These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_335#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence [ACATTCATTATGCCGCCAAAAGCTCAAACACCCTCAAAAGGTTCAAAAAAAGCTGTCACCAAAACCAGCAAAGGTTCAACAGGACCAAAAGGTGAAAAAAAACAAAAACGTCGACGAAAAGAAACCTACTCAATCTATATCTACNAGGTTCTTAAACAAGTTCATCCAGATACTGGTATTTCATCGAAAGCCATGTCAATCATGAACTCATTCGTCAACGATATCTTCGAACGTATTGCCGCTGAAGCTTCACGATTATCGCACTACAACAAGCGATCAACAATTTCATCACGTGAAATTCAAACAGCCGTTCGTCTCTTATTGCCTGGTGAATTAGCCAAACATGCCGTATCAGAAGGTACAAAAGCTGTTACTAAATACACCAGTGCTAAGTAAATTCATGGTGGTTAAATGGAGATGATTATCAACACTCTCCTTCATATGATTAAATATATGAGGGATTTTAAAACCAACAGCCCTCTTTAGGGCTATTTATATTATATATTAAAAATATGGATTCGTGATCAGCTATTTGAATTTGTTGTTCTTGTTGTCCTGGCAAAGGGAATTGATTCTATATACATATATATATC] [+] EMBL CA755693 [ACATTCATTATGCCGCCAAAAGCTCAAACACCCTCAAAAGGTTCAAAAAAAGCTGTCACCAAAACCAGCAAAGGTTCAACAGGACCAAAAGGTGAAAAAAAACAAAAACGTCGACGAAAAGAAACCTACTCAATCTATATCTACNAGGTTCTTAAACAAGTTCATCCAGATACTGGTATTTCATCGAAAGCCATGTCAATCATGAACTCATTCGTCAACGATATCTTCGAACGTATTGCCGCTGAAGCTTCACGATTATCGCACTACAACAAGCGATCAACAATTTCATCACGTGAAATTCAAACAGCCGTTCGTCTCTTATTGCCTGGTGAATTAGCCAAACATGCCGTATCAGAAGGTACAAAAGCTGTTACTAAATACACCAGTGCTAAGTAAATTCATGGTGGTTAAATGGAGATGATTATCAACACTCTCCTTCATATGATTAAATATATGAGGGATTTTAAAACCAACAGCCCTCTTTAGGGCTATTTATATTATATATTAAAAATATGGATTCGTGATCAGCTATTTGAATTTGTTGTTCTTGTTGTCCTGGCAAAGGGAATTGATTCTATATACATATATATATC] consensusID : consensus_335#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence [ACGTCAAATTCAATCAACATGCCACCAAAAACTCCATCGAAAGGTTCGAAAAAAGCCGTTACAAAAACATCAAAAGGAGCGGCCGGTGCCGGTAAATCCGATAAAAAGGTGAAACGTCGCCGAAAAGAAACCTACTCAATCTATATCTACAAAGTTCTTAAACAAGTTCATCCTGATACAGGTATTTCATCGAAAGCAATGTCAATTATGAATTCGTTCGTTAATGATATCTTTGAACGTATTGCTGCTGAATCAAGTCGTTTATCTCATTACAATAAACGATCGACAATTAGCAGTCGAGAAATTCAAACAGCTGTTCGACTCTTATTGCCTGGTGAACTTGCCAAACATGCCGTATCTGAAGGTACAAAAGCTGTTACCAAATACACCAGTGCTAAATGAGCACGTATTTTCTTTGAACTTGATTTAAAACGAACCCAAACAGCCCTCTTTAGGGCTACNAAAAAAAAAAAAAAAAAAAAACTCG] [+] EMBL CA755611 [ACGTCAAATTCAATCAACATGCCACCAAAAACTCCATCGAAAGGTTCGAAAAAAGCCGTTACAAAAACATCAAAAGGAGCGGCCGGTGCCGGTAAATCCGATAAAAAGGTGAAACGTCGCCGAAAAGAAACCTACTCAATCTATATCTACAAAGTTCTTAAACAAGTTCATCCTGATACAGGTATTTCATCGAAAGCAATGTCAATTATGAATTCGTTCGTTAATGATATCTTTGAACGTATTGCTGCTGAATCAAGTCGTTTATCTCATTACAATAAACGATCGACAATTAGCAGTCGAGAAATTCAAACAGCTGTTCGACTCTTATTGCCTGGTGAACTTGCCAAACATGCCGTATCTGAAGGTACAAAAGCTGTTACCAAATACACCAGTGCTAAATGAGCACGTATTTTCTTTGAACTTGATTTAAAACGAACCCAAACAGCCCTCTTTAGGGCTACNAAAAAAAAAAAAAAAAAAAAACTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_335#0 ---------ACATTCATTATGCCGCCAAAAGCTCAAACACCCTCAAAAGGTTCAAAAAAA 51 consensus_335#1 ACGTCAAATTCAATCAACATGCCACCAAAAACTCCA------TCGAAAGGTTCGAAAAAA 54 ** *** ***** ****** *** * ** ******** ****** consensus_335#0 GCTGTCACCAAAACCAGCAAAGGTTCAACAGG-ACCAAAAGGT--GAAAAAAAACAAAAA 108 consensus_335#1 GCCGTTACAAAAACATCAAAAGGAGCGGCCGGTGCCGGTAAATCCGATAAAAAGGTGAAA 114 ** ** ** ***** ***** * * ** ** * * ** ***** *** consensus_335#0 CGTCGACGAAAAGAAACCTACTCAATCTATATCTACNAGGTTCTTAAACAAGTTCATCCA 168 consensus_335#1 CGTCGCCGAAAAGAAACCTACTCAATCTATATCTACAAAGTTCTTAAACAAGTTCATCCT 174 ***** ****************************** * ******************** consensus_335#0 GATACTGGTATTTCATCGAAAGCCATGTCAATCATGAACTCATTCGTCAACGATATCTTC 228 consensus_335#1 GATACAGGTATTTCATCGAAAGCAATGTCAATTATGAATTCGTTCGTTAATGATATCTTT 234 ***** ***************** ******** ***** ** ***** ** ******** consensus_335#0 GAACGTATTGCCGCTGAAGCTTCACGATTATCGCACTACAACAAGCGATCAACAATTTCA 288 consensus_335#1 GAACGTATTGCTGCTGAATCAAGTCGTTTATCTCATTACAATAAACGATCGACAATTAGC 294 *********** ****** * ** ***** ** ***** ** ***** ****** consensus_335#0 TCACGTGAAATTCAAACAGCCGTTCGTCTCTTATTGCCTGGTGAATTAGCCAAACATGCC 348 consensus_335#1 AGTCGAGAAATTCAAACAGCTGTTCGACTCTTATTGCCTGGTGAACTTGCCAAACATGCC 354 ** ************** ***** ****************** * ************ consensus_335#0 GTATCAGAAGGTACAAAAGCTGTTACTAAATACACCAGTGCTAAGTAAATTCATGGTGGT 408 consensus_335#1 GTATCTGAAGGTACAAAAGCTGTTACCAAATACACCAGTGCTAAATGAGCACGT------ 408 ***** ******************** ***************** * * * * consensus_335#0 TAAATGGAGATGATTATCAACACTCTCCTTCATATGATTAAATATATGAGGGATTTTAAA 468 consensus_335#1 ---------------------ATTTTCTTTGA----ACTTGATTTAAAACGAACC----- 438 * * ** ** * * * ** ** * * * consensus_335#0 ACCAACAGCCCTCTTTAGGGCTATTTATATTATATATTAAAAATATGGATTCGTGATCAG 528 consensus_335#1 -CAAACAGCCCTCTTTAGGGCTACNAAA---AAAAAAAAAAAAAAAAAACTCG------- 487 * ******************** * * * * ***** * * *** consensus_335#0 CTATTTGAATTTGTTGTTCTTGTTGTCCTGGCAAAGGGAATTGATTCTATATACATATAT 588 consensus_335#1 ------------------------------------------------------------ consensus_335#0 ATATC 593 consensus_335#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||