cluster # 3354

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Oryza sativa
cluster # 3354 cluster # 3354 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3354#0 length = 705 sequences # 1

consensus_3354#1 length = 272 sequences # 1

consensusID : consensus_3354#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 705
fasta sequence

                              [GAGGTGATCACTGAAGAGGATTTGCAAAATATATTGGCTAAGCTGCGCGATGAACACTACTATTGCCTTTATTGCGGTTGCAAGTATGAATCAGCAGAAGCATTGGCAAATGAATGTCCTGGGCCAAATGAAGATGACCATTAATTCGCTGTGTCTGGGGCAACAAAGAATGGTCCTTGTTACAACAGGATTTGCAAGTTGCTGTAAACGATATTTTGGGACCTATACTGCGAATCACCTTTCACATTTCAGTATCACATCTCAATGTTAGAAATGATAATTCTCTTGCGGCAGCTTAAAGCTACAAGGGTGGAACTGGAAAGCTTCAGGAAGAGTTTACAGTTCTGCATATGGTATGCTCTGCTCCTCCATGTAGAAGGCTTCAAAGGAGCCCTTGCTACAGCTCTTGAAAAGTCCAAATCAAGGTGCCTCTCCTCACAGTGAAAAAGAGTCGTGTCAATGGAACAAGTGATCTGCGACATATGATAATGATAAGCAGATGGCGCCAAAGCAATTATACATTTCTGTTTTCCAATCACGGTGATAACTGTTCAAGTTGGTAGTACTGTGTTTAGGATGGCACTGATATTTTTGATTCATTCTAGCAATACATCATACACCTGTTGCTGGGATCTATCTTCAATGCAATGATGGTTTTACAACTGTGTCAAATCTTGCATGTGACATTAAGATCCATAATCACTG]

[+] EMBL AK068450             [GAGGTGATCACTGAAGAGGATTTGCAAAATATATTGGCTAAGCTGCGCGATGAACACTACTATTGCCTTTATTGCGGTTGCAAGTATGAATCAGCAGAAGCATTGGCAAATGAATGTCCTGGGCCAAATGAAGATGACCATTAATTCGCTGTGTCTGGGGCAACAAAGAATGGTCCTTGTTACAACAGGATTTGCAAGTTGCTGTAAACGATATTTTGGGACCTATACTGCGAATCACCTTTCACATTTCAGTATCACATCTCAATGTTAGAAATGATAATTCTCTTGCGGCAGCTTAAAGCTACAAGGGTGGAACTGGAAAGCTTCAGGAAGAGTTTACAGTTCTGCATATGGTATGCTCTGCTCCTCCATGTAGAAGGCTTCAAAGGAGCCCTTGCTACAGCTCTTGAAAAGTCCAAATCAAGGTGCCTCTCCTCACAGTGAAAAAGAGTCGTGTCAATGGAACAAGTGATCTGCGACATATGATAATGATAAGCAGATGGCGCCAAAGCAATTATACATTTCTGTTTTCCAATCACGGTGATAACTGTTCAAGTTGGTAGTACTGTGTTTAGGATGGCACTGATATTTTTGATTCATTCTAGCAATACATCATACACCTGTTGCTGGGATCTATCTTCAATGCAATGATGGTTTTACAACTGTGTCAAATCTTGCATGTGACATTAAGATCCATAATCACTG]




>consensus_3354#0
GAGGTGATCACTGAAGAGGATTTGCAAAATATATTGGCTAAGCTGCGCGATGAACACTAC
TATTGCCTTTATTGCGGTTGCAAGTATGAATCAGCAGAAGCATTGGCAAATGAATGTCCT
GGGCCAAATGAAGATGACCATTAATTCGCTGTGTCTGGGGCAACAAAGAATGGTCCTTGT
TACAACAGGATTTGCAAGTTGCTGTAAACGATATTTTGGGACCTATACTGCGAATCACCT
TTCACATTTCAGTATCACATCTCAATGTTAGAAATGATAATTCTCTTGCGGCAGCTTAAA
GCTACAAGGGTGGAACTGGAAAGCTTCAGGAAGAGTTTACAGTTCTGCATATGGTATGCT
CTGCTCCTCCATGTAGAAGGCTTCAAAGGAGCCCTTGCTACAGCTCTTGAAAAGTCCAAA
TCAAGGTGCCTCTCCTCACAGTGAAAAAGAGTCGTGTCAATGGAACAAGTGATCTGCGAC
ATATGATAATGATAAGCAGATGGCGCCAAAGCAATTATACATTTCTGTTTTCCAATCACG
GTGATAACTGTTCAAGTTGGTAGTACTGTGTTTAGGATGGCACTGATATTTTTGATTCAT
TCTAGCAATACATCATACACCTGTTGCTGGGATCTATCTTCAATGCAATGATGGTTTTAC
AACTGTGTCAAATCTTGCATGTGACATTAAGATCCATAATCACTG

consensusID : consensus_3354#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 272
fasta sequence

                              [AAGGAGCCCNTGCTACAGCTCTTNAAAAGTCCAAATCAAGGTGCCTCTCCTCNCAGTGAAAAANAGTCGTGTCAATGGAACAAGTGATNTGCGACATATGATAATGATAAGCAGATGGCGCCAAAGCAATTATACATTTNTGTTTTCCAATCNCGGTGATAACTGTTCAAGTTGGTAGTACTGTGTTTAGGATGGCNCTGATATTTTTGATTCATTCTAGCAATACATCATACACCTGTTGCTGGGNTCCAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU172859             [AAGGAGCCCNTGCTACAGCTCTTNAAAAGTCCAAATCAAGGTGCCTCTCCTCNCAGTGAAAAANAGTCGTGTCAATGGAACAAGTGATNTGCGACATATGATAATGATAAGCAGATGGCGCCAAAGCAATTATACATTTNTGTTTTCCAATCNCGGTGATAACTGTTCAAGTTGGTAGTACTGTGTTTAGGATGGCNCTGATATTTTTGATTCATTCTAGCAATACATCATACACCTGTTGCTGGGNTCCAAAAAAAAAAAAAAAAAAAAAA]




>consensus_3354#1
AAGGAGCCCNTGCTACAGCTCTTNAAAAGTCCAAATCAAGGTGCCTCTCCTCNCAGTGAA
AAANAGTCGTGTCAATGGAACAAGTGATNTGCGACATATGATAATGATAAGCAGATGGCG
CCAAAGCAATTATACATTTNTGTTTTCCAATCNCGGTGATAACTGTTCAAGTTGGTAGTA
CTGTGTTTAGGATGGCNCTGATATTTTTGATTCATTCTAGCAATACATCATACACCTGTT
GCTGGGNTCCAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3354#0      GAGGTGATCACTGAAGAGGATTTGCAAAATATATTGGCTAAGCTGCGCGATGAACACTAC 60
consensus_3354#1      ------------------------------------------------------------
                                                                                  

consensus_3354#0      TATTGCCTTTATTGCGGTTGCAAGTATGAATCAGCAGAAGCATTGGCAAATGAATGTCCT 120
consensus_3354#1      ------------------------------------------------------------
                                                                                  

consensus_3354#0      GGGCCAAATGAAGATGACCATTAATTCGCTGTGTCTGGGGCAACAAAGAATGGTCCTTGT 180
consensus_3354#1      ------------------------------------------------------------
                                                                                  

consensus_3354#0      TACAACAGGATTTGCAAGTTGCTGTAAACGATATTTTGGGACCTATACTGCGAATCACCT 240
consensus_3354#1      ------------------------------------------------------------
                                                                                  

consensus_3354#0      TTCACATTTCAGTATCACATCTCAATGTTAGAAATGATAATTCTCTTGCGGCAGCTTAAA 300
consensus_3354#1      ------------------------------------------------------------
                                                                                  

consensus_3354#0      GCTACAAGGGTGGAACTGGAAAGCTTCAGGAAGAGTTTACAGTTCTGCATATGGTATGCT 360
consensus_3354#1      ------------------------------------------------------------
                                                                                  

consensus_3354#0      CTGCTCCTCCATGTAGAAGGCTTCAAAGGAGCCCTTGCTACAGCTCTTGAAAAGTCCAAA 420
consensus_3354#1      -------------------------AAGGAGCCCNTGCTACAGCTCTTNAAAAGTCCAAA 35
                                               ********* ************* ***********

consensus_3354#0      TCAAGGTGCCTCTCCTCACAGTGAAAAAGAGTCGTGTCAATGGAACAAGTGATCTGCGAC 480
consensus_3354#1      TCAAGGTGCCTCTCCTCNCAGTGAAAAANAGTCGTGTCAATGGAACAAGTGATNTGCGAC 95
                      ***************** ********** ************************ ******

consensus_3354#0      ATATGATAATGATAAGCAGATGGCGCCAAAGCAATTATACATTTCTGTTTTCCAATCACG 540
consensus_3354#1      ATATGATAATGATAAGCAGATGGCGCCAAAGCAATTATACATTTNTGTTTTCCAATCNCG 155
                      ******************************************** ************ **

consensus_3354#0      GTGATAACTGTTCAAGTTGGTAGTACTGTGTTTAGGATGGCACTGATATTTTTGATTCAT 600
consensus_3354#1      GTGATAACTGTTCAAGTTGGTAGTACTGTGTTTAGGATGGCNCTGATATTTTTGATTCAT 215
                      ***************************************** ******************

consensus_3354#0      TCTAGCAATACATCATACACCTGTTGCTGGGATCTATCTTCAATGCAATGATGGTTTTAC 660
consensus_3354#1      TCTAGCAATACATCATACACCTGTTGCTGGGNTCCAAAAAAAAAAAAAAAAAAAAAA--- 272
                      ******************************* ** *     **   **  *         

consensus_3354#0      AACTGTGTCAAATCTTGCATGTGACATTAAGATCCATAATCACTG 705
consensus_3354#1      ---------------------------------------------