cluster # 3379

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Oryza sativa
cluster # 3379 cluster # 3379 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3379#0 length = 333 sequences # 1

consensus_3379#1 length = 318 sequences # 1

consensusID : consensus_3379#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 333
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGGATATAAAAACAACGATGGGATTTCCCCTTAAAACCCATTATGGGGGAAACTTATTGCCTTAATCACCCCCATTTTCTGACATAAAACATCGTCCTATACCTCCTTTTTTAACCTAACATCCAGCCCACTTGGTACATGCAAATTTTTCAAAACACATTTAGGGTGGGTTTATTTGCCGGGGCCCCCCCATCCGTTTCTTGAAAGCCCCAACGTTTTTTTTGTTTCCCTTTGGGGGGGCCCTAAAATACTCCTTGGGGTTACCCTTAAACTTG]

[+] EMBL CF313694             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGGATATAAAAACAACGATGGGATTTCCCCTTAAAACCCATTATGGGGGAAACTTATTGCCTTAATCACCCCCATTTTCTGACATAAAACATCGTCCTATACCTCCTTTTTTAACCTAACATCCAGCCCACTTGGTACATGCAAATTTTTCAAAACACATTTAGGGTGGGTTTATTTGCCGGGGCCCCCCCATCCGTTTCTTGAAAGCCCCAACGTTTTTTTTGTTTCCCTTTGGGGGGGCCCTAAAATACTCCTTGGGGTTACCCTTAAACTTG]




>consensus_3379#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGG
GATATAAAAACAACGATGGGATTTCCCCTTAAAACCCATTATGGGGGAAACTTATTGCCT
TAATCACCCCCATTTTCTGACATAAAACATCGTCCTATACCTCCTTTTTTAACCTAACAT
CCAGCCCACTTGGTACATGCAAATTTTTCAAAACACATTTAGGGTGGGTTTATTTGCCGG
GGCCCCCCCATCCGTTTCTTGAAAGCCCCAACGTTTTTTTTGTTTCCCTTTGGGGGGGCC
CTAAAATACTCCTTGGGGTTACCCTTAAACTTG

consensusID : consensus_3379#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 318
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATTTTTTTAAAATTTTCTAAGGGATTTTTAAACAACAATGGGATTTCCCCTTAAAACCCATTTTGGGGGAAACTTTTCCCCTTAATCACCCCCATTTTCTGACATAAAACATTGTCCTTTACCTCCTTTTTTAAACTAACATCCAGCCCCGTTGGGACATGCAAAATTTTAAAAACAAATTTAGGGTGGGTTTAATTGCCGGGGTCCTCCAATCCGTTTTTTAAAAGCCCCAACGTTTTCCTTGTTTCCCTTCCG]

[+] EMBL CF298348             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATTTTTTTAAAATTTTCTAAGGGATTTTTAAACAACAATGGGATTTCCCCTTAAAACCCATTTTGGGGGAAACTTTTCCCCTTAATCACCCCCATTTTCTGACATAAAACATTGTCCTTTACCTCCTTTTTTAAACTAACATCCAGCCCCGTTGGGACATGCAAAATTTTAAAAACAAATTTAGGGTGGGTTTAATTGCCGGGGTCCTCCAATCCGTTTTTTAAAAGCCCCAACGTTTTCCTTGTTTCCCTTCCG]




>consensus_3379#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TAAATTTTTTTAAAATTTTCTAAGGGATTTTTAAACAACAATGGGATTTCCCCTTAAAAC
CCATTTTGGGGGAAACTTTTCCCCTTAATCACCCCCATTTTCTGACATAAAACATTGTCC
TTTACCTCCTTTTTTAAACTAACATCCAGCCCCGTTGGGACATGCAAAATTTTAAAAACA
AATTTAGGGTGGGTTTAATTGCCGGGGTCCTCCAATCCGTTTTTTAAAAGCCCCAACGTT
TTCCTTGTTTCCCTTCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3379#0      ------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 42
consensus_3379#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
                                        ******************************************

consensus_3379#0      T---TTTTTTT----TTTTTTTAGGGATATAAAAACAACGATGGGATTTCCCCTTAAAAC 95
consensus_3379#1      TAAATTTTTTTAAAATTTTCTAAGGGATTTTTAAACAACAATGGGATTTCCCCTTAAAAC 120
                      *   *******    **** * ****** *  ******* ********************

consensus_3379#0      CCATTATGGGGGAAACTTATTGCCTTAATCACCCCCATTTTCTGACATAAAACATCGTCC 155
consensus_3379#1      CCATTTTGGGGGAAACTTTTCCCCTTAATCACCCCCATTTTCTGACATAAAACATTGTCC 180
                      ***** ************ *  ********************************* ****

consensus_3379#0      TATACCTCCTTTTTTAACCTAACATCCAGCCCACTTGGTACATGCAAATTTTTCAAAACA 215
consensus_3379#1      TTTACCTCCTTTTTTAAACTAACATCCAGCCCCGTTGGGACATGCAAAATTTTAAAAACA 240
                      * *************** **************  **** ********* **** ******

consensus_3379#0      CATTTAGGGTGGGTTTATTTGCCGGGGCCCCCCCATCCGTTTCTTGAAAGCCCCAACGTT 275
consensus_3379#1      AATTTAGGGTGGGTTTAATTGCCGGGGTCCTCCAATCCGTTTTTTAAAAGCCCCAACGTT 300
                       **************** ********* ** ** ******** ** **************

consensus_3379#0      TTTTTTGTTTCCCTTTGGGGGGGCCCTAAAATACTCCTTGGGGTTACCCTTAAACTTG 333
consensus_3379#1      TTCCTTGTTTCCCTTCCG---------------------------------------- 318
                      **  ***********  *