These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3362#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1439 fasta sequence [ACCAGACACACTCATTCACCTCACAGTCGTCGTCGACATGAAGGGTCTTTTCGCTACCGCCTTTTTGGCCACTGGCGCTTTCGCGCTCCCATCTCCTGTGGAGAATGGTCCCATCACTGCCCGCGCGGCAGCTGCTTGCGCTACTCCCGTCACCATCTCTGGCAACCCCTTCGCTTCCCGCTCCATCTACCCTAACAAGTTCTACTCTTCTGAGGTTGTTTCGGCTGCTGCTGCCATGACCGATACTGCCCTTGCTGCCAAGGCCAAGAAGGTCGCTGACATTGGTACTTTCCTGTGGATCGATACTCGATCCAAGATCGACGTTGTTGAGGATGGTATCAAGGACGTTGCTTGCGATCAGATCGCCGCCCTTGTCATCTACGATCTTCCCGGTCGTGACTGCGCCGCCAAAGCCTCCAACGGTGAGCTTGCCGTTGGTGAGATCAACGTCTACAAGACCGAGTACATTGACCCCATCGTTGCCATCTTCAAGAAGTACCCCAACGTGGCCATTGCTCTGGTCATCGAGCCCGATTCGCTCCCTAACTTGGTCACCAACATCGACCTCCAGACCTGCAAGGACTCTGCCGATGGTTACAAGGAGGGTGTCGCCTATGCCCTCAAGTCGCTCAACTTGCCCAACATCGCCATGTACATCGATGCTGGTCACGGTGGATGGCTCGGCTGGAACGACAACCTGAAGCCCGGTGCCAAGGGTCTTGCTGATGTCTACAAGCTCGCTGGCAGCCCCTCAGGTGTCCACGGTGTTGCCACCAACGTTGCTGGCTGGAACTCCTACGACCTCTCCCCTGGAGAGTTCTCCAAGGCCACCGATGCTCAGTGGAACAAGGCCCAGAACGAGAAGGAGTACGTCGCCCTCTTCTCTCCCGAGCTCAAGTCTGCTGGTATGCCCGGCCAGGCCATCATCGACACTGCCCGTAACGGTGTCACTGGTCTCCGCCAGGAGTGGGGCAACTGGTGCAACATCAACGGTGCTGGTTTCGGTGTCCGCCCAACTGGCTCCACTGGCAACTCGCTCGTCGATGCCTTCGTCTGGGTCAAGCCCGGTGGTGAGTCTGACGGTACCTCCGACACCTCTGCCAAGCGCTACGACTCCTTCTGCGGAAAGAGCGAGTCCTTCAAGCCCTCGCCCGAGGCCGGTCAGTGGAACCAGGCTTACTTCGAGATGCTCGTCAAGAACGCCAACCCCCCTCTATAAATTCTTCAATAGAGCGGCTAGGCGTGTAGTGTCTTGGGGCCACAGACATGTACAGACTTCCCAAGTCGCACACACATTTCTTGTATATAGATCAATGACTTGATGGAGTGTCTGTAAGAGGACGACGACGTGGAATGAGGCGAATGAGAGGTGTTCGATCAGGCAAAATTCTCGCTTCACTTCGCTGTCTATAGTATATAACTCAAGAATGGCATCTCTC] [+] EMBL AK108992 [ACCAGACACACTCATTCACCTCACAGTCGTCGTCGACATGAAGGGTCTTTTCGCTACCGCCTTTTTGGCCACTGGCGCTTTCGCGCTCCCATCTCCTGTGGAGAATGGTCCCATCACTGCCCGCGCGGCAGCTGCTTGCGCTACTCCCGTCACCATCTCTGGCAACCCCTTCGCTTCCCGCTCCATCTACCCTAACAAGTTCTACTCTTCTGAGGTTGTTTCGGCTGCTGCTGCCATGACCGATACTGCCCTTGCTGCCAAGGCCAAGAAGGTCGCTGACATTGGTACTTTCCTGTGGATCGATACTCGATCCAAGATCGACGTTGTTGAGGATGGTATCAAGGACGTTGCTTGCGATCAGATCGCCGCCCTTGTCATCTACGATCTTCCCGGTCGTGACTGCGCCGCCAAAGCCTCCAACGGTGAGCTTGCCGTTGGTGAGATCAACGTCTACAAGACCGAGTACATTGACCCCATCGTTGCCATCTTCAAGAAGTACCCCAACGTGGCCATTGCTCTGGTCATCGAGCCCGATTCGCTCCCTAACTTGGTCACCAACATCGACCTCCAGACCTGCAAGGACTCTGCCGATGGTTACAAGGAGGGTGTCGCCTATGCCCTCAAGTCGCTCAACTTGCCCAACATCGCCATGTACATCGATGCTGGTCACGGTGGATGGCTCGGCTGGAACGACAACCTGAAGCCCGGTGCCAAGGGTCTTGCTGATGTCTACAAGCTCGCTGGCAGCCCCTCAGGTGTCCACGGTGTTGCCACCAACGTTGCTGGCTGGAACTCCTACGACCTCTCCCCTGGAGAGTTCTCCAAGGCCACCGATGCTCAGTGGAACAAGGCCCAGAACGAGAAGGAGTACGTCGCCCTCTTCTCTCCCGAGCTCAAGTCTGCTGGTATGCCCGGCCAGGCCATCATCGACACTGCCCGTAACGGTGTCACTGGTCTCCGCCAGGAGTGGGGCAACTGGTGCAACATCAACGGTGCTGGTTTCGGTGTCCGCCCAACTGGCTCCACTGGCAACTCGCTCGTCGATGCCTTCGTCTGGGTCAAGCCCGGTGGTGAGTCTGACGGTACCTCCGACACCTCTGCCAAGCGCTACGACTCCTTCTGCGGAAAGAGCGAGTCCTTCAAGCCCTCGCCCGAGGCCGGTCAGTGGAACCAGGCTTACTTCGAGATGCTCGTCAAGAACGCCAACCCCCCTCTATAAATTCTTCAATAGAGCGGCTAGGCGTGTAGTGTCTTGGGGCCACAGACATGTACAGACTTCCCAAGTCGCACACACATTTCTTGTATATAGATCAATGACTTGATGGAGTGTCTGTAAGAGGACGACGACGTGGAATGAGGCGAATGAGAGGTGTTCGATCAGGCAAAATTCTCGCTTCACTTCGCTGTCTATAGTATATAACTCAAGAATGGCATCTCTC] consensusID : consensus_3362#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1434 fasta sequence [GCCCCAAGCACTCACTCACTTCCAACAGTCGACATCATGAAGGGTCTTTTCACCGCCGTCCTGGCATCTGCCGCCTCGTGCGTGCTCGCCGCTCCCTCCCCCGTTGAGCAGGGTCCCATCACTGCTCGTGCCGCTGGCGCCGCTGCTGCAGCATGTGCCACTCCCGTCACTCTTTCTGGCAACCCCTTCGCCTCCCGCAAGATCTATGCCAACAAGTTCTACTCATCTGAGGTCGTCTCGGCTGCGTCTGCTATGAGCGACCCTGCTCTGGCTTCGGCCGCTGCTAAGGTTGCCGACATCGGTACCTTCTTGTGGATCGATACCCGTGCCAAGATCAACGAGGTCGTCGAAGATGGTGTCAAGGATGTTCCTTGCGACCAGATCGCCGCTCTTGTCATCTACGACCTGCCCGGCCGTGATTGTGCTGCCAAGGCATCCAACGGAGAGCTTCCCGTTGGTAGCTTGAGTACTTACAAGACTGAGTACATTGACCCCATCGTCGCCATCTTCAAGAAGTACCCCAACGTGGCCATTGCTCTGGTCATTGAGCCCGATTCCCTCCCCAACCTGGTCACCAACGCCGACCTCCAGACTTGCAAGGACTCCGCATCTGGCTACCGCGATGGTGTTGCGTACGCCCTCAAGTCGCTTAACTTGCCCAACATTGCCATGTACATCGATGCTGGTCACGGAGGCTGGCTCGGCTGGAACGACAACCTGAAGCCCGGTGCTCAAGAACTCGCCAAGGTCTACAAGGCCGCCGGCTCCCCCAAGCAAGTCCGCGGTGTCTCCACCAACGTCGCCGGCTGGAACTCATACGACCTCTCCCCAGGAGAGTTCTCCAAGGCCACCGACGCCCAGTGGAACAAGGCACAAAACGAGAAGCAATTCGTCGCACTCTTCTCGCCCGAGCTCAAGTCTGCTGGCATGCCCGGCCAAGCCATCATCGACACTGGCCGTAACGGTGTCACTGGTCTCCGCCAGGAGTGGGGCCACTGGTGCAACGTCAAGGGCGCTGGCTTCGGTGTTCGCCCCACTGGCAGCACCGGCAACAGCCTTGTTGACGCCTTTGTGTGGGTCAAGCCAGGTGGTGAGTCGGATGGTACTTCTGACTCGTCCGCGACCCGATACGACAGCTTCTGCGGTATGCCTGATGCGTACACCCCATCCCCCGAGGCTGGACAGTGGAACCAGGCCTACTTTGAGGACCTTGTCAAGAACGCTAAGCCAGCTTTGTAAGCGACGCGGAGCTAGGCAGATAATGCCAGCTTTTTTTTGGTGATTGGGACAGTCACTTGTATATAGATTTATGATGTGGAGGACGAGGAGAGAGGCAAAAAGAGGTGGATGAAGATGAGGATGGAGATCCGGTATTGTTTTCATGTACATTCACCTTTTTGATAAAATGCAAAATGCAAAGACTCTCGTTTAGAA] [+] EMBL AK110544 [GCCCCAAGCACTCACTCACTTCCAACAGTCGACATCATGAAGGGTCTTTTCACCGCCGTCCTGGCATCTGCCGCCTCGTGCGTGCTCGCCGCTCCCTCCCCCGTTGAGCAGGGTCCCATCACTGCTCGTGCCGCTGGCGCCGCTGCTGCAGCATGTGCCACTCCCGTCACTCTTTCTGGCAACCCCTTCGCCTCCCGCAAGATCTATGCCAACAAGTTCTACTCATCTGAGGTCGTCTCGGCTGCGTCTGCTATGAGCGACCCTGCTCTGGCTTCGGCCGCTGCTAAGGTTGCCGACATCGGTACCTTCTTGTGGATCGATACCCGTGCCAAGATCAACGAGGTCGTCGAAGATGGTGTCAAGGATGTTCCTTGCGACCAGATCGCCGCTCTTGTCATCTACGACCTGCCCGGCCGTGATTGTGCTGCCAAGGCATCCAACGGAGAGCTTCCCGTTGGTAGCTTGAGTACTTACAAGACTGAGTACATTGACCCCATCGTCGCCATCTTCAAGAAGTACCCCAACGTGGCCATTGCTCTGGTCATTGAGCCCGATTCCCTCCCCAACCTGGTCACCAACGCCGACCTCCAGACTTGCAAGGACTCCGCATCTGGCTACCGCGATGGTGTTGCGTACGCCCTCAAGTCGCTTAACTTGCCCAACATTGCCATGTACATCGATGCTGGTCACGGAGGCTGGCTCGGCTGGAACGACAACCTGAAGCCCGGTGCTCAAGAACTCGCCAAGGTCTACAAGGCCGCCGGCTCCCCCAAGCAAGTCCGCGGTGTCTCCACCAACGTCGCCGGCTGGAACTCATACGACCTCTCCCCAGGAGAGTTCTCCAAGGCCACCGACGCCCAGTGGAACAAGGCACAAAACGAGAAGCAATTCGTCGCACTCTTCTCGCCCGAGCTCAAGTCTGCTGGCATGCCCGGCCAAGCCATCATCGACACTGGCCGTAACGGTGTCACTGGTCTCCGCCAGGAGTGGGGCCACTGGTGCAACGTCAAGGGCGCTGGCTTCGGTGTTCGCCCCACTGGCAGCACCGGCAACAGCCTTGTTGACGCCTTTGTGTGGGTCAAGCCAGGTGGTGAGTCGGATGGTACTTCTGACTCGTCCGCGACCCGATACGACAGCTTCTGCGGTATGCCTGATGCGTACACCCCATCCCCCGAGGCTGGACAGTGGAACCAGGCCTACTTTGAGGACCTTGTCAAGAACGCTAAGCCAGCTTTGTAAGCGACGCGGAGCTAGGCAGATAATGCCAGCTTTTTTTTGGTGATTGGGACAGTCACTTGTATATAGATTTATGATGTGGAGGACGAGGAGAGAGGCAAAAAGAGGTGGATGAAGATGAGGATGGAGATCCGGTATTGTTTTCATGTACATTCACCTTTTTGATAAAATGCAAAATGCAAAGACTCTCGTTTAGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3362#0 ACCAGACACACTCATTCACCTCACAGTCGTCGTCGACATGAAGGGTCTTTTCGCTACCGC 60 consensus_3362#1 GCCCCAAGCACTCACTCACTTC-CAACAGTCGACATCATGAAGGGTCTTTTCACCGCCGT 59 ** * ****** **** ** ** **** * **************** * *** consensus_3362#0 CTTTTTGGCCACTGGCGCTTTCGCGCTC------CCATCTCCTGTGGAGAATGGTCCCAT 114 consensus_3362#1 CCTGGCATCTGCCGCCTCGTGCGTGCTCGCCGCTCCCTCCCCCGTTGAGCAGGGTCCCAT 119 * * * * * * * * ** **** ** ** ** ** *** * ******** consensus_3362#0 CACTGCCCG------------CGCGGCAGCTGCTTGCGCTACTCCCGTCACCATCTCTGG 162 consensus_3362#1 CACTGCTCGTGCCGCTGGCGCCGCTGCTGCAGCATGTGCCACTCCCGTCACTCTTTCTGG 179 ****** ** *** ** ** ** ** ** *********** * ***** consensus_3362#0 CAACCCCTTCGCTTCCCGCTCCATCTACCCTAACAAGTTCTACTCTTCTGAGGTTGTTTC 222 consensus_3362#1 CAACCCCTTCGCCTCCCGCAAGATCTATGCCAACAAGTTCTACTCATCTGAGGTCGTCTC 239 ************ ****** ***** * ************** ******** ** ** consensus_3362#0 GGCTGCTGCTGCCATGACCGATACTGCCCTTGCTGCCAAGGCCAAGAAGGTCGCTGACAT 282 consensus_3362#1 GGCTGCGTCTGCTATGAGCGACCCTGCTCTGGCTTCGGCCGCTGCTAAGGTTGCCGACAT 299 ****** **** **** *** **** ** *** * ** ***** ** ***** consensus_3362#0 TGGTACTTTCCTGTGGATCGATACTCGATCCAAGATCGACG---TTGTTGAGGATGGTAT 339 consensus_3362#1 CGGTACCTTCTTGTGGATCGATACCCGTGCCAAGATCAACGAGGTCGTCGAAGATGGTGT 359 ***** *** ************* ** ******** *** * ** ** ****** * consensus_3362#0 CAAGGACGTTGCTTGCGATCAGATCGCCGCCCTTGTCATCTACGATCTTCCCGGTCGTGA 399 consensus_3362#1 CAAGGATGTTCCTTGCGACCAGATCGCCGCTCTTGTCATCTACGACCTGCCCGGCCGTGA 419 ****** *** ******* *********** ************** ** ***** ***** consensus_3362#0 CTGCGCCGCCAAAGCCTCCAACGGTGAGCTTGCCGTTGGTGAGATCAACGTCTACAAGAC 459 consensus_3362#1 TTGTGCTGCCAAGGCATCCAACGGAGAGCTTCCCGTTGGTAGCTTGAGTACTTACAAGAC 479 ** ** ***** ** ******** ****** ******** * * ******** consensus_3362#0 CGAGTACATTGACCCCATCGTTGCCATCTTCAAGAAGTACCCCAACGTGGCCATTGCTCT 519 consensus_3362#1 TGAGTACATTGACCCCATCGTCGCCATCTTCAAGAAGTACCCCAACGTGGCCATTGCTCT 539 ******************** ************************************** consensus_3362#0 GGTCATCGAGCCCGATTCGCTCCCTAACTTGGTCACCAACATCGACCTCCAGACCTGCAA 579 consensus_3362#1 GGTCATTGAGCCCGATTCCCTCCCCAACCTGGTCACCAACGCCGACCTCCAGACTTGCAA 599 ****** *********** ***** *** *********** ************ ***** consensus_3362#0 GGACTCTGCCGATGGTTACAAGGAGGGTGTCGCCTATGCCCTCAAGTCGCTCAACTTGCC 639 consensus_3362#1 GGACTCCGCATCTGGCTACCGCGATGGTGTTGCGTACGCCCTCAAGTCGCTTAACTTGCC 659 ****** ** *** *** ** ***** ** ** ************** ******** consensus_3362#0 CAACATCGCCATGTACATCGATGCTGGTCACGGTGGATGGCTCGGCTGGAACGACAACCT 699 consensus_3362#1 CAACATTGCCATGTACATCGATGCTGGTCACGGAGGCTGGCTCGGCTGGAACGACAACCT 719 ****** ************************** ** *********************** consensus_3362#0 GAAGCCCGGTGCCAAGGGTCTTGCTGATGTCTACAAGCTCGCTGGCAGCCCCTCAGGTGT 759 consensus_3362#1 GAAGCCCGGTGCTCAAGAACTCGCCAAGGTCTACAAGGCCGCCGGCTCCCCCAAGCAAGT 779 ************ * * ** ** * ********* *** *** **** ** consensus_3362#0 CCACGGTGTTGCCACCAACGTTGCTGGCTGGAACTCCTACGACCTCTCCCCTGGAGAGTT 819 consensus_3362#1 CCGCGGTGTCTCCACCAACGTCGCCGGCTGGAACTCATACGACCTCTCCCCAGGAGAGTT 839 ** ****** ********** ** *********** ************** ******** consensus_3362#0 CTCCAAGGCCACCGATGCTCAGTGGAACAAGGCCCAGAACGAGAAGGAGTACGTCGCCCT 879 consensus_3362#1 CTCCAAGGCCACCGACGCCCAGTGGAACAAGGCACAAAACGAGAAGCAATTCGTCGCACT 899 *************** ** ************** ** ********* * * ****** ** consensus_3362#0 CTTCTCTCCCGAGCTCAAGTCTGCTGGTATGCCCGGCCAGGCCATCATCGACACTGCCCG 939 consensus_3362#1 CTTCTCGCCCGAGCTCAAGTCTGCTGGCATGCCCGGCCAAGCCATCATCGACACTGGCCG 959 ****** ******************** *********** **************** *** consensus_3362#0 TAACGGTGTCACTGGTCTCCGCCAGGAGTGGGGCAACTGGTGCAACATCAACGGTGCTGG 999 consensus_3362#1 TAACGGTGTCACTGGTCTCCGCCAGGAGTGGGGCCACTGGTGCAACGTCAAGGGCGCTGG 1019 ********************************** *********** **** ** ***** consensus_3362#0 TTTCGGTGTCCGCCCAACTGGCTCCACTGGCAACTCGCTCGTCGATGCCTTCGTCTGGGT 1059 consensus_3362#1 CTTCGGTGTTCGCCCCACTGGCAGCACCGGCAACAGCCTTGTTGACGCCTTTGTGTGGGT 1079 ******** ***** ****** *** ****** ** ** ** ***** ** ***** consensus_3362#0 CAAGCCCGGTGGTGAGTCTGACGGTACCTCCGACACCTCTGCCAAGCGCTACGACTCCTT 1119 consensus_3362#1 CAAGCCAGGTGGTGAGTCGGATGGTACTTCTGACTCGTCCGCGACCCGATACGACAGCTT 1139 ****** *********** ** ***** ** *** * ** ** * ** ****** *** consensus_3362#0 CTGCGGAAAGAGCGAGTCCTTCAAGCCCTCGCCCGAGGCCGGTCAGTGGAACCAGGCTTA 1179 consensus_3362#1 CTGCGGTATGCCTGATGCGTACACCCCATCCCCCGAGGCTGGACAGTGGAACCAGGCCTA 1199 ****** * * ** * * ** ** ** ******** ** ************** ** consensus_3362#0 CTTCGAGATGCTCGTCAAGAACGCCAACCCCCCTCTATAAATTCTTCAATAGAGCGGCTA 1239 consensus_3362#1 CTTTGAGGACCTTGTCAAGAACGCTAAGCCAGCTTTGTAAG-----CGAC-GCGGAGCTA 1253 *** *** ** *********** ** ** ** * *** * * * * **** consensus_3362#0 GGCGTGTAGTGTCTTGGGGCCACAGACATGTACAGACTTCCCAAGTCGCACACACATTTC 1299 consensus_3362#1 GGCAGATAATGCC----------AGCTTTTT-----TTTGGTGATTGGGACAGTCA---C 1295 *** ** ** * ** * * ** * * * *** ** * consensus_3362#0 TTGTATATAGATCAATGACTTGATGGAGTGTCTGTAAGAGGACGACGACGTGGAATGAGG 1359 consensus_3362#1 TTGTATATAGATTTATGATGTGGAGGACG------AGGAGAGAGGCAAAAAGAGGTG-GA 1348 ************ **** ** *** * *** * * * * ** * consensus_3362#0 CGAATGAGAGGTGTTCGATCAGGCAAAATTCTCGCTTCACTTCGCTGTCT--ATAGTATA 1417 consensus_3362#1 TGAAGATGAGGATGGAGATCCGGTATTGTTTTCATGTACATTCACCTTTTTGATAAAATG 1408 *** **** **** ** * ** ** * *** * * * *** ** consensus_3362#0 TAACTCAAGAATGGCATCTCTC---- 1439 consensus_3362#1 CAAAATGCAAAGACTCTCGTTTAGAA 1434 ** ** ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||