These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3377#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence [TGGAAACGCCGAATAACCAGTGATGAAGCCACTGCTACTGCTCATCTCCTCCATTGTAGTGATGACATTCTTACTCCTCCTGAGCGGCGCCGGCGCTCTCACCGCCGATCACGCCACCGTCGGCGTCGCCGTGGCCGGCGGCAAGCGCACCCGCCACGCGGAGGAACTAAGTGAGATGGATTCGGTGCCGTACCCGCAAAGAAGGGTGCTACAAGGTGGCAACACTGTCTACAGACCGCTTGGCAGAGGTGCGGCTTGCAACCCTATTTGCCCTGGTCGCGGAGACAGGTACACTGGCCGTGGCTGCAAATCCCGTTACCAGTGCAGGGGCATGTAAGATATCTCCATCAGGGTGCATGATAATATCTTCACACCCTATGTACGCATGCATGCTTGGAAATTATTGGGCAGTTCAGCAGTTGTTCTATGTACATCGATGGAGTAGGTTGAACACTCAGTTGATCTCGTCTTTTTTCAGTATTGTTACGGTATTCCAGGCATATAAACACTCATG] [+] EMBL AK099523 [TGGAAACGCCGAATAACCAGTGATGAAGCCACTGCTACTGCTCATCTCCTCCATTGTAGTGATGACATTCTTACTCCTCCTGAGCGGCGCCGGCGCTCTCACCGCCGATCACGCCACCGTCGGCGTCGCCGTGGCCGGCGGCAAGCGCACCCGCCACGCGGAGGAACTAAGTGAGATGGATTCGGTGCCGTACCCGCAAAGAAGGGTGCTACAAGGTGGCAACACTGTCTACAGACCGCTTGGCAGAGGTGCGGCTTGCAACCCTATTTGCCCTGGTCGCGGAGACAGGTACACTGGCCGTGGCTGCAAATCCCGTTACCAGTGCAGGGGCATGTAAGATATCTCCATCAGGGTGCATGATAATATCTTCACACCCTATGTACGCATGCATGCTTGGAAATTATTGGGCAGTTCAGCAGTTGTTCTATGTACATCGATGGAGTAGGTTGAACACTCAGTTGATCTCGTCTTTTTTCAGTATTGTTACGGTATTCCAGGCATATAAACACTCATG] consensusID : consensus_3377#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 499 fasta sequence [GGCAAAAAAGGGTGCTACAAGGGGGCAACCCTGTTTACAAACCGCTTGGCAAAGGTGGGGCTTGCAACCCTATTTGTTCTGGTTGCGGAAACAGGTACCCTGGCCGTGGCTGCAAATCCCGTTACCAGGGCAGGGGCATGTAAAATATTTCCATCAGGGGGCATGATAAAATTTTCCCCCCCTATGTACGCAAGCATGCTTGGAAATTATTGGGCAGTTCAGCAGTTGTTTTATGGACATCGATGGAAAAGGTTGAACCCTCAGTTGATTTTGTTTTTTTTCAGGATTGTTACGGGATTCCAGGCAAATAAACCCTCATGATCCCTGGTTATTTCCATGCTGAATTTGTTTGGATTGCCACCTAAACATGTTTACGGACGATTTTAAAGGAAGCCGGTTGTTGTCCTGCCAAACGCAAAAGGGTCAGCATTGATTTGCTGTTGCAAGCTTCAATATTGGATTCCTGTTTTTTTCCCCACTGTTAGTTACTCATTTCCTT] [-] EMBL BI306119 [GGCAAAAAAGGGTGCTACAAGGGGGCAACCCTGTTTACAAACCGCTTGGCAAAGGTGGGGCTTGCAACCCTATTTGTTCTGGTTGCGGAAACAGGTACCCTGGCCGTGGCTGCAAATCCCGTTACCAGGGCAGGGGCATGTAAAATATTTCCATCAGGGGGCATGATAAAATTTTCCCCCCCTATGTACGCAAGCATGCTTGGAAATTATTGGGCAGTTCAGCAGTTGTTTTATGGACATCGATGGAAAAGGTTGAACCCTCAGTTGATTTTGTTTTTTTTCAGGATTGTTACGGGATTCCAGGCAAATAAACCCTCATGATCCCTGGTTATTTCCATGCTGAATTTGTTTGGATTGCCACCTAAACATGTTTACGGACGATTTTAAAGGAAGCCGGTTGTTGTCCTGCCAAACGCAAAAGGGTCAGCATTGATTTGCTGTTGCAAGCTTCAATATTGGATTCCTGTTTTTTTCCCCACTGTTAGTTACTCATTTCCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3377#0 TGGAAACGCCGAATAACCAGTGATGAAGCCACTGCTACTGCTCATCTCCTCCATTGTAGT 60 consensus_3377#1 ------------------------------------------------------------ consensus_3377#0 GATGACATTCTTACTCCTCCTGAGCGGCGCCGGCGCTCTCACCGCCGATCACGCCACCGT 120 consensus_3377#1 ------------------------------------------------------------ consensus_3377#0 CGGCGTCGCCGTGGCCGGCGGCAAGCGCACCCGCCACGCGGAGGAACTAAGTGAGATGGA 180 consensus_3377#1 ------------------------------------------------------------ consensus_3377#0 TTCGGTGCCGTACCCGCAAAGAAGGGTGCTACAAGGTGGCAACACTGTCTACAGACCGCT 240 consensus_3377#1 --------------GGCAAAAAAGGGTGCTACAAGGGGGCAACCCTGTTTACAAACCGCT 46 ***** *************** ****** **** **** ****** consensus_3377#0 TGGCAGAGGTGCGGCTTGCAACCCTATTTGCCCTGGTCGCGGAGACAGGTACACTGGCCG 300 consensus_3377#1 TGGCAAAGGTGGGGCTTGCAACCCTATTTGTTCTGGTTGCGGAAACAGGTACCCTGGCCG 106 ***** ***** ****************** ***** ***** ******** ******* consensus_3377#0 TGGCTGCAAATCCCGTTACCAGTGCAGGGGCATGTAAGATATCTCCATCAGGGTGCATGA 360 consensus_3377#1 TGGCTGCAAATCCCGTTACCAGGGCAGGGGCATGTAAAATATTTCCATCAGGGGGCATGA 166 ********************** ************** **** ********** ****** consensus_3377#0 TAATATCTTCACACCCTATGTACGCATGCATGCTTGGAAATTATTGGGCAGTTCAGCAGT 420 consensus_3377#1 TAAAATTTTCCCCCCCTATGTACGCAAGCATGCTTGGAAATTATTGGGCAGTTCAGCAGT 226 *** ** *** * ************* ********************************* consensus_3377#0 TGTTCTATGTACATCGATGGAGTAGGTTGAACACTCAGTTGATCTCGTCTTTTTTCAGTA 480 consensus_3377#1 TGTTTTATGGACATCGATGGAAAAGGTTGAACCCTCAGTTGATTTTGTTTTTTTTCAGGA 286 **** **** *********** ********* ********** * ** ********* * consensus_3377#0 TTGTTACGGTATTCCAGGCATATAAACACTCATG-------------------------- 514 consensus_3377#1 TTGTTACGGGATTCCAGGCAAATAAACCCTCATGATCCCTGGTTATTTCCATGCTGAATT 346 ********* ********** ****** ****** consensus_3377#0 ------------------------------------------------------------ consensus_3377#1 TGTTTGGATTGCCACCTAAACATGTTTACGGACGATTTTAAAGGAAGCCGGTTGTTGTCC 406 consensus_3377#0 ------------------------------------------------------------ consensus_3377#1 TGCCAAACGCAAAAGGGTCAGCATTGATTTGCTGTTGCAAGCTTCAATATTGGATTCCTG 466 consensus_3377#0 --------------------------------- consensus_3377#1 TTTTTTTCCCCACTGTTAGTTACTCATTTCCTT 499 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||