cluster # 3367

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Oryza sativa
cluster # 3367 cluster # 3367 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3367#0 length = 1009 sequences # 1

consensus_3367#1 length = 431 sequences # 1

consensusID : consensus_3367#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1009
fasta sequence

                              [GGCCGGAGGACATGGCGTACCCACGCCCCGTCCAGACGGCCGGCTCGGCGCCGGACCTCGGCGGCGAGATGGCGGCGGCGCTCGCGGCGGCCTCCATCGTGTTCCGCGACAACGCCGCCTACTCCAAGAAGCTCGTGAACGGCGCGGCCGCCGTGTACAAGTTCGCGCGCAGCAGCGGCCGCCGCACCCCGTACTCCCGCGGCAACCAGTACATCGAGTACTACTACAACTCCACCAGCTACTGGGACGAGTACATGTGGAGCGCGGCGTGGATGTACTACGCCACGGGGAACAACACCTACATCACCTTCGCCACCGACCCGCGGCTGCCCAAGAACGCCAAGGCCTTCTACAGCATCCTCGACTTCTCCGTCTTCAGCTGGGACAACAAGCTGCCGGGCGCCGAGCTGCTGCTGTCGCGGCTCCGCATGTTCCTCAACCCGGGTTACCCCTACGAGGAGTCGCTCATCGGGTACCACAACACCACCAGCATGAACATGTGCACCTACTTCCCGCGCTTCGGCGCCTTCAACTTCACCAAGGGTGGGCTCGCGCAGTTCAACCACGGGAAGGGCCAGCCGCTGCAGTACACCGTCGCCAACTTCTTCCTTGCCGCGCTCTACGCCGACTACATGGAGTCCGTCAACGGTCCCCGGCTGGTACTGGGGGCCCTACTTCATGACCCGGGACGATCTCCCGTCCTTCGCCAGGTCTCAGGTGAACACATTCTTGGGGATAACCCGAGGAGATGAGCTACGTGGTGGGGCCGGAAGAATTACCGCGGGGGTGCCCACAGGGGGCGTGGCCCCCACCACGGGATAAATCCTTGGGCCCGGGGGGCACAAGGGGGGACACCAGGGCGCGCCCAACGTCTCTGGGGCCTGGTGGGGACCGCAGACACCATTAAGAGCCGGCTACTCCCCAAAAGCCCCTGGGGGACCCGCTAGGCCCCCTATGGCTCAACGGCCGTTGGTTATGGCTGAAGAGTGGATAGTGGTTAGATCGACGG]

[+] EMBL BE040704             [GGCCGGAGGACATGGCGTACCCACGCCCCGTCCAGACGGCCGGCTCGGCGCCGGACCTCGGCGGCGAGATGGCGGCGGCGCTCGCGGCGGCCTCCATCGTGTTCCGCGACAACGCCGCCTACTCCAAGAAGCTCGTGAACGGCGCGGCCGCCGTGTACAAGTTCGCGCGCAGCAGCGGCCGCCGCACCCCGTACTCCCGCGGCAACCAGTACATCGAGTACTACTACAACTCCACCAGCTACTGGGACGAGTACATGTGGAGCGCGGCGTGGATGTACTACGCCACGGGGAACAACACCTACATCACCTTCGCCACCGACCCGCGGCTGCCCAAGAACGCCAAGGCCTTCTACAGCATCCTCGACTTCTCCGTCTTCAGCTGGGACAACAAGCTGCCGGGCGCCGAGCTGCTGCTGTCGCGGCTCCGCATGTTCCTCAACCCGGGTTACCCCTACGAGGAGTCGCTCATCGGGTACCACAACACCACCAGCATGAACATGTGCACCTACTTCCCGCGCTTCGGCGCCTTCAACTTCACCAAGGGTGGGCTCGCGCAGTTCAACCACGGGAAGGGCCAGCCGCTGCAGTACACCGTCGCCAACTTCTTCCTTGCCGCGCTCTACGCCGACTACATGGAGTCCGTCAACGGTCCCCGGCTGGTACTGGGGGCCCTACTTCATGACCCGGGACGATCTCCCGTCCTTCGCCAGGTCTCAGGTGAACACATTCTTGGGGATAACCCGAGGAGATGAGCTACGTGGTGGGGCCGGAAGAATTACCGCGGGGGTGCCCACAGGGGGCGTGGCCCCCACCACGGGATAAATCCTTGGGCCCGGGGGGCACAAGGGGGGACACCAGGGCGCGCCCAACGTCTCTGGGGCCTGGTGGGGACCGCAGACACCATTAAGAGCCGGCTACTCCCCAAAAGCCCCTGGGGGACCCGCTAGGCCCCCTATGGCTCAACGGCCGTTGGTTATGGCTGAAGAGTGGATAGTGGTTAGATCGACGG]




>consensus_3367#0
GGCCGGAGGACATGGCGTACCCACGCCCCGTCCAGACGGCCGGCTCGGCGCCGGACCTCG
GCGGCGAGATGGCGGCGGCGCTCGCGGCGGCCTCCATCGTGTTCCGCGACAACGCCGCCT
ACTCCAAGAAGCTCGTGAACGGCGCGGCCGCCGTGTACAAGTTCGCGCGCAGCAGCGGCC
GCCGCACCCCGTACTCCCGCGGCAACCAGTACATCGAGTACTACTACAACTCCACCAGCT
ACTGGGACGAGTACATGTGGAGCGCGGCGTGGATGTACTACGCCACGGGGAACAACACCT
ACATCACCTTCGCCACCGACCCGCGGCTGCCCAAGAACGCCAAGGCCTTCTACAGCATCC
TCGACTTCTCCGTCTTCAGCTGGGACAACAAGCTGCCGGGCGCCGAGCTGCTGCTGTCGC
GGCTCCGCATGTTCCTCAACCCGGGTTACCCCTACGAGGAGTCGCTCATCGGGTACCACA
ACACCACCAGCATGAACATGTGCACCTACTTCCCGCGCTTCGGCGCCTTCAACTTCACCA
AGGGTGGGCTCGCGCAGTTCAACCACGGGAAGGGCCAGCCGCTGCAGTACACCGTCGCCA
ACTTCTTCCTTGCCGCGCTCTACGCCGACTACATGGAGTCCGTCAACGGTCCCCGGCTGG
TACTGGGGGCCCTACTTCATGACCCGGGACGATCTCCCGTCCTTCGCCAGGTCTCAGGTG
AACACATTCTTGGGGATAACCCGAGGAGATGAGCTACGTGGTGGGGCCGGAAGAATTACC
GCGGGGGTGCCCACAGGGGGCGTGGCCCCCACCACGGGATAAATCCTTGGGCCCGGGGGG
CACAAGGGGGGACACCAGGGCGCGCCCAACGTCTCTGGGGCCTGGTGGGGACCGCAGACA
CCATTAAGAGCCGGCTACTCCCCAAAAGCCCCTGGGGGACCCGCTAGGCCCCCTATGGCT
CAACGGCCGTTGGTTATGGCTGAAGAGTGGATAGTGGTTAGATCGACGG

consensusID : consensus_3367#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 431
fasta sequence

                              [ACTTCACCAAGGGTGGGCTCGCGCAGTTCAACCACGGGAAGGGCCAGCCGCTGCAGTACACCGTCGCCAACTCCTTCCTCGCCGCGCTCTACGCCGACTACATGGAGTCCGTCAACGTCCCCGGCTGGTACTGCGGCCCCTACTTCATGACCGTCGACGATCTCCGCTCCTTCGCCAGGTCTCAGGTGAACTACATTCTTGGGGATAACCCGAAGAAGATGAGCTACGTGGTGGGGTACGGCAAGAAGTACCCGCGGCGGCTGCACCACAGGGGGGCGTCGACGCCGCACAACGGCATCAAGTACTCGTGCACCGGCGGGTACAAGTGGAGGGACACCAAGGGGGCCGACCCGAACGTGCTCGTCGGCGCCATGGTCGGCGGGCCGGACAAGAACGACCAGTTCAAGGACGCGCGCCTCACCTACGCGCAG]

[+] EMBL AU173081             [ACTTCACCAAGGGTGGGCTCGCGCAGTTCAACCACGGGAAGGGCCAGCCGCTGCAGTACACCGTCGCCAACTCCTTCCTCGCCGCGCTCTACGCCGACTACATGGAGTCCGTCAACGTCCCCGGCTGGTACTGCGGCCCCTACTTCATGACCGTCGACGATCTCCGCTCCTTCGCCAGGTCTCAGGTGAACTACATTCTTGGGGATAACCCGAAGAAGATGAGCTACGTGGTGGGGTACGGCAAGAAGTACCCGCGGCGGCTGCACCACAGGGGGGCGTCGACGCCGCACAACGGCATCAAGTACTCGTGCACCGGCGGGTACAAGTGGAGGGACACCAAGGGGGCCGACCCGAACGTGCTCGTCGGCGCCATGGTCGGCGGGCCGGACAAGAACGACCAGTTCAAGGACGCGCGCCTCACCTACGCGCAG]




>consensus_3367#1
ACTTCACCAAGGGTGGGCTCGCGCAGTTCAACCACGGGAAGGGCCAGCCGCTGCAGTACA
CCGTCGCCAACTCCTTCCTCGCCGCGCTCTACGCCGACTACATGGAGTCCGTCAACGTCC
CCGGCTGGTACTGCGGCCCCTACTTCATGACCGTCGACGATCTCCGCTCCTTCGCCAGGT
CTCAGGTGAACTACATTCTTGGGGATAACCCGAAGAAGATGAGCTACGTGGTGGGGTACG
GCAAGAAGTACCCGCGGCGGCTGCACCACAGGGGGGCGTCGACGCCGCACAACGGCATCA
AGTACTCGTGCACCGGCGGGTACAAGTGGAGGGACACCAAGGGGGCCGACCCGAACGTGC
TCGTCGGCGCCATGGTCGGCGGGCCGGACAAGAACGACCAGTTCAAGGACGCGCGCCTCA
CCTACGCGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3367#0      GGCCGGAGGACATGGCGTACCCACGCCCCGTCCAGACGGCCGGCTCGGCGCCGGACCTCG 60
consensus_3367#1      ------------------------------------------------------------
                                                                                  

consensus_3367#0      GCGGCGAGATGGCGGCGGCGCTCGCGGCGGCCTCCATCGTGTTCCGCGACAACGCCGCCT 120
consensus_3367#1      ------------------------------------------------------------
                                                                                  

consensus_3367#0      ACTCCAAGAAGCTCGTGAACGGCGCGGCCGCCGTGTACAAGTTCGCGCGCAGCAGCGGCC 180
consensus_3367#1      ------------------------------------------------------------
                                                                                  

consensus_3367#0      GCCGCACCCCGTACTCCCGCGGCAACCAGTACATCGAGTACTACTACAACTCCACCAGCT 240
consensus_3367#1      ------------------------------------------------------------
                                                                                  

consensus_3367#0      ACTGGGACGAGTACATGTGGAGCGCGGCGTGGATGTACTACGCCACGGGGAACAACACCT 300
consensus_3367#1      ------------------------------------------------------------
                                                                                  

consensus_3367#0      ACATCACCTTCGCCACCGACCCGCGGCTGCCCAAGAACGCCAAGGCCTTCTACAGCATCC 360
consensus_3367#1      ------------------------------------------------------------
                                                                                  

consensus_3367#0      TCGACTTCTCCGTCTTCAGCTGGGACAACAAGCTGCCGGGCGCCGAGCTGCTGCTGTCGC 420
consensus_3367#1      ------------------------------------------------------------
                                                                                  

consensus_3367#0      GGCTCCGCATGTTCCTCAACCCGGGTTACCCCTACGAGGAGTCGCTCATCGGGTACCACA 480
consensus_3367#1      ------------------------------------------------------------
                                                                                  

consensus_3367#0      ACACCACCAGCATGAACATGTGCACCTACTTCCCGCGCTTCGGCGCCTTCAACTTCACCA 540
consensus_3367#1      ---------------------------------------------------ACTTCACCA 9
                                                                         *********

consensus_3367#0      AGGGTGGGCTCGCGCAGTTCAACCACGGGAAGGGCCAGCCGCTGCAGTACACCGTCGCCA 600
consensus_3367#1      AGGGTGGGCTCGCGCAGTTCAACCACGGGAAGGGCCAGCCGCTGCAGTACACCGTCGCCA 69
                      ************************************************************

consensus_3367#0      ACTTCTTCCTTGCCGCGCTCTACGCCGACTACATGGAGTCCGTCAACGGTCCCCGGCTGG 660
consensus_3367#1      ACTCCTTCCTCGCCGCGCTCTACGCCGACTACATGGAGTCCGTCAACG-TCCCCGGCTGG 128
                      *** ****** ************************************* ***********

consensus_3367#0      TACTGGGGGCCCTACTTCATGACCCGGGACGATCTCCCGTCCTTCGCCAGGTCTCAGGTG 720
consensus_3367#1      TACTGCGGCCCCTACTTCATGACCGTCGACGATCTCCGCTCCTTCGCCAGGTCTCAGGTG 188
                      ***** ** ***************   **********  *********************

consensus_3367#0      AAC-ACATTCTTGGGGATAACCCGAGGA-GATGAGCTACGTGGTGGGG--CCGGAAGAAT 776
consensus_3367#1      AACTACATTCTTGGGGATAACCCGAAGAAGATGAGCTACGTGGTGGGGTACGGCAAGAAG 248
                      *** ********************* ** *******************  * * ***** 

consensus_3367#0      TACC-GCGGGGG-TGC-CCACAGGGGG-CGTGGCCCCC--ACCACGGGAT-AAATCCTTG 829
consensus_3367#1      TACCCGCGGCGGCTGCACCACAGGGGGGCGTCGACGCCGCACAACGGCATCAAGTACTCG 308
                      **** **** ** *** ********** *** * * **  ** **** ** ** * ** *

consensus_3367#0      GGC-CCGGGGGGCACAAG--GGGGGACACCAGGGCGCGCCCAACGTCTCTGGGGCCTGGT 886
consensus_3367#1      TGCACCGGCGGGTACAAGTGGAGGGACACCAAGGGG-GCC------------GACCCGAA 355
                       ** **** *** *****  * ********* ** * ***            * ** *  

consensus_3367#0      GGGGACCGCAGACACCATTAAGAGCCGGCTACTCCCCAAAAGCCC-CTGGGGGACCCGCT 945
consensus_3367#1      CGTGCTCGTCGGCGCCATGGTCGGCGGGCCGGACAAGAACGACCAGTTCAAGGACGCGC- 414
                       * *  **  * * ****     ** ***    *   **   **   *   **** *** 

consensus_3367#0      AGGCCCCCTATGGCTCAACGGCCGTTGGTTATGGCTGAAGAGTGGATAGTGGTTAGATCG 1005
consensus_3367#1      -GCCTCACCTACGCGCAG------------------------------------------ 431
                       * * * *    ** **                                           

consensus_3367#0      ACGG 1009
consensus_3367#1      ----