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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3346#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence
[AAGGGGTCCTGTCACTGTCTCTCCGTCTCCATCTCGTTGCCACCTCTGCCCCTTTGTGCTGTATAAATACTTTGGGTTTATTATATCTTGTTTTATTTCCCCAAATAGGACTAACTTTCATGAGATTTTACTTCTATGCAATTCGATATTTGGTGTGCTTTCTAATGCAGACTGTTTTTGTGTGCATGTAGGAAGCTGATTTTATCATCTGAATCAAGTTTAGATTTGTACAATATCTGCACAAATGGAATTGGGGGACAAGGCAGTAGGCTTTATTTTAACCTTGACAAGTCTATCCATCTTTACATACTATACTTTCTGGGTCATCATCCTGCCATTTGTTGACAGTGATCACTTCGTCCACAAGTACTTTCTGCCTCAAGAGTATGCTATTTTGATCCCAGTGCTTGCTGGCGTGATTCTCCTATCTTTCTTAAGCGTGTTCATGGGTCTTGTCATGCTCAAGTCAAAGAAAAAGAAGAAGACCACTTGATTGAATTTAACCATATTTGTTTATTGATTACGATTGCAAGCTCTATACAAGAAAGCAGGTTTTGCATATGATTCCGTTCTATGTAGTGGTTTTTGCATGTAAGTCGTAGTTTCAGCTTTATTATTATTATTTCATTTTTGCTGGTGGGTTGTGAACTAAACTTAAAGTGCATGTTTATATCTTCATGGCTAACTT]
[+] EMBL CA767398 [AAGGGGTCCTGTCACTGTCTCTCCGTCTCCATCTCGTTGCCACCTCTGCCCCTTTGTGCTGTATAAATACTTTGGGTTTATTATATCTTGTTTTATTTCCCCAAATAGGACTAACTTTCATGAGATTTTACTTCTATGCAATTCGATATTTGGTGTGCTTTCTAATGCAGACTGTTTTTGTGTGCATGTAGGAAGCTGATTTTATCATCTGAATCAAGTTTAGATTTGTACAATATCTGCACAAATGGAATTGGGGGACAAGGCAGTAGGCTTTATTTTAACCTTGACAAGTCTATCCATCTTTACATACTATACTTTCTGGGTCATCATCCTGCCATTTGTTGACAGTGATCACTTCGTCCACAAGTACTTTCTGCCTCAAGAGTATGCTATTTTGATCCCAGTGCTTGCTGGCGTGATTCTCCTATCTTTCTTAAGCGTGTTCATGGGTCTTGTCATGCTCAAGTCAAAGAAAAAGAAGAAGACCACTTGATTGAATTTAACCATATTTGTTTATTGATTACGATTGCAAGCTCTATACAAGAAAGCAGGTTTTGCATATGATTCCGTTCTATGTAGTGGTTTTTGCATGTAAGTCGTAGTTTCAGCTTTATTATTATTATTTCATTTTTGCTGGTGGGTTGTGAACTAAACTTAAAGTGCATGTTTATATCTTCATGGCTAACTT]
consensusID : consensus_3346#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence
[CCAAATAGGACTAACTTTCATGAGATTTTACTTCTATGCAATTCGATATTTGGTGTGCTTTCTAATGCAGACTGTTTTTGTGTGCATGTAGGAAGTAGATTTTATCATCTGAATCAAGTTTAGATTTGTACAATATCTGCACAAATGGAATTGGGGGACAAGGCAGTAGGCTTTATTTTAACCTTGACAAGTCTATCCATCTTTACATACTATACTTTCTGGGTCATCATCCTGCCATTTGTTGACAGTGATCACTTCGTCCACAAGTACTTTCTGCCTCAAGAGTATGCTATTTTGATCCCAGTGCTTGCTGGCGTGATTCTCCTATCTTTCTTAAGCGTGTTCATGGGTCTTGTTATGCTCAAGTCAAAGAAAAAGAAGAAGACCACTTGATTGAATTTAACCATATTTGTTTATTGATTACGATTGCAAGCTCTATACAAGAAAGCAGGTTTTGCATATGATTCCGTTCTATGTAGTGGTTTTTGCATGTAAGTCGTAGTTTCAGCTTTATTATTATTATTTCATTTTTGCTGTTGGGTTGTGAACTAAACTTAAAGTGCATGTTTATATCTTCAAAAAAAAAAAAAA]
[+] EMBL AU172822 [CCAAATAGGACTAACTTTCATGAGATTTTACTTCTATGCAATTCGATATTTGGTGTGCTTTCTAATGCAGACTGTTTTTGTGTGCATGTAGGAAGTAGATTTTATCATCTGAATCAAGTTTAGATTTGTACAATATCTGCACAAATGGAATTGGGGGACAAGGCAGTAGGCTTTATTTTAACCTTGACAAGTCTATCCATCTTTACATACTATACTTTCTGGGTCATCATCCTGCCATTTGTTGACAGTGATCACTTCGTCCACAAGTACTTTCTGCCTCAAGAGTATGCTATTTTGATCCCAGTGCTTGCTGGCGTGATTCTCCTATCTTTCTTAAGCGTGTTCATGGGTCTTGTTATGCTCAAGTCAAAGAAAAAGAAGAAGACCACTTGATTGAATTTAACCATATTTGTTTATTGATTACGATTGCAAGCTCTATACAAGAAAGCAGGTTTTGCATATGATTCCGTTCTATGTAGTGGTTTTTGCATGTAAGTCGTAGTTTCAGCTTTATTATTATTATTTCATTTTTGCTGTTGGGTTGTGAACTAAACTTAAAGTGCATGTTTATATCTTCAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3346#0 AAGGGGTCCTGTCACTGTCTCTCCGTCTCCATCTCGTTGCCACCTCTGCCCCTTTGTGCT 60
consensus_3346#1 ------------------------------------------------------------
consensus_3346#0 GTATAAATACTTTGGGTTTATTATATCTTGTTTTATTTCCCCAAATAGGACTAACTTTCA 120
consensus_3346#1 ----------------------------------------CCAAATAGGACTAACTTTCA 20
********************
consensus_3346#0 TGAGATTTTACTTCTATGCAATTCGATATTTGGTGTGCTTTCTAATGCAGACTGTTTTTG 180
consensus_3346#1 TGAGATTTTACTTCTATGCAATTCGATATTTGGTGTGCTTTCTAATGCAGACTGTTTTTG 80
************************************************************
consensus_3346#0 TGTGCATGTAGGAAGCTGATTTTATCATCTGAATCAAGTTTAGATTTGTACAATATCTGC 240
consensus_3346#1 TGTGCATGTAGGAAGTAGATTTTATCATCTGAATCAAGTTTAGATTTGTACAATATCTGC 140
*************** *******************************************
consensus_3346#0 ACAAATGGAATTGGGGGACAAGGCAGTAGGCTTTATTTTAACCTTGACAAGTCTATCCAT 300
consensus_3346#1 ACAAATGGAATTGGGGGACAAGGCAGTAGGCTTTATTTTAACCTTGACAAGTCTATCCAT 200
************************************************************
consensus_3346#0 CTTTACATACTATACTTTCTGGGTCATCATCCTGCCATTTGTTGACAGTGATCACTTCGT 360
consensus_3346#1 CTTTACATACTATACTTTCTGGGTCATCATCCTGCCATTTGTTGACAGTGATCACTTCGT 260
************************************************************
consensus_3346#0 CCACAAGTACTTTCTGCCTCAAGAGTATGCTATTTTGATCCCAGTGCTTGCTGGCGTGAT 420
consensus_3346#1 CCACAAGTACTTTCTGCCTCAAGAGTATGCTATTTTGATCCCAGTGCTTGCTGGCGTGAT 320
************************************************************
consensus_3346#0 TCTCCTATCTTTCTTAAGCGTGTTCATGGGTCTTGTCATGCTCAAGTCAAAGAAAAAGAA 480
consensus_3346#1 TCTCCTATCTTTCTTAAGCGTGTTCATGGGTCTTGTTATGCTCAAGTCAAAGAAAAAGAA 380
************************************ ***********************
consensus_3346#0 GAAGACCACTTGATTGAATTTAACCATATTTGTTTATTGATTACGATTGCAAGCTCTATA 540
consensus_3346#1 GAAGACCACTTGATTGAATTTAACCATATTTGTTTATTGATTACGATTGCAAGCTCTATA 440
************************************************************
consensus_3346#0 CAAGAAAGCAGGTTTTGCATATGATTCCGTTCTATGTAGTGGTTTTTGCATGTAAGTCGT 600
consensus_3346#1 CAAGAAAGCAGGTTTTGCATATGATTCCGTTCTATGTAGTGGTTTTTGCATGTAAGTCGT 500
************************************************************
consensus_3346#0 AGTTTCAGCTTTATTATTATTATTTCATTTTTGCTGGTGGGTTGTGAACTAAACTTAAAG 660
consensus_3346#1 AGTTTCAGCTTTATTATTATTATTTCATTTTTGCTGTTGGGTTGTGAACTAAACTTAAAG 560
************************************ ***********************
consensus_3346#0 TGCATGTTTATATCTTCATGGCTAACTT--- 688
consensus_3346#1 TGCATGTTTATATCTTCAAAAAAAAAAAAAA 591
****************** **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||