCCTGTTTTATATGTTTGGTTGCGACCAGGCCATGTAATTCCGGTTCTAATCATGAAACT 660
consensus_3340#1 CCCTGTTTTATATGTTTGGTTGCGACCAGGCCATGTAATTCCGGTTCTAATCATGAAACT 96
************************************************************
consensus_3340#0 GAAAAAAAAAACAAATTGATAGAGCCGATGAATCAAAGGATTTTGGAGTCACAACAGGGT 720
consensus_3340#1 GAAAAAAAAAACAAATTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 156
********************* * * ** *** * * * ** *
consensus_3340#0 TTATACTTTCCGAAAAGGCCGAAATTTTGGTAATTTCAGTGGGCACCAA 769
consensus_3340#1 AAAAGAA------------------------------------------ 163
*
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||