cluster # 3370

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Oryza sativa
cluster # 3370 cluster # 3370 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3370#0 length = 866 sequences # 1

consensus_3370#1 length = 842 sequences # 1

consensusID : consensus_3370#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 866
fasta sequence

                              [GGAGAGCTCCCTGGGCACTCTTCCTCCTCTCCTCTCATCGCCCCTTCCATCTCCCAAGGTGACCAAGCATAGTTCGAACAATATCTGTTGTCAAAGGGATTTCTTCTTTTAGAATTGGATCTTGTGGGGTTGAAATTTTAATTTATATATCCTTTCCCAATTCCATGGCTACAATACAAAAGCTCTATGAGGTCTGCAAAGTGTCATCATCTGCAAATGGGTCGTTATCTCCTGAAGGTGTTGACAGTGTTTGTTCAGTGTTAGAATTTCCTAGCAGACAATGTCATGCCTTCTGATGTTGGACTTGAGACTGAAGCACAATCTGTACGCTCTTGGAGAAGTCCACGAGTTCTGAATAGGAAAGCGGTTTTTCATTCGAGCACCACAATCAGATATCGTCACATATATGAGTGCAAAAATTTCTCGATTGGAATATTTTGTATTCCAGCATCATCCATCATTCCACTCCACAACCATCCAGGCATGACTGTATTCAGTAAACTTCTATATGGTACCGTGCATGTTAAATCGTACGATTGGGTTGAGGATACAACTCAACTGCTTAAATTATCAAAAGNTAGACCTGCCAAGATTGTAAGGGATGGTGAGATGTCTGCACCATGCGGCGCAATGGGTATTCAACCAAAAGATGGGGGGGAACATCCATGCTTTCAAAGNCATCACCCCCTGGGCTATCCTGGACATCTTATCANCTNCTTATTCTTCANAAGATGGAAGGCATTGCTNCTACTTNCGCANATGCCGAAAGCANACCCGTCGGGCATTTTATCAAANCGATCGGGGGAACCGGAATTGGTTTGGCTGGAANAACCCCAGCCCCCTAACAGCTTTGTTNTANAAGGGAC]

[+] EMBL CB096415             [GGAGAGCTCCCTGGGCACTCTTCCTCCTCTCCTCTCATCGCCCCTTCCATCTCCCAAGGTGACCAAGCATAGTTCGAACAATATCTGTTGTCAAAGGGATTTCTTCTTTTAGAATTGGATCTTGTGGGGTTGAAATTTTAATTTATATATCCTTTCCCAATTCCATGGCTACAATACAAAAGCTCTATGAGGTCTGCAAAGTGTCATCATCTGCAAATGGGTCGTTATCTCCTGAAGGTGTTGACAGTGTTTGTTCAGTGTTAGAATTTCCTAGCAGACAATGTCATGCCTTCTGATGTTGGACTTGAGACTGAAGCACAATCTGTACGCTCTTGGAGAAGTCCACGAGTTCTGAATAGGAAAGCGGTTTTTCATTCGAGCACCACAATCAGATATCGTCACATATATGAGTGCAAAAATTTCTCGATTGGAATATTTTGTATTCCAGCATCATCCATCATTCCACTCCACAACCATCCAGGCATGACTGTATTCAGTAAACTTCTATATGGTACCGTGCATGTTAAATCGTACGATTGGGTTGAGGATACAACTCAACTGCTTAAATTATCAAAAGNTAGACCTGCCAAGATTGTAAGGGATGGTGAGATGTCTGCACCATGCGGCGCAATGGGTATTCAACCAAAAGATGGGGGGGAACATCCATGCTTTCAAAGNCATCACCCCCTGGGCTATCCTGGACATCTTATCANCTNCTTATTCTTCANAAGATGGAAGGCATTGCTNCTACTTNCGCANATGCCGAAAGCANACCCGTCGGGCATTTTATCAAANCGATCGGGGGAACCGGAATTGGTTTGGCTGGAANAACCCCAGCCCCCTAACAGCTTTGTTNTANAAGGGAC]




>consensus_3370#0
GGAGAGCTCCCTGGGCACTCTTCCTCCTCTCCTCTCATCGCCCCTTCCATCTCCCAAGGT
GACCAAGCATAGTTCGAACAATATCTGTTGTCAAAGGGATTTCTTCTTTTAGAATTGGAT
CTTGTGGGGTTGAAATTTTAATTTATATATCCTTTCCCAATTCCATGGCTACAATACAAA
AGCTCTATGAGGTCTGCAAAGTGTCATCATCTGCAAATGGGTCGTTATCTCCTGAAGGTG
TTGACAGTGTTTGTTCAGTGTTAGAATTTCCTAGCAGACAATGTCATGCCTTCTGATGTT
GGACTTGAGACTGAAGCACAATCTGTACGCTCTTGGAGAAGTCCACGAGTTCTGAATAGG
AAAGCGGTTTTTCATTCGAGCACCACAATCAGATATCGTCACATATATGAGTGCAAAAAT
TTCTCGATTGGAATATTTTGTATTCCAGCATCATCCATCATTCCACTCCACAACCATCCA
GGCATGACTGTATTCAGTAAACTTCTATATGGTACCGTGCATGTTAAATCGTACGATTGG
GTTGAGGATACAACTCAACTGCTTAAATTATCAAAAGNTAGACCTGCCAAGATTGTAAGG
GATGGTGAGATGTCTGCACCATGCGGCGCAATGGGTATTCAACCAAAAGATGGGGGGGAA
CATCCATGCTTTCAAAGNCATCACCCCCTGGGCTATCCTGGACATCTTATCANCTNCTTA
TTCTTCANAAGATGGAAGGCATTGCTNCTACTTNCGCANATGCCGAAAGCANACCCGTCG
GGCATTTTATCAAANCGATCGGGGGAACCGGAATTGGTTTGGCTGGAANAACCCCAGCCC
CCTAACAGCTTTGTTNTANAAGGGAC

consensusID : consensus_3370#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 842
fasta sequence

                              [GGAGAGCTCCCTGGGCACTCTTCCTCCTCTCCTCTCATCGCCCCTTCCATCTCCCAAGGTGACCAAGCATAGTTCGAACAATATCTGTTGTCAAAGGGATTTCTTCTTTTAGAATTGGATCTTGTGGGGTTGAAATTTTAATTTATATATCCTTTCCCAATTCCATGGCTACAATACAAAAGCTCTATGAGGTCTGCAAAGTGTCATTATCTGCAAATGGGTCGTTATCTCCTGAAGCTGTTGACAGTGTTTGTTCAGTGTTAGACAATGTCATGCCTTCTGATGTTGGACTTGAGACTGAAGCACAATCTGTACGCTCTTGGAGAAGTCCACGAGTTCTGAATAGGAAAGCGGTTTTTCATTCGAGCACCACAATCAGATATCGTCACATATATGAGTGCAAAAATTTCTCGATTGGAATATTTTGTATTCCAGCATCATCCATCATTCCACTCCACAACCATCCAGGCATGACTGTATTCAGTAAACTTCTATATGGTACCGTGCATGTTAAATCGTACGATTGGGTTGAGGATACAACTCAACTGCTTAAATTATCAAAAGTTAGACCTGCCAAGATTGTAAGGGATGGTGAGATGTCTGCACCATGCGGCGCAATGGTTATTCAACCAAAAGATGGGGGGAACATCCATGCTTTCAAAGCCATCACCCCCTGTGCTATCCTGGACATCTTATCACCTNCTTATTCTTCANAAGATGGAANGCATTGCTCCTACTTNCGCAGATGCCGAAAGCANACCCGTCGGGCATTTTATCAAACCGATCGAGGGAACCTGAATTTGTTTGGCTGGNANAACACCAGCCCCTAACAGCTTTGGTNN]

[+] EMBL CA767117             [GGAGAGCTCCCTGGGCACTCTTCCTCCTCTCCTCTCATCGCCCCTTCCATCTCCCAAGGTGACCAAGCATAGTTCGAACAATATCTGTTGTCAAAGGGATTTCTTCTTTTAGAATTGGATCTTGTGGGGTTGAAATTTTAATTTATATATCCTTTCCCAATTCCATGGCTACAATACAAAAGCTCTATGAGGTCTGCAAAGTGTCATTATCTGCAAATGGGTCGTTATCTCCTGAAGCTGTTGACAGTGTTTGTTCAGTGTTAGACAATGTCATGCCTTCTGATGTTGGACTTGAGACTGAAGCACAATCTGTACGCTCTTGGAGAAGTCCACGAGTTCTGAATAGGAAAGCGGTTTTTCATTCGAGCACCACAATCAGATATCGTCACATATATGAGTGCAAAAATTTCTCGATTGGAATATTTTGTATTCCAGCATCATCCATCATTCCACTCCACAACCATCCAGGCATGACTGTATTCAGTAAACTTCTATATGGTACCGTGCATGTTAAATCGTACGATTGGGTTGAGGATACAACTCAACTGCTTAAATTATCAAAAGTTAGACCTGCCAAGATTGTAAGGGATGGTGAGATGTCTGCACCATGCGGCGCAATGGTTATTCAACCAAAAGATGGGGGGAACATCCATGCTTTCAAAGCCATCACCCCCTGTGCTATCCTGGACATCTTATCACCTNCTTATTCTTCANAAGATGGAANGCATTGCTCCTACTTNCGCAGATGCCGAAAGCANACCCGTCGGGCATTTTATCAAACCGATCGAGGGAACCTGAATTTGTTTGGCTGGNANAACACCAGCCCCTAACAGCTTTGGTNN]




>consensus_3370#1
GGAGAGCTCCCTGGGCACTCTTCCTCCTCTCCTCTCATCGCCCCTTCCATCTCCCAAGGT
GACCAAGCATAGTTCGAACAATATCTGTTGTCAAAGGGATTTCTTCTTTTAGAATTGGAT
CTTGTGGGGTTGAAATTTTAATTTATATATCCTTTCCCAATTCCATGGCTACAATACAAA
AGCTCTATGAGGTCTGCAAAGTGTCATTATCTGCAAATGGGTCGTTATCTCCTGAAGCTG
TTGACAGTGTTTGTTCAGTGTTAGACAATGTCATGCCTTCTGATGTTGGACTTGAGACTG
AAGCACAATCTGTACGCTCTTGGAGAAGTCCACGAGTTCTGAATAGGAAAGCGGTTTTTC
ATTCGAGCACCACAATCAGATATCGTCACATATATGAGTGCAAAAATTTCTCGATTGGAA
TATTTTGTATTCCAGCATCATCCATCATTCCACTCCACAACCATCCAGGCATGACTGTAT
TCAGTAAACTTCTATATGGTACCGTGCATGTTAAATCGTACGATTGGGTTGAGGATACAA
CTCAACTGCTTAAATTATCAAAAGTTAGACCTGCCAAGATTGTAAGGGATGGTGAGATGT
CTGCACCATGCGGCGCAATGGTTATTCAACCAAAAGATGGGGGGAACATCCATGCTTTCA
AAGCCATCACCCCCTGTGCTATCCTGGACATCTTATCACCTNCTTATTCTTCANAAGATG
GAANGCATTGCTCCTACTTNCGCAGATGCCGAAAGCANACCCGTCGGGCATTTTATCAAA
CCGATCGAGGGAACCTGAATTTGTTTGGCTGGNANAACACCAGCCCCTAACAGCTTTGGT
NN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3370#0      GGAGAGCTCCCTGGGCACTCTTCCTCCTCTCCTCTCATCGCCCCTTCCATCTCCCAAGGT 60
consensus_3370#1      GGAGAGCTCCCTGGGCACTCTTCCTCCTCTCCTCTCATCGCCCCTTCCATCTCCCAAGGT 60
                      ************************************************************

consensus_3370#0      GACCAAGCATAGTTCGAACAATATCTGTTGTCAAAGGGATTTCTTCTTTTAGAATTGGAT 120
consensus_3370#1      GACCAAGCATAGTTCGAACAATATCTGTTGTCAAAGGGATTTCTTCTTTTAGAATTGGAT 120
                      ************************************************************

consensus_3370#0      CTTGTGGGGTTGAAATTTTAATTTATATATCCTTTCCCAATTCCATGGCTACAATACAAA 180
consensus_3370#1      CTTGTGGGGTTGAAATTTTAATTTATATATCCTTTCCCAATTCCATGGCTACAATACAAA 180
                      ************************************************************

consensus_3370#0      AGCTCTATGAGGTCTGCAAAGTGTCATCATCTGCAAATGGGTCGTTATCTCCTGAAGGTG 240
consensus_3370#1      AGCTCTATGAGGTCTGCAAAGTGTCATTATCTGCAAATGGGTCGTTATCTCCTGAAGCTG 240
                      *************************** ***************************** **

consensus_3370#0      TTGACAGTGTTTGTTCAGTGTTAGAATTTCCTAGCAGACAATGTCATGCCTTCTGATGTT 300
consensus_3370#1      TTGACAGTGTTTGTTCAGTGTTAGA-------------CAATGTCATGCCTTCTGATGTT 287
                      *************************             **********************

consensus_3370#0      GGACTTGAGACTGAAGCACAATCTGTACGCTCTTGGAGAAGTCCACGAGTTCTGAATAGG 360
consensus_3370#1      GGACTTGAGACTGAAGCACAATCTGTACGCTCTTGGAGAAGTCCACGAGTTCTGAATAGG 347
                      ************************************************************

consensus_3370#0      AAAGCGGTTTTTCATTCGAGCACCACAATCAGATATCGTCACATATATGAGTGCAAAAAT 420
consensus_3370#1      AAAGCGGTTTTTCATTCGAGCACCACAATCAGATATCGTCACATATATGAGTGCAAAAAT 407
                      ************************************************************

consensus_3370#0      TTCTCGATTGGAATATTTTGTATTCCAGCATCATCCATCATTCCACTCCACAACCATCCA 480
consensus_3370#1      TTCTCGATTGGAATATTTTGTATTCCAGCATCATCCATCATTCCACTCCACAACCATCCA 467
                      ************************************************************

consensus_3370#0      GGCATGACTGTATTCAGTAAACTTCTATATGGTACCGTGCATGTTAAATCGTACGATTGG 540
consensus_3370#1      GGCATGACTGTATTCAGTAAACTTCTATATGGTACCGTGCATGTTAAATCGTACGATTGG 527
                      ************************************************************

consensus_3370#0      GTTGAGGATACAACTCAACTGCTTAAATTATCAAAAGNTAGACCTGCCAAGATTGTAAGG 600
consensus_3370#1      GTTGAGGATACAACTCAACTGCTTAAATTATCAAAAGTTAGACCTGCCAAGATTGTAAGG 587
                      ************************************* **********************

consensus_3370#0      GATGGTGAGATGTCTGCACCATGCGGCGCAATGGGTATTCAACCAAAAGATGGGGGGGAA 660
consensus_3370#1      GATGGTGAGATGTCTGCACCATGCGGCGCAATGGTTATTCAACCAAAAGATGGGGGG-AA 646
                      ********************************** ********************** **

consensus_3370#0      CATCCATGCTTTCAAAGNCATCACCCCCTGGGCTATCCTGGACATCTTATCANCTNCTTA 720
consensus_3370#1      CATCCATGCTTTCAAAGCCATCACCCCCTGTGCTATCCTGGACATCTTATCACCTNCTTA 706
                      ***************** ************ ********************* *******

consensus_3370#0      TTCTTCANAAGATGGAAGGCATTGCTNCTACTTNCGCANATGCCGAAAGCANACCCGTCG 780
consensus_3370#1      TTCTTCANAAGATGGAANGCATTGCTCCTACTTNCGCAGATGCCGAAAGCANACCCGTCG 766
                      ***************** ******** *********** *********************

consensus_3370#0      GGCATTTTATCAAANCGATCGGGGGAACCGGAATTGGTTTGGCTGGAANAACCCCAGCCC 840
consensus_3370#1      GGCATTTTATCAAACCGATCGAGGGAACCTGAATTTGTTTGGCTGGNANAACACCAGCCC 826
                      ************** ****** ******* ***** ********** ***** *******

consensus_3370#0      CCTAACAGCTTTGTTNTANAAGGGAC 866
consensus_3370#1      C-TAACAGCTTTGGTNN--------- 842
                      * *********** **