cluster # 3345

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Oryza sativa
cluster # 3345 cluster # 3345 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3345#0 length = 1204 sequences # 1

consensus_3345#1 length = 591 sequences # 1

consensusID : consensus_3345#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1204
fasta sequence

                              [TCTCTCTCTCTCTCTAAAGATTCCATCTTTGATTTCGTTTCTCTCTCTAGAAGGAAGGAAGGAGGTCGCCGGCGGCGATGGGGTTCCCGTCGGTGTGCTACTGCGTGATACTGCCGCAGCCGCTGGTGCTGGTGCTGCAGCTGCTCGACCTGCTGCGCCACGCCTTCCTGCTCTGCCTCTCCGCGCTCGGCCTCGCCGCGCCGCCGCTCCCGGACGAACACCCCGCCTACGCGCCGCCCCCGCCGCCGCCGGCGTCGATGGCGGCCCTCCCCGCCGACCTCGTCTGGGCGTTCCAGCCCGCGCCGGAGCCGGCCGCCATCAAGGCGCGCCTCCCCGCCGTCCGCTACGCCGACTTCGTCAGGTGCCGCCGCGCCGCCGCGGCGGCCGCGGCGTCGTGCGTCGTGTGCCTCGGCGCGCTCGAGGCGCGTCACCGGGTGCGCGAGCTCGGCAACTGCGCGCACGCGTTCCACAAGGCGTGCATCGACAAGTGGGTCGACAAGGGCCAGGCCACCTGCCCGCTCTGCCGCGCCGCCCTCCTCCCCTCCGCCGACGACGCCGACGCCGCCGCCATCGCCGCCACCACCAGGCACCACCTCCCCTCCTTCTGATCCATGTCGCCAAGAACCCATCTTGCTTAGCACCCAACACCCCCTTCCACCCCAAGAGCAACAAGGGTTCCCTCCTCCTTTCTCCACCAATGGATCAAATCCAATCAAAATGGAAGAACACACAACACAAGAGAAGAGAGATAGAGAGAGAAATCAATGGAGGAAGAAGATGAGAGGAGAGAGAGGGGGTGTGTGTGGTGGAGGAGTATTATTGGTAGGTGAGGCACTAATTATGAGGAGGACAAGGATGGCTACCTGCACTGCATTGGATCTGGTGAATTTCAGCCCTAGCTAGCTATAGATCCAACATCTCCTCTCTTCCCTTCTCTTCTCTTCTCTTCACTTCACTTCACATCAACTTTTTCTTTGCTTTTCTTTTTTCTACTTTACTTTCTTCTTTTGTTGCCTTCACCTCCTTTTTGAAATTTTGCTTTCTTTCTCTTTAATTTTTCTCCCTCTTTTTCCTTCTTTTTTTTGAGGGTTTCCTCTCCCCTTGTCATTAACTTAATTTGTAAGGGGGGATTAAGAGAGAGAGATGTGTACATACCTGCCTCCACTTTGACAAATATCGGAATAATAATTTATAATGATGATGA]

[+] EMBL AK108144             [TCTCTCTCTCTCTCTAAAGATTCCATCTTTGATTTCGTTTCTCTCTCTAGAAGGAAGGAAGGAGGTCGCCGGCGGCGATGGGGTTCCCGTCGGTGTGCTACTGCGTGATACTGCCGCAGCCGCTGGTGCTGGTGCTGCAGCTGCTCGACCTGCTGCGCCACGCCTTCCTGCTCTGCCTCTCCGCGCTCGGCCTCGCCGCGCCGCCGCTCCCGGACGAACACCCCGCCTACGCGCCGCCCCCGCCGCCGCCGGCGTCGATGGCGGCCCTCCCCGCCGACCTCGTCTGGGCGTTCCAGCCCGCGCCGGAGCCGGCCGCCATCAAGGCGCGCCTCCCCGCCGTCCGCTACGCCGACTTCGTCAGGTGCCGCCGCGCCGCCGCGGCGGCCGCGGCGTCGTGCGTCGTGTGCCTCGGCGCGCTCGAGGCGCGTCACCGGGTGCGCGAGCTCGGCAACTGCGCGCACGCGTTCCACAAGGCGTGCATCGACAAGTGGGTCGACAAGGGCCAGGCCACCTGCCCGCTCTGCCGCGCCGCCCTCCTCCCCTCCGCCGACGACGCCGACGCCGCCGCCATCGCCGCCACCACCAGGCACCACCTCCCCTCCTTCTGATCCATGTCGCCAAGAACCCATCTTGCTTAGCACCCAACACCCCCTTCCACCCCAAGAGCAACAAGGGTTCCCTCCTCCTTTCTCCACCAATGGATCAAATCCAATCAAAATGGAAGAACACACAACACAAGAGAAGAGAGATAGAGAGAGAAATCAATGGAGGAAGAAGATGAGAGGAGAGAGAGGGGGTGTGTGTGGTGGAGGAGTATTATTGGTAGGTGAGGCACTAATTATGAGGAGGACAAGGATGGCTACCTGCACTGCATTGGATCTGGTGAATTTCAGCCCTAGCTAGCTATAGATCCAACATCTCCTCTCTTCCCTTCTCTTCTCTTCTCTTCACTTCACTTCACATCAACTTTTTCTTTGCTTTTCTTTTTTCTACTTTACTTTCTTCTTTTGTTGCCTTCACCTCCTTTTTGAAATTTTGCTTTCTTTCTCTTTAATTTTTCTCCCTCTTTTTCCTTCTTTTTTTTGAGGGTTTCCTCTCCCCTTGTCATTAACTTAATTTGTAAGGGGGGATTAAGAGAGAGAGATGTGTACATACCTGCCTCCACTTTGACAAATATCGGAATAATAATTTATAATGATGATGA]




>consensus_3345#0
TCTCTCTCTCTCTCTAAAGATTCCATCTTTGATTTCGTTTCTCTCTCTAGAAGGAAGGAA
GGAGGTCGCCGGCGGCGATGGGGTTCCCGTCGGTGTGCTACTGCGTGATACTGCCGCAGC
CGCTGGTGCTGGTGCTGCAGCTGCTCGACCTGCTGCGCCACGCCTTCCTGCTCTGCCTCT
CCGCGCTCGGCCTCGCCGCGCCGCCGCTCCCGGACGAACACCCCGCCTACGCGCCGCCCC
CGCCGCCGCCGGCGTCGATGGCGGCCCTCCCCGCCGACCTCGTCTGGGCGTTCCAGCCCG
CGCCGGAGCCGGCCGCCATCAAGGCGCGCCTCCCCGCCGTCCGCTACGCCGACTTCGTCA
GGTGCCGCCGCGCCGCCGCGGCGGCCGCGGCGTCGTGCGTCGTGTGCCTCGGCGCGCTCG
AGGCGCGTCACCGGGTGCGCGAGCTCGGCAACTGCGCGCACGCGTTCCACAAGGCGTGCA
TCGACAAGTGGGTCGACAAGGGCCAGGCCACCTGCCCGCTCTGCCGCGCCGCCCTCCTCC
CCTCCGCCGACGACGCCGACGCCGCCGCCATCGCCGCCACCACCAGGCACCACCTCCCCT
CCTTCTGATCCATGTCGCCAAGAACCCATCTTGCTTAGCACCCAACACCCCCTTCCACCC
CAAGAGCAACAAGGGTTCCCTCCTCCTTTCTCCACCAATGGATCAAATCCAATCAAAATG
GAAGAACACACAACACAAGAGAAGAGAGATAGAGAGAGAAATCAATGGAGGAAGAAGATG
AGAGGAGAGAGAGGGGGTGTGTGTGGTGGAGGAGTATTATTGGTAGGTGAGGCACTAATT
ATGAGGAGGACAAGGATGGCTACCTGCACTGCATTGGATCTGGTGAATTTCAGCCCTAGC
TAGCTATAGATCCAACATCTCCTCTCTTCCCTTCTCTTCTCTTCTCTTCACTTCACTTCA
CATCAACTTTTTCTTTGCTTTTCTTTTTTCTACTTTACTTTCTTCTTTTGTTGCCTTCAC
CTCCTTTTTGAAATTTTGCTTTCTTTCTCTTTAATTTTTCTCCCTCTTTTTCCTTCTTTT
TTTTGAGGGTTTCCTCTCCCCTTGTCATTAACTTAATTTGTAAGGGGGGATTAAGAGAGA
GAGATGTGTACATACCTGCCTCCACTTTGACAAATATCGGAATAATAATTTATAATGATG
ATGA

consensusID : consensus_3345#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 591
fasta sequence

                              [NCCTCCTNCTTTTNACGTNCAAGACCNTTGNTNCACCAAANCCCNTCACCCAAGNCANAGGGTTCCTCTCNTTTTCCACCAAGGAATCAATCCAATCAAAAGGGAGGANAACCCACCAGGGAGGGAGTGGGGGNGNGAATCAATGGAGGANGAAGATGAGAGGAGAGAGAGGGGTTTGTTTGGTGGAGGAGNATTATTGGTAGGGGGGCACTAATTATGGGGAGGACAAGGATGGCCACCATGCACTGCATTGGATGTGGTGAATTTCAAGCCCTAGCTAGCTATAGATCCAACATCTCCTCTCTTCCCTTCTCTTCTCTTCTCTTCACTTCACTTCACATCAACTTTTTCTTTGCTTTTCTTTTTTCTACTTTACTTTCTTCTTTTGTTGCCTTCACCTCCTTTTTGAAATTTTGCTTTCTTTCTCTTTAATTTTTCTCCCTCTTTTTCCTTCTTTTTTTAGAGGGTTTCCTCTCCCCTTGTCATTAACTTAATTTGTAAGGGGGGATTAAGAGAGAGAGATGTGTACATACCTGCCTCCACTTTGACAAATATTGGAATAATAATTTATAATGATGATGATGATGATGA]

[-] EMBL BE229218             [NCCTCCTNCTTTTNACGTNCAAGACCNTTGNTNCACCAAANCCCNTCACCCAAGNCANAGGGTTCCTCTCNTTTTCCACCAAGGAATCAATCCAATCAAAAGGGAGGANAACCCACCAGGGAGGGAGTGGGGGNGNGAATCAATGGAGGANGAAGATGAGAGGAGAGAGAGGGGTTTGTTTGGTGGAGGAGNATTATTGGTAGGGGGGCACTAATTATGGGGAGGACAAGGATGGCCACCATGCACTGCATTGGATGTGGTGAATTTCAAGCCCTAGCTAGCTATAGATCCAACATCTCCTCTCTTCCCTTCTCTTCTCTTCTCTTCACTTCACTTCACATCAACTTTTTCTTTGCTTTTCTTTTTTCTACTTTACTTTCTTCTTTTGTTGCCTTCACCTCCTTTTTGAAATTTTGCTTTCTTTCTCTTTAATTTTTCTCCCTCTTTTTCCTTCTTTTTTTAGAGGGTTTCCTCTCCCCTTGTCATTAACTTAATTTGTAAGGGGGGATTAAGAGAGAGAGATGTGTACATACCTGCCTCCACTTTGACAAATATTGGAATAATAATTTATAATGATGATGATGATGATGA]




>consensus_3345#1
NCCTCCTNCTTTTNACGTNCAAGACCNTTGNTNCACCAAANCCCNTCACCCAAGNCANAG
GGTTCCTCTCNTTTTCCACCAAGGAATCAATCCAATCAAAAGGGAGGANAACCCACCAGG
GAGGGAGTGGGGGNGNGAATCAATGGAGGANGAAGATGAGAGGAGAGAGAGGGGTTTGTT
TGGTGGAGGAGNATTATTGGTAGGGGGGCACTAATTATGGGGAGGACAAGGATGGCCACC
ATGCACTGCATTGGATGTGGTGAATTTCAAGCCCTAGCTAGCTATAGATCCAACATCTCC
TCTCTTCCCTTCTCTTCTCTTCTCTTCACTTCACTTCACATCAACTTTTTCTTTGCTTTT
CTTTTTTCTACTTTACTTTCTTCTTTTGTTGCCTTCACCTCCTTTTTGAAATTTTGCTTT
CTTTCTCTTTAATTTTTCTCCCTCTTTTTCCTTCTTTTTTTAGAGGGTTTCCTCTCCCCT
TGTCATTAACTTAATTTGTAAGGGGGGATTAAGAGAGAGAGATGTGTACATACCTGCCTC
CACTTTGACAAATATTGGAATAATAATTTATAATGATGATGATGATGATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3345#0      TCTCTCTCTCTCTCTAAAGATTCCATCTTTGATTTCGTTTCTCTCTCTAGAAGGAAGGAA 60
consensus_3345#1      ------------------------------------------------------------
                                                                                  

consensus_3345#0      GGAGGTCGCCGGCGGCGATGGGGTTCCCGTCGGTGTGCTACTGCGTGATACTGCCGCAGC 120
consensus_3345#1      ------------------------------------------------------------
                                                                                  

consensus_3345#0      CGCTGGTGCTGGTGCTGCAGCTGCTCGACCTGCTGCGCCACGCCTTCCTGCTCTGCCTCT 180
consensus_3345#1      ------------------------------------------------------------
                                                                                  

consensus_3345#0      CCGCGCTCGGCCTCGCCGCGCCGCCGCTCCCGGACGAACACCCCGCCTACGCGCCGCCCC 240
consensus_3345#1      ------------------------------------------------------------
                                                                                  

consensus_3345#0      CGCCGCCGCCGGCGTCGATGGCGGCCCTCCCCGCCGACCTCGTCTGGGCGTTCCAGCCCG 300
consensus_3345#1      ------------------------------------------------------------
                                                                                  

consensus_3345#0      CGCCGGAGCCGGCCGCCATCAAGGCGCGCCTCCCCGCCGTCCGCTACGCCGACTTCGTCA 360
consensus_3345#1      ------------------------------------------------------------
                                                                                  

consensus_3345#0      GGTGCCGCCGCGCCGCCGCGGCGGCCGCGGCGTCGTGCGTCGTGTGCCTCGGCGCGCTCG 420
consensus_3345#1      ------------------------------------------------------------
                                                                                  

consensus_3345#0      AGGCGCGTCACCGGGTGCGCGAGCTCGGCAACTGCGCGCACGCGTTCCACAAGGCGTGCA 480
consensus_3345#1      ------------------------------------------------------------
                                                                                  

consensus_3345#0      TCGACAAGTGGGTCGACAAGGGCCAGGCCACCTGCCCGCTCTGCCGCGCCGCCCTCCTCC 540
consensus_3345#1      ------------------------------------------------------------
                                                                                  

consensus_3345#0      CCTCCGCCGACGACGCCGACGCCGCCGCCATCGCCGCCACCACCAGGCACCACCTCCCCT 600
consensus_3345#1      --------------------------------------------------------NCCT 4
                                                                               ***

consensus_3345#0      CCTTCTGATCCATGTCGCCAAGAACCCATCTTGCTTAGCACCCAACACCCCCTTCCACCC 660
consensus_3345#1      CCTNCTT-TTNACGT--NCAAGACC----NTTGNTN--CACCAAANCCCNTCACCCAAGN 55
                      *** **  *  * **   ***** *     *** *   **** **  **  *  ***   

consensus_3345#0      CAAGAGCAACAAGGGTTCCCTCCTCCTTTCTCCACCAATGGATCAAATCCAATCAAAATG 720
consensus_3345#1      CAN--------AGGGTTCCTCTC---NTTTTCCACCAAGGAATCAA-TCCAATCAAAAGG 103
                      **         ********   *    ** ******** * ***** *********** *

consensus_3345#0      GAAGAACACACAACACAAGAGAAGAGAGATAGAGAGAGAAATCAATGGAGGAAGAAGATG 780
consensus_3345#1      GAGGANAACCCACCA----GGGAGGGAG-TGGGGGNGNGAATCAATGGAGGANGAAGATG 158
                      ** **  ** ** **     * ** *** * * *     ************* *******

consensus_3345#0      AGAGGAGAGAGAGGGGGTGTGTGTGGTGGAGGAGTATTATTGGTAGGTGAGGCACTAATT 840
consensus_3345#1      AGAGGAGAGAGAGGGGTT-TGTTTGGTGGAGGAGNATTATTGGTAGG-GGGGCACTAATT 216
                      **************** * *** *********** ************ * **********

consensus_3345#0      ATGAGGAGGACAAGGATGGCTACC-TGCACTGCATTGGATCTGGTGAATTTCA-GCCCTA 898
consensus_3345#1      ATGGGGAGGACAAGGATGGCCACCATGCACTGCATTGGATGTGGTGAATTTCAAGCCCTA 276
                      *** **************** *** *************** ************ ******

consensus_3345#0      GCTAGCTATAGATCCAACATCTCCTCTCTTCCCTTCTCTTCTCTTCTCTTCACTTCACTT 958
consensus_3345#1      GCTAGCTATAGATCCAACATCTCCTCTCTTCCCTTCTCTTCTCTTCTCTTCACTTCACTT 336
                      ************************************************************

consensus_3345#0      CACATCAACTTTTTCTTTGCTTTTCTTTTTTCTACTTTACTTTCTTCTTTTGTTGCCTTC 1018
consensus_3345#1      CACATCAACTTTTTCTTTGCTTTTCTTTTTTCTACTTTACTTTCTTCTTTTGTTGCCTTC 396
                      ************************************************************

consensus_3345#0      ACCTCCTTTTTGAAATTTTGCTTTCTTTCTCTTTAATTTTTCTCCCTCTTTTTCCTTCTT 1078
consensus_3345#1      ACCTCCTTTTTGAAATTTTGCTTTCTTTCTCTTTAATTTTTCTCCCTCTTTTTCCTTCTT 456
                      ************************************************************

consensus_3345#0      TTTTTTGAGGGTTTCCTCTCCCCTTGTCATTAACTTAATTTGTAAGGGGGGATTAAGAGA 1138
consensus_3345#1      TTTTTAGAGGGTTTCCTCTCCCCTTGTCATTAACTTAATTTGTAAGGGGGGATTAAGAGA 516
                      ***** ******************************************************

consensus_3345#0      GAGAGATGTGTACATACCTGCCTCCACTTTGACAAATATCGGAATAATAATTTATAATGA 1198
consensus_3345#1      GAGAGATGTGTACATACCTGCCTCCACTTTGACAAATATTGGAATAATAATTTATAATGA 576
                      *************************************** ********************

consensus_3345#0      TGATGA--------- 1204
consensus_3345#1      TGATGATGATGATGA 591
                      ******