These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3388#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1719 fasta sequence [GACCAGCGAGTTCGACAACCAAAAGTGTGCCTTGTCTTCACCCACCCGTGTGGATAAGCACGCTTAAGCTCTTCGAATCCTCTCTCACTTTTCACCCCCGAAAGGTCTGCGAGTTTCGAGAGTTTCCAGAGCTCCCCAACTTTCCATGAACGAAGCGTCACACTAACCTGTCCACTCTTTACGAGAACCCAGTCACTCGCTCTCTCTCTCCGTCGCTCGCTTCACCATGTTCGGAAAACGCTCTTTCGCTAGCTCGAAGGACAAGGACCGTTCAGGCAAGATCACCAAGCAGCCAAAGAGATCGATGCGCGAAGCTTCCAAGCACAAGGCCATGGCCGAGAAGCTGGATGCTCGCAGGGACAGCCCCATGATGGGCGGAGCATCGCCCCAACTAACCGCGGCCATCGTCACGGTCGTCGTTGGCTCCGACCAGCGCATGTTTGCTGCCCACGAAGACGTCCTCTGCCACTCTCCCTACTTTGCGGAACTGTTGCGCAGCCAGTTCTTCGAGTCAACTAACCGCCGCATCGATCTCCCGACAGAAGAGCCTGAGATCTTCAGTTGCATCCTAGAGTATCTGTACAAGGGAGACTACTACCCCTGCCTTGTCCACGACAAGCGCCGCCAAACCTGGATGCTCGAAGGTGCAATTGCATCCCCCGACCCAAACAAACCTGGCGACCGCGCACCCGCTGCTGTCGAGCCTACCCTCTTCCACTCTGGCGTGGGAGACGTCATTCTCCGCGACACAGCAATCTACTGCGCTGCTGATCGTTACGGCCTTGAAGAGCTCAAGAAGCTCTCCCTGCGCAAGCAGGGCCTGCAGAGCGGGATCGAGGTTGGAACCATCTTGCGCAGTGCCCGCTATGCCTACGAGAACACGCCAGATAGCGACTCGCGTCTGCGCGCTCATTACCTCGCTCTGATTATCCGCAGTCGCAAAACCTTTAAGCGTAGTGGAACCATGCAGATGGAGATGGAGATGGGAGGAAAGCTGTTTTTTGACCTGTTCGTGGCAATGTGCAATCACGTCGATGATCTTGTGGATGCGAGCCCCTCTGCTCGCGGCACTCCCAGGACCATCTAAAGACCCGATTGCACGCCCGCTGCTTCCCGTCATTGAACACGCCCGACAAATGCCACACAACACGGAGTCCCTAATCAAGTTGAACCCCCCGAAACTCCGCCTCACCTCAAATTGCCGACAAGCGACCCTAAAACGTGAAAATACTAAAAAAAAAAACACGGAACCGGAGTAGTACGGGTTGATTCCCCTCTCTTTCCCTGCTTTTCCATCGGCGCATGAATGTTGTTGCATCAGTCATCCTCTCTCCTCTTATGCTACTTTAGTCCCTTTCCGTGGTACTTTGGTCACTCCCATCTCCTCTCCTCCCAATAAAAAAAAGGAATAATCGCCCATCAGACCCCCCCTTTTTTTGTTTACGGTATTACGACAACTGCACACTCTACTCTCCTCTCCTGCTTGCGGGAGAGAGTACATTGACGAAACTGGGTTTCTTTCCTTTGTTCTAGGGGACGAAGTGTCTTGTTGTCTACATGCGTGGGGCCTGTAATGGAGAAGAAGGTTGAAGGAAACATTTTTCCTTTGCTCGTTCTTTCGTTCTTTTTGTCTCAAAGCAAAGCCTGGTACCGTTTCTGCTCTTGAATAGGTCAGACTGCGGAGGAATATCTTAGCGGTGGCAATAATGAGAAACTTTC] [+] EMBL AK109123 [GACCAGCGAGTTCGACAACCAAAAGTGTGCCTTGTCTTCACCCACCCGTGTGGATAAGCACGCTTAAGCTCTTCGAATCCTCTCTCACTTTTCACCCCCGAAAGGTCTGCGAGTTTCGAGAGTTTCCAGAGCTCCCCAACTTTCCATGAACGAAGCGTCACACTAACCTGTCCACTCTTTACGAGAACCCAGTCACTCGCTCTCTCTCTCCGTCGCTCGCTTCACCATGTTCGGAAAACGCTCTTTCGCTAGCTCGAAGGACAAGGACCGTTCAGGCAAGATCACCAAGCAGCCAAAGAGATCGATGCGCGAAGCTTCCAAGCACAAGGCCATGGCCGAGAAGCTGGATGCTCGCAGGGACAGCCCCATGATGGGCGGAGCATCGCCCCAACTAACCGCGGCCATCGTCACGGTCGTCGTTGGCTCCGACCAGCGCATGTTTGCTGCCCACGAAGACGTCCTCTGCCACTCTCCCTACTTTGCGGAACTGTTGCGCAGCCAGTTCTTCGAGTCAACTAACCGCCGCATCGATCTCCCGACAGAAGAGCCTGAGATCTTCAGTTGCATCCTAGAGTATCTGTACAAGGGAGACTACTACCCCTGCCTTGTCCACGACAAGCGCCGCCAAACCTGGATGCTCGAAGGTGCAATTGCATCCCCCGACCCAAACAAACCTGGCGACCGCGCACCCGCTGCTGTCGAGCCTACCCTCTTCCACTCTGGCGTGGGAGACGTCATTCTCCGCGACACAGCAATCTACTGCGCTGCTGATCGTTACGGCCTTGAAGAGCTCAAGAAGCTCTCCCTGCGCAAGCAGGGCCTGCAGAGCGGGATCGAGGTTGGAACCATCTTGCGCAGTGCCCGCTATGCCTACGAGAACACGCCAGATAGCGACTCGCGTCTGCGCGCTCATTACCTCGCTCTGATTATCCGCAGTCGCAAAACCTTTAAGCGTAGTGGAACCATGCAGATGGAGATGGAGATGGGAGGAAAGCTGTTTTTTGACCTGTTCGTGGCAATGTGCAATCACGTCGATGATCTTGTGGATGCGAGCCCCTCTGCTCGCGGCACTCCCAGGACCATCTAAAGACCCGATTGCACGCCCGCTGCTTCCCGTCATTGAACACGCCCGACAAATGCCACACAACACGGAGTCCCTAATCAAGTTGAACCCCCCGAAACTCCGCCTCACCTCAAATTGCCGACAAGCGACCCTAAAACGTGAAAATACTAAAAAAAAAAACACGGAACCGGAGTAGTACGGGTTGATTCCCCTCTCTTTCCCTGCTTTTCCATCGGCGCATGAATGTTGTTGCATCAGTCATCCTCTCTCCTCTTATGCTACTTTAGTCCCTTTCCGTGGTACTTTGGTCACTCCCATCTCCTCTCCTCCCAATAAAAAAAAGGAATAATCGCCCATCAGACCCCCCCTTTTTTTGTTTACGGTATTACGACAACTGCACACTCTACTCTCCTCTCCTGCTTGCGGGAGAGAGTACATTGACGAAACTGGGTTTCTTTCCTTTGTTCTAGGGGACGAAGTGTCTTGTTGTCTACATGCGTGGGGCCTGTAATGGAGAAGAAGGTTGAAGGAAACATTTTTCCTTTGCTCGTTCTTTCGTTCTTTTTGTCTCAAAGCAAAGCCTGGTACCGTTTCTGCTCTTGAATAGGTCAGACTGCGGAGGAATATCTTAGCGGTGGCAATAATGAGAAACTTTC] consensusID : consensus_3388#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1385 fasta sequence [GGATGCGCGCAAGGATAGCCCCATGATGGAGTCGACGTCACCAAGTCTGACCTCCGCCATCGTGACAGTCGTCGTGGGTCCCGACCAGCGACTGTTTGCTGCGCATGAAGACGTCCTGTCACATGCCCCGTTCTTCGCGCAAGCGTTGCACGGCCAGTTCTTCGAATCCACTACTCGACGCATCGATCTGCCTACAGAGGAGCCTGAGGTCTTCTCCTGCGTCCTCGAGTATCTGTACAAGGGTGACTACTACCCCCCGCTTGCTTCATGATAAGCGCCGTCAGACCTGGATGCTTGAGGGTGCAATGACCTCGCCCGACCCCAATAAAACCAGCGACCGCGCTGCCGCAGTCGAGCCAACCTTTTTCCATACCGGTGTGGGTGACGTTATCCTTCGTGACACAGCCGTGTATTGCGCTGCCGACCGCTACGGCCTCGAGGAGCTCAAGAAGCTCTCTCTGCGCAAGCAGGGCCTGCAGAGCGGGATCGAAGTCGGCGTGATCCTGCGCAGTGCTCGGTATGCCTACGAGAACACACCGGACAATGACTCGCGGCTGCGCGCTCATTACCTCGCTTTGATTATCCGCAGCCGGAAAACATTCAAGCGTAGTGGAACCATGCAGATGGAGATGGAGATGGGGGGAAAACTGTTCTTTGACTTGTTCGTGGCGATGTGCAACCATGTCGATGATCTTGTGGACGCGAGCCCATCCGCTCGCGGCACTCCTAGGACCATCTAAGGTTGCAACGACCACTTCTCGTCAAGCACAACTGCAAACACACCACACACCACACAACTTTGGAGTACCATTAATTTGATCCACTCTCAACTCCCGACAAACACAAATTGCCAACAAGCGACAATGCTCACGCAACTCGCTCATCGTCACTCAACGTAAACAACAAAACCCAGAAAAAGACGGAAAGGACACGACTCCTCCCCTGATTTACTCGGCGTATCTCGACGGCCCGGCTGGTTGCAATTATCCTTACCCTCCCCTCATCTTTACACGCGCTTCTTCTTCTCCTCTCTCCTTTACCGTGTTTGCTCACCCCTGTCACGTTTCTAATGTTTCTTGAAAAATAGCGTTGCAACGTTCTTCTCACACCACCCCTCTCTGCTTGCGGAGAGAGTACATGTCTACGACGAGACTGCGTTTCCTTTGTTCATATGTGCGCGTTGGTGGATGAAGTGAGAACTGTTGTAGTTATAGTAAGGGATATACGGACATTCATTTTCAGATGTATGGTTCTGCGCTGGTCACGATGACCGCGCTGGAAGGCTCTTCCATTGATGGAAAGGCCGAAGCGGAAAGACTGACTGAAACCACTCGAATGGTCAGACTAGCTGCGGAGGATTTTAGTGGCGCGCAATGAGAGATTTA] [+] EMBL AK109073 [GGATGCGCGCAAGGATAGCCCCATGATGGAGTCGACGTCACCAAGTCTGACCTCCGCCATCGTGACAGTCGTCGTGGGTCCCGACCAGCGACTGTTTGCTGCGCATGAAGACGTCCTGTCACATGCCCCGTTCTTCGCGCAAGCGTTGCACGGCCAGTTCTTCGAATCCACTACTCGACGCATCGATCTGCCTACAGAGGAGCCTGAGGTCTTCTCCTGCGTCCTCGAGTATCTGTACAAGGGTGACTACTACCCCCCGCTTGCTTCATGATAAGCGCCGTCAGACCTGGATGCTTGAGGGTGCAATGACCTCGCCCGACCCCAATAAAACCAGCGACCGCGCTGCCGCAGTCGAGCCAACCTTTTTCCATACCGGTGTGGGTGACGTTATCCTTCGTGACACAGCCGTGTATTGCGCTGCCGACCGCTACGGCCTCGAGGAGCTCAAGAAGCTCTCTCTGCGCAAGCAGGGCCTGCAGAGCGGGATCGAAGTCGGCGTGATCCTGCGCAGTGCTCGGTATGCCTACGAGAACACACCGGACAATGACTCGCGGCTGCGCGCTCATTACCTCGCTTTGATTATCCGCAGCCGGAAAACATTCAAGCGTAGTGGAACCATGCAGATGGAGATGGAGATGGGGGGAAAACTGTTCTTTGACTTGTTCGTGGCGATGTGCAACCATGTCGATGATCTTGTGGACGCGAGCCCATCCGCTCGCGGCACTCCTAGGACCATCTAAGGTTGCAACGACCACTTCTCGTCAAGCACAACTGCAAACACACCACACACCACACAACTTTGGAGTACCATTAATTTGATCCACTCTCAACTCCCGACAAACACAAATTGCCAACAAGCGACAATGCTCACGCAACTCGCTCATCGTCACTCAACGTAAACAACAAAACCCAGAAAAAGACGGAAAGGACACGACTCCTCCCCTGATTTACTCGGCGTATCTCGACGGCCCGGCTGGTTGCAATTATCCTTACCCTCCCCTCATCTTTACACGCGCTTCTTCTTCTCCTCTCTCCTTTACCGTGTTTGCTCACCCCTGTCACGTTTCTAATGTTTCTTGAAAAATAGCGTTGCAACGTTCTTCTCACACCACCCCTCTCTGCTTGCGGAGAGAGTACATGTCTACGACGAGACTGCGTTTCCTTTGTTCATATGTGCGCGTTGGTGGATGAAGTGAGAACTGTTGTAGTTATAGTAAGGGATATACGGACATTCATTTTCAGATGTATGGTTCTGCGCTGGTCACGATGACCGCGCTGGAAGGCTCTTCCATTGATGGAAAGGCCGAAGCGGAAAGACTGACTGAAACCACTCGAATGGTCAGACTAGCTGCGGAGGATTTTAGTGGCGCGCAATGAGAGATTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3388#0 GACCAGCGAGTTCGACAACCAAAAGTGTGCCTTGTCTTCACCCACCCGTGTGGATAAGCA 60 consensus_3388#1 ------------------------------------------------------------ consensus_3388#0 CGCTTAAGCTCTTCGAATCCTCTCTCACTTTTCACCCCCGAAAGGTCTGCGAGTTTCGAG 120 consensus_3388#1 ------------------------------------------------------------ consensus_3388#0 AGTTTCCAGAGCTCCCCAACTTTCCATGAACGAAGCGTCACACTAACCTGTCCACTCTTT 180 consensus_3388#1 ------------------------------------------------------------ consensus_3388#0 ACGAGAACCCAGTCACTCGCTCTCTCTCTCCGTCGCTCGCTTCACCATGTTCGGAAAACG 240 consensus_3388#1 ------------------------------------------------------------ consensus_3388#0 CTCTTTCGCTAGCTCGAAGGACAAGGACCGTTCAGGCAAGATCACCAAGCAGCCAAAGAG 300 consensus_3388#1 ------------------------------------------------------------ consensus_3388#0 ATCGATGCGCGAAGCTTCCAAGCACAAGGCCATGGCCGAGAAGCTGGATGCTCGCAGGGA 360 consensus_3388#1 ---------------------------------------------GGATGCGCGCAAGGA 15 ****** **** *** consensus_3388#0 CAGCCCCATGATGGGCGGAGCATCGCCCCAACTAACCGCGGCCATCGTCACGGTCGTCGT 420 consensus_3388#1 TAGCCCCATGATGGAGTCGACGTCACCAAGTCTGACCTCCGCCATCGTGACAGTCGTCGT 75 ************* * ** ** ** *** * ******** ** ******** consensus_3388#0 TGGCTCCGACCAGCGCATGTTTGCTGCCCACGAAGACGTCCTCTGCCACTCTCCCTACTT 480 consensus_3388#1 GGGTCCCGACCAGCGACTGTTTGCTGCGCATGAAGACGTCCTGTCACATGCCCCGTTCTT 135 ** ********** ********** ** *********** * ** * ** * *** consensus_3388#0 TGCGGAACTGTTGCGCAGCCAGTTCTTCGAGTCAACTAACCGCCGCATCGATCTCCCGAC 540 consensus_3388#1 CGCGCAAGCGTTGCACGGCCAGTTCTTCGAATCCACTACTCGACGCATCGATCTGCCTAC 195 *** ** ***** * ************* ** **** ** *********** ** ** consensus_3388#0 AGAAGAGCCTGAGATCTTCAGTTGCATCCTAGAGTATCTGTACAAGGGAGACTACTACCC 600 consensus_3388#1 AGAGGAGCCTGAGGTCTTCTCCTGCGTCCTCGAGTATCTGTACAAGGGTGACTACTACCC 255 *** ********* ***** *** **** ***************** *********** consensus_3388#0 CTGCCTTG-TCCACGACAAGCGCCGCCAAACCTGGATGCTCGAAGGTGCAATTGCATCCC 659 consensus_3388#1 CCCGCTTGCTTCATGATAAGCGCCGTCAGACCTGGATGCTTGAGGGTGCAATGACCTCGC 315 * **** * ** ** ******** ** *********** ** ******** * ** * consensus_3388#0 CCGACCCAAACAAACCTGGCGACCGCGCACCCGCTGCTGTCGAGCCTACCCTCTTCCACT 719 consensus_3388#1 CCGACCCCAATAAAACCAGCGACCGCGC---TGCCGCAGTCGAGCCAACCTTTTTCCATA 372 ******* ** *** * ********** ** ** ******** *** * ***** consensus_3388#0 CTGGCGTGGGAGACGTCATTCTCCGCGACACAGCAATCTACTGCGCTGCTGATCGTTACG 779 consensus_3388#1 CCGGTGTGGGTGACGTTATCCTTCGTGACACAGCCGTGTATTGCGCTGCCGACCGCTACG 432 * ** ***** ***** ** ** ** ******** * ** ******** ** ** **** consensus_3388#0 GCCTTGAAGAGCTCAAGAAGCTCTCCCTGCGCAAGCAGGGCCTGCAGAGCGGGATCGAGG 839 consensus_3388#1 GCCTCGAGGAGCTCAAGAAGCTCTCTCTGCGCAAGCAGGGCCTGCAGAGCGGGATCGAAG 492 **** ** ***************** ******************************** * consensus_3388#0 TTGGAACCATCTTGCGCAGTGCCCGCTATGCCTACGAGAACACGCCAGATAGCGACTCGC 899 consensus_3388#1 TCGGCGTGATCCTGCGCAGTGCTCGGTATGCCTACGAGAACACACCGGACAATGACTCGC 552 * ** *** ********** ** ***************** ** ** * ******* consensus_3388#0 GTCTGCGCGCTCATTACCTCGCTCTGATTATCCGCAGTCGCAAAACCTTTAAGCGTAGTG 959 consensus_3388#1 GGCTGCGCGCTCATTACCTCGCTTTGATTATCCGCAGCCGGAAAACATTCAAGCGTAGTG 612 * ********************* ************* ** ***** ** ********** consensus_3388#0 GAACCATGCAGATGGAGATGGAGATGGGAGGAAAGCTGTTTTTTGACCTGTTCGTGGCAA 1019 consensus_3388#1 GAACCATGCAGATGGAGATGGAGATGGGGGGAAAACTGTTCTTTGACTTGTTCGTGGCGA 672 **************************** ***** ***** ****** ********** * consensus_3388#0 TGTGCAATCACGTCGATGATCTTGTGGATGCGAGCCCCTCTGCTCGCGGCACTCCCAGGA 1079 consensus_3388#1 TGTGCAACCATGTCGATGATCTTGTGGACGCGAGCCCATCCGCTCGCGGCACTCCTAGGA 732 ******* ** ***************** ******** ** ************** **** consensus_3388#0 CCATCTAAAGACCCGATTGCACGCCCGCTGCTTCCCGTCATTGAACACGCCCGACAAATG 1139 consensus_3388#1 CCATCTAAGGTTGCAACGAC-CACTTCTCGTCAAGCACAACTGCAAACACAC--CACACA 789 ******** * * * * * * * * * ** * ** * * ** * consensus_3388#0 CCACACAACAC-GGAGTCCCTAATCAAGTTGAACCCCCCGAAACTCCGCCTCACCTCAAA 1198 consensus_3388#1 CCACACAACTTTGGAGTACC--ATTAATTTGATCCACTCTCAACTCCCGACAAACACAAA 847 ********* ***** ** ** ** **** ** * * ****** * * **** consensus_3388#0 TTGCCGACAAGCGAC------CCTAAAACGTGAAAAT----ACT------AAAAAAAAAA 1242 consensus_3388#1 TTGCCAACAAGCGACAATGCTCACGCAACTCGCTCATCGTCACTCAACGTAAACAACAAA 907 ***** ********* * *** * ** *** *** ** *** consensus_3388#0 ACACGGAACCGGAGTAGTACGGGTTGATTCCCCTCTC---TTTCCCTGCTTTTC-CATCG 1298 consensus_3388#1 ACCCAGAAAAAGACGGAAAGGACACGACTCCTCCCCTGATTTACTCGGCGTATCTCGACG 967 ** * *** ** * * ** *** * * ** * * ** * ** * ** consensus_3388#0 GCGCA--TGAATGTTGTTGCATCAGTCATCCTCTCTCCTCT---TATGCTACTTTAGTCC 1353 consensus_3388#1 GCCCGGCTGGTTGCAATTATCCTTACCCTCCCCTCATCTTTACACGCGCTTCTTCTTCTC 1027 ** * ** ** ** * *** *** ** * *** *** * consensus_3388#0 CTTTCCGTGGTAC----TTTGGTCACTCCCATCTCCTCTCC----TCCCAATAAAAAAAA 1405 consensus_3388#1 CTCTCTCCTTTACCGTGTTTGCTCACCCCTGTCACGTTTCTAATGTTTCTTGAAAAATAG 1087 ** ** *** **** **** ** ** * * ** * * ***** * consensus_3388#0 GGAATAATCGCCCATCAGACCCCCCCTTTTTTTGTTTACGGTATTACGACAACTGCAC-A 1464 consensus_3388#1 CGTTGCAACGTTCTTCTCACACCACCCCTCTCTGCTTGCGGAGAGAGTACATGTCTACGA 1147 * * ** * ** ** ** ** * * ** ** *** * *** * ** * consensus_3388#0 CTCTACT-CTCCTCTCCTGCTTGCGGGAGAGAGTACATTGACGAAACTGGGTTTCTTTCC 1523 consensus_3388#1 CGAGACTGCGTTTCCTTTGTTCATATGTGCGCGTTGGTGGATGAAGTGAGAACTGTTGTA 1207 * *** * ** ** * * * * ** * ** *** * * ** consensus_3388#0 TTTGTTCTAGGGGACGAAGTGTCTTGTTGTCTACATGCGTGGGGC-CTGTAATGGAGAAG 1582 consensus_3388#1 GTTATAGTAAGGGATATACGGACAT-TCATTTTCAGATGTATGGTTCTGCGCTGGTCACG 1266 ** * ** **** * * * * * * * ** ** ** *** *** * * consensus_3388#0 AAGGTTGAAG-GAAACATTTTTCCTTTGCTCGTTCTTTCGTTCTTTTTGTCTCAAAGCAA 1641 consensus_3388#1 ATGACCGCGCTGGAAGGCTCTTCCATTGATGGAAAGGCCGA------------AGCGGAA 1314 * * * * ** * **** *** * * ** * * ** consensus_3388#0 AGCCTGGTACCGTTTCTGCTCTTGAATAGGTCAGACT-GCGGAGGAATATCTTAGCGGTG 1700 consensus_3388#1 AGACTG--ACTGAAACCACTC--GAAT-GGTCAGACTAGCTGCGGAGGATTTTAGTGGCG 1369 ** *** ** * * *** **** ********* ** * *** ** **** ** * consensus_3388#0 GCAATAATGAGAAACTTTC 1719 consensus_3388#1 C--GCAATGAGAGATTTA- 1385 ******* * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||